For questions or suggestions e-mail us at: ioerger@cs.tamu.edu

M. vanbaalenii PYR-1 Mvan_3900 (-)

annotation: integrase catalytic subunit
coordinates: 4169654 - 4170871
length: 405

VEDWAEIRRLYRFENLSPAAIARRLSLSRNTVAKAINAEAPPRYERAPSTTSAWAQVELAVRLLLGQFPT
MPATVLAQRVGWTGGHSWFAENVTRIRPEYPPAGPCDRLVHLPGEQVQCDLWFPGQLVPGHGGGLRSFPV
LVMVAAYSRFIAAIMIPSRVTGDLLAGMWQLIARDIGGVPRSLLWDNESGIGQRRHLAQGVAGFCGVLGT
RLIQARPYDPETKGVVERANGYLDTSFLPGRTFASPADFNAQLQSWLGAYANNRTHAGTRMIPVDALVAD
RAAMAALPPVAPVTGTAVTTRLGRDYYVSVGGNAYSINPEVIGRMITVRASLDRITALCGDRVVADHERL
WGTAGLVADPEHVAAAAVLREQFHSRPAASAHLEVSVEVADLGAYDAIFGTGEVA
Operon Prediction Model: Genebank

Paralogs
speciesidgenee-valueidentity (len)annotation
M. vanbaalenii PYR-1Mvan_3900--100% (405)integrase catalytic subunit
M. vanbaalenii PYR-1Mvan_0482-3e-9847.92% (409) integrase catalytic subunit
M. vanbaalenii PYR-1Mvan_5931-3e-0826.34% (391) transposase

Closest Orthologs (e-value cutoff: 1e-4)
speciesidgenee-valueidentity (len)annotation
M. bovis AF2122 / 97Mb2968-1e-9848.16% (407) IS1533 transposase
M. gilvum PYR-GCKMflv_0578-2e-2546.92% (130) integrase, catalytic region
M. tuberculosis H37RvRv2943-1e-9848.16% (407) IS1533 transposase
M. leprae Br4923-----
M. abscessus ATCC 19977-----
M. marinum MMMAR_2619-6e-0538.18% (55) transposase for ISMyma06
M. avium 104MAV_3533-6e-0824.00% (350) transposase
M. smegmatis MC2 155MSMEG_2151-3e-0924.61% (386) transposase IstA protein, putative
M. thermoresistible (build 8)TH_4229-6e-1226.16% (279) PUTATIVE putative acyl-CoA synthase
M. ulcerans Agy99-----

CLUSTAL 2.0.9 multiple sequence alignment


Mb2968|M.bovis_AF2122/97            --------MLTVEDWAEIRRLHRAEGLPIKMIARVLGISKNTVKSALESN
Rv2943|M.tuberculosis_H37Rv         --------MLTVEDWAEIRRLHRAEGLPIKMIARVLGISKNTVKSALESN
Mflv_0578|M.gilvum_PYR-GCK          --------------------------------------------------
Mvan_3900|M.vanbaalenii_PYR-1       -----------MEDWAEIRRLYRFENLSPAAIARRLSLSRNTVAKAINAE
MAV_3533|M.avium_104                -----------MNIISAYHQVGSYRGAAELCGTTHKTVKR-VIERAEAGG
MSMEG_2151|M.smegmatis_MC2_155      --------MLTWEDDVEVHALR-KRGWTISAIARHTGRDRKTIADYLSGK
TH_4229|M.thermoresistible__bu      MAFREVNVNEIREVLRLWLGVAGLPAPGLRTIAAHCGLDRKTVRRYVQAA
MMAR_2619|M.marinum_M               -----------MSHANASLTPRGRLRLARCVVDDRWTYARAAERFQCSTA
                                                                                      

Mb2968|M.bovis_AF2122/97            QQPKYERAP-QGSIVDAVEPRIRELLQA--YPTMPATVIAERIGWERSIR
Rv2943|M.tuberculosis_H37Rv         QQPKYERAP-QGSIVDAVEPRIRELLQA--YPTMPATVIAERIGWERSIR
Mflv_0578|M.gilvum_PYR-GCK          --------------------------------------------------
Mvan_3900|M.vanbaalenii_PYR-1       APPRYERAPSTTSAWAQVELAVRLLLGQ--FPTMPATVLAQRVGWTGGHS
MAV_3533|M.avium_104                APPREPRPRNLDAFTDLVATRVEKSHGK--MSAKRMLPIARAAGYQGSAR
MSMEG_2151|M.smegmatis_MC2_155      RTPGVRARPGPDPFEPFVDYVAARLTEDPHLWARTLLDELEQLGFPLSYQ
TH_4229|M.thermoresistible__bu      HAAGLRRDDDASVIDDGLIGAVAEAVRP-VRPHGHGAAWEQLLAFEGQIR
MMAR_2619|M.marinum_M               TAKKWADRYRVGGPEAMVDRSSRPHRSP---GRLPQRRERRIIKIRFTRR
                                                                                      

Mb2968|M.bovis_AF2122/97            VLSARVAELRP---VYLPPDPASRTTYV-----------------AGEIA
Rv2943|M.tuberculosis_H37Rv         VLSARVAELRP---VYLPPDPASRTTYV-----------------AGEIA
Mflv_0578|M.gilvum_PYR-GCK          --------------------------------------------------
Mvan_3900|M.vanbaalenii_PYR-1       WFAENVTRIRP---EYPPAGPCDRLVHL-----------------PGEQV
MAV_3533|M.avium_104                NFRRLVAEQKV---LWRNANRHQR--------------------------
MSMEG_2151|M.smegmatis_MC2_155      SLTRNIRARNLRPDCQACRTATERPNSV-----------------IEHAP
TH_4229|M.thermoresistible__bu      AWVAGDGEQRPLTITKIHTLLARQGCVVPYRTLHRFASERCGFGRKGTTV
MMAR_2619|M.marinum_M               WGPHRIAAHLR---------------------------------------
                                                                                      

Mb2968|M.bovis_AF2122/97            QCDFWFPPIELPVGF--------GQTRTAKQLPVLTMVCAYSRWLLAMLL
Rv2943|M.tuberculosis_H37Rv         QCDFWFPPIELPVGF--------GQTRTAKQLPVLTMVCAYSRWLLAMLL
Mflv_0578|M.gilvum_PYR-GCK          --------------------------------------------------
Mvan_3900|M.vanbaalenii_PYR-1       QCDLWFPGQLVP-----------GHGGGLRSFPVLVMVAAYSRFIAAIMI
MAV_3533|M.avium_104                RPAVWSPGDYLVMDW--------AEAAPG--LMVFCAVLAYSRWRFVRFA
MSMEG_2151|M.smegmatis_MC2_155      GDETQWDWLELPDPP--------ESWGWGKTAHLLVGSLAHSGKWRAALT
TH_4229|M.thermoresistible__bu      RVADGDPGVECQIDFGYLGMLTDATDGRRRKVHALIFTAVYSRHMFVWLT
MMAR_2619|M.marinum_M               -------------------------------LARSTVEAVLRRYRMPLLR
                                                                                      

Mb2968|M.bovis_AF2122/97            PSRCAEDLFAGWWRLIE-ALGAVPRVLVWDGEGAIGRWRGGRSELTTECQ
Rv2943|M.tuberculosis_H37Rv         PSRCAEDLFAGWWRLIE-ALGAVPRVLVWDGEGAIGRWRGGRSELTTECQ
Mflv_0578|M.gilvum_PYR-GCK          --------------------------------------------------
Mvan_3900|M.vanbaalenii_PYR-1       PSRVTGDLLAGMWQLIARDIGGVPRSLLWDNESGIG----QRRHLAQGVA
MAV_3533|M.avium_104                ADEKASTTLAMIAEALEAIGGVPAKILADRMGCLKGGVVANVVVPTPDYV
MSMEG_2151|M.smegmatis_MC2_155      PSEDQPQLVAALDRVTRELGGCTR---VWRFDRMATVCDPGSGRVTASFA
TH_4229|M.thermoresistible__bu      YSQTLAAVIAGCQAAWAFFGGVFAVLIPDNLKPVIASADALNPQFTRGWL
MMAR_2619|M.marinum_M               DLDQASGLPVRRPQPRRYEHPAPGDLVHLDVKKLGRIPDGGGHRKLGRHA
                                                                                      

Mb2968|M.bovis_AF2122/97            AFRGTLAAKVLICRPADPEAKGLIERAHDYLERSFLPGRVFASPAD----
Rv2943|M.tuberculosis_H37Rv         AFRGTLAAKVLICRPADPEAKGLIERAHDYLERSFLPGRVFASPAD----
Mflv_0578|M.gilvum_PYR-GCK          --------------------------------------------------
Mvan_3900|M.vanbaalenii_PYR-1       GFCGVLGTRLIQARPYDPETKGVVERANGYLDTSFLPGRTFASPAD----
MAV_3533|M.avium_104                RFASHYGFVPDFCHGADPQSKGIVENLCGYAQDDLAVPLLTEAALAGEQV
MSMEG_2151|M.smegmatis_MC2_155      GVAKHYGVSVAICPPRRGNRKGVVEKVNHTAAQRWWRTLDDELTAEA---
TH_4229|M.thermoresistible__bu      DYAGHGGFLTDPARVRSPKDKPRVERVVQYVRRNFWDGETFSSLDEA---
MMAR_2619|M.marinum_M               GRRNRSGVGYAFVHHAVDDHSRLAYSEILTDERKDTAAGFWLRANG----
                                                                                      

Mb2968|M.bovis_AF2122/97            ----FNAQLGAWL-ALVNTRTRRALGCAPTDRIGADRAAMLSLPPVAPAT
Rv2943|M.tuberculosis_H37Rv         ----FNAQLGAWL-ALVNTRTRRALGCAPTDRIGADRAAMLSLPPVAPAT
Mflv_0578|M.gilvum_PYR-GCK          -----------------------MLGCAPTDRIGADLAAMLALPPVPPQV
Mvan_3900|M.vanbaalenii_PYR-1       ----FNAQLQSWLGAYANNRTHAGTRMIPVDALVADRAAMAALPPVAPVT
MAV_3533|M.avium_104                DLRALNAQAQLWC-AEVNATVHSEICAVPNDRLVDERTVLRELPSLRPTI
MSMEG_2151|M.smegmatis_MC2_155      ----AQASVDRFARVRGGTRMRATADGRSAVAVVAKTEPLAPVP-ATPYP
TH_4229|M.thermoresistible__bu      -----QHVATVWCERTAGTRIHGTTCARPLEVFTAEEQPLLLAMPGVYDV
MMAR_2619|M.marinum_M               ----FFVDHGITVKRVLTDNGNCYRSKVFADSLGEEIAHKRTRPYRPQTN
                                                                    .  .              

Mb2968|M.bovis_AF2122/97            G-WCTSLRLPRDHYVRCDSNDYSVHPGVIGHRVLVRADLERVHVFC--DG
Rv2943|M.tuberculosis_H37Rv         G-WCTSLRLPRDHYVRCDSNDYSVHPGVIGHRVLVRADLERVHVFC--DG
Mflv_0578|M.gilvum_PYR-GCK          G-WRNSTRLARDHYVRLDSNDYSVHPGVIGRRIEVVADLDRVQVFC--EG
Mvan_3900|M.vanbaalenii_PYR-1       G-TAVTTRLGRDYYVSVGGNAYSINPEVIGRMITVRASLDRITALC--GD
MAV_3533|M.avium_104                GSGSVRRKVDGLSCIRYGSARYSVPQRLVGATVAVVVDHGALILLEPATG
MSMEG_2151|M.smegmatis_MC2_155      VIISQTRTASRQALVSYRGNRYSVPPELAAAQVVVSHPVGAQFCDIATVA
TH_4229|M.thermoresistible__bu      P-VFKAVKVHRDFHAEVAKALYSLPECWIGTTLDVRADGELVKFYH--RG
MMAR_2619|M.marinum_M               G--------KVERFNRTLASEWAYAQTYLSEVQRAATYQDWLHYYN----
                                                         ::      .    .               

Mb2968|M.bovis_AF2122/97            ELVADHERIWAV--HQTVSDPAHVEAAKVLRR------------RHFSAA
Rv2943|M.tuberculosis_H37Rv         ELVADHERIWAV--HQTVSDPAHVEAAKVLRR------------RHFSAA
Mflv_0578|M.gilvum_PYR-GCK          KTVAEHERVWAW--HQTITDPEHREAANMLRR------------NRISAL
Mvan_3900|M.vanbaalenii_PYR-1       RVVADHERLWGT--AGLVADPEHVAAAAVLRE------------QFHS--
MAV_3533|M.avium_104                VIVAEHELVSPG--EVSILDEHYDGPRPAPSRGPRPK--TQAE-KRFCAL
MSMEG_2151|M.smegmatis_MC2_155      GIVIARHRMAADGLGVMVRDSGHVIALDTMAMATASTGRPHRR-KERIPP
TH_4229|M.thermoresistible__bu      TLVKVHPRQPAGGRSTDRGDLPEHKAGYALRDLAALIAACAAHGPNIGIY
MMAR_2619|M.marinum_M               -----HHRPHTGIGGKTPIERLRVHNLPVKNT------------------
                                         :             :                              

Mb2968|M.bovis_AF2122/97            SPVVEP----QVQVRS---LSDYDDALGVDIDGG--VA------------
Rv2943|M.tuberculosis_H37Rv         SPVVEP----QVQVRS---LSDYDDALGVDIDGG--VA------------
Mflv_0578|M.gilvum_PYR-GCK          RPVTDSDQQVLVEQRR---LSDYDAALGIDLGEGGLVS------------
Mvan_3900|M.vanbaalenii_PYR-1       RPAASAHLEVSVEVAD---LGAYDAIFGTGEVA-----------------
MAV_3533|M.avium_104                GTEAQQFLVGAAAIGNTRLKSELDILLGLGAAHGEQALIDALRRAVAFRR
MSMEG_2151|M.smegmatis_MC2_155      GPAAKAAAAQLLHLNDANQEAAESSTWSTDSTVIDLSAYERAAQKRTIQ-
TH_4229|M.thermoresistible__bu      AERILDDPLPWTRMRTVYRLLGLVRRYGAQRVEAACSLSLDLDVVSVTKI
MMAR_2619|M.marinum_M               --------------------------------------------------
                                                                                      

Mb2968|M.bovis_AF2122/97            --------------------------------------------------
Rv2943|M.tuberculosis_H37Rv         --------------------------------------------------
Mflv_0578|M.gilvum_PYR-GCK          --------------------------------------------------
Mvan_3900|M.vanbaalenii_PYR-1       --------------------------------------------------
MAV_3533|M.avium_104                FRAADVRSILAAGAGTPQPRPAGDALVLDLPTVETRSLEAYKINTTDGTA
MSMEG_2151|M.smegmatis_MC2_155      --------------------------------------------------
TH_4229|M.thermoresistible__bu      ASMLERATETCAPALPRAVGQEATRFSRDPSEFSSTPTPLTVISHSESEE
MMAR_2619|M.marinum_M               --------------------------------------------------
                                                                                      

Mb2968|M.bovis_AF2122/97            --
Rv2943|M.tuberculosis_H37Rv         --
Mflv_0578|M.gilvum_PYR-GCK          --
Mvan_3900|M.vanbaalenii_PYR-1       --
MAV_3533|M.avium_104                S-
MSMEG_2151|M.smegmatis_MC2_155      --
TH_4229|M.thermoresistible__bu      TR
MMAR_2619|M.marinum_M               --