For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
VEDWAEIRRLYRFENLSPAAIARRLSLSRNTVAKAINAEAPPRYERAPSTTSAWAQVELAVRLLLGQFPT MPATVLAQRVGWTGGHSWFAENVTRIRPEYPPAGPCDRLVHLPGEQVQCDLWFPGQLVPGHGGGLRSFPV LVMVAAYSRFIAAIMIPSRVTGDLLAGMWQLIARDIGGVPRSLLWDNESGIGQRRHLAQGVAGFCGVLGT RLIQARPYDPETKGVVERANGYLDTSFLPGRTFASPADFNAQLQSWLGAYANNRTHAGTRMIPVDALVAD RAAMAALPPVAPVTGTAVTTRLGRDYYVSVGGNAYSINPEVIGRMITVRASLDRITALCGDRVVADHERL WGTAGLVADPEHVAAAAVLREQFHSRPAASAHLEVSVEVADLGAYDAIFGTGEVA
Operon Prediction Model: Genebank
Paralogs
species | id | gene | e-value | identity (len) | annotation |
M. vanbaalenii PYR-1 | Mvan_3900 | - | - | 100% (405) | integrase catalytic subunit |
M. vanbaalenii PYR-1 | Mvan_0482 | - | 3e-98 | 47.92% (409) | integrase catalytic subunit |
M. vanbaalenii PYR-1 | Mvan_5931 | - | 3e-08 | 26.34% (391) | transposase |
Closest Orthologs (e-value cutoff: 1e-4)
species | id | gene | e-value | identity (len) | annotation |
M. bovis AF2122 / 97 | Mb2968 | - | 1e-98 | 48.16% (407) | IS1533 transposase |
M. gilvum PYR-GCK | Mflv_0578 | - | 2e-25 | 46.92% (130) | integrase, catalytic region |
M. tuberculosis H37Rv | Rv2943 | - | 1e-98 | 48.16% (407) | IS1533 transposase |
M. leprae Br4923 | - | - | - | - | - |
M. abscessus ATCC 19977 | - | - | - | - | - |
M. marinum M | MMAR_2619 | - | 6e-05 | 38.18% (55) | transposase for ISMyma06 |
M. avium 104 | MAV_3533 | - | 6e-08 | 24.00% (350) | transposase |
M. smegmatis MC2 155 | MSMEG_2151 | - | 3e-09 | 24.61% (386) | transposase IstA protein, putative |
M. thermoresistible (build 8) | TH_4229 | - | 6e-12 | 26.16% (279) | PUTATIVE putative acyl-CoA synthase |
M. ulcerans Agy99 | - | - | - | - | - |
CLUSTAL 2.0.9 multiple sequence alignment Mb2968|M.bovis_AF2122/97 --------MLTVEDWAEIRRLHRAEGLPIKMIARVLGISKNTVKSALESN Rv2943|M.tuberculosis_H37Rv --------MLTVEDWAEIRRLHRAEGLPIKMIARVLGISKNTVKSALESN Mflv_0578|M.gilvum_PYR-GCK -------------------------------------------------- Mvan_3900|M.vanbaalenii_PYR-1 -----------MEDWAEIRRLYRFENLSPAAIARRLSLSRNTVAKAINAE MAV_3533|M.avium_104 -----------MNIISAYHQVGSYRGAAELCGTTHKTVKR-VIERAEAGG MSMEG_2151|M.smegmatis_MC2_155 --------MLTWEDDVEVHALR-KRGWTISAIARHTGRDRKTIADYLSGK TH_4229|M.thermoresistible__bu MAFREVNVNEIREVLRLWLGVAGLPAPGLRTIAAHCGLDRKTVRRYVQAA MMAR_2619|M.marinum_M -----------MSHANASLTPRGRLRLARCVVDDRWTYARAAERFQCSTA Mb2968|M.bovis_AF2122/97 QQPKYERAP-QGSIVDAVEPRIRELLQA--YPTMPATVIAERIGWERSIR Rv2943|M.tuberculosis_H37Rv QQPKYERAP-QGSIVDAVEPRIRELLQA--YPTMPATVIAERIGWERSIR Mflv_0578|M.gilvum_PYR-GCK -------------------------------------------------- Mvan_3900|M.vanbaalenii_PYR-1 APPRYERAPSTTSAWAQVELAVRLLLGQ--FPTMPATVLAQRVGWTGGHS MAV_3533|M.avium_104 APPREPRPRNLDAFTDLVATRVEKSHGK--MSAKRMLPIARAAGYQGSAR MSMEG_2151|M.smegmatis_MC2_155 RTPGVRARPGPDPFEPFVDYVAARLTEDPHLWARTLLDELEQLGFPLSYQ TH_4229|M.thermoresistible__bu HAAGLRRDDDASVIDDGLIGAVAEAVRP-VRPHGHGAAWEQLLAFEGQIR MMAR_2619|M.marinum_M TAKKWADRYRVGGPEAMVDRSSRPHRSP---GRLPQRRERRIIKIRFTRR Mb2968|M.bovis_AF2122/97 VLSARVAELRP---VYLPPDPASRTTYV-----------------AGEIA Rv2943|M.tuberculosis_H37Rv VLSARVAELRP---VYLPPDPASRTTYV-----------------AGEIA Mflv_0578|M.gilvum_PYR-GCK -------------------------------------------------- Mvan_3900|M.vanbaalenii_PYR-1 WFAENVTRIRP---EYPPAGPCDRLVHL-----------------PGEQV MAV_3533|M.avium_104 NFRRLVAEQKV---LWRNANRHQR-------------------------- MSMEG_2151|M.smegmatis_MC2_155 SLTRNIRARNLRPDCQACRTATERPNSV-----------------IEHAP TH_4229|M.thermoresistible__bu AWVAGDGEQRPLTITKIHTLLARQGCVVPYRTLHRFASERCGFGRKGTTV MMAR_2619|M.marinum_M WGPHRIAAHLR--------------------------------------- Mb2968|M.bovis_AF2122/97 QCDFWFPPIELPVGF--------GQTRTAKQLPVLTMVCAYSRWLLAMLL Rv2943|M.tuberculosis_H37Rv QCDFWFPPIELPVGF--------GQTRTAKQLPVLTMVCAYSRWLLAMLL Mflv_0578|M.gilvum_PYR-GCK -------------------------------------------------- Mvan_3900|M.vanbaalenii_PYR-1 QCDLWFPGQLVP-----------GHGGGLRSFPVLVMVAAYSRFIAAIMI MAV_3533|M.avium_104 RPAVWSPGDYLVMDW--------AEAAPG--LMVFCAVLAYSRWRFVRFA MSMEG_2151|M.smegmatis_MC2_155 GDETQWDWLELPDPP--------ESWGWGKTAHLLVGSLAHSGKWRAALT TH_4229|M.thermoresistible__bu RVADGDPGVECQIDFGYLGMLTDATDGRRRKVHALIFTAVYSRHMFVWLT MMAR_2619|M.marinum_M -------------------------------LARSTVEAVLRRYRMPLLR Mb2968|M.bovis_AF2122/97 PSRCAEDLFAGWWRLIE-ALGAVPRVLVWDGEGAIGRWRGGRSELTTECQ Rv2943|M.tuberculosis_H37Rv PSRCAEDLFAGWWRLIE-ALGAVPRVLVWDGEGAIGRWRGGRSELTTECQ Mflv_0578|M.gilvum_PYR-GCK -------------------------------------------------- Mvan_3900|M.vanbaalenii_PYR-1 PSRVTGDLLAGMWQLIARDIGGVPRSLLWDNESGIG----QRRHLAQGVA MAV_3533|M.avium_104 ADEKASTTLAMIAEALEAIGGVPAKILADRMGCLKGGVVANVVVPTPDYV MSMEG_2151|M.smegmatis_MC2_155 PSEDQPQLVAALDRVTRELGGCTR---VWRFDRMATVCDPGSGRVTASFA TH_4229|M.thermoresistible__bu YSQTLAAVIAGCQAAWAFFGGVFAVLIPDNLKPVIASADALNPQFTRGWL MMAR_2619|M.marinum_M DLDQASGLPVRRPQPRRYEHPAPGDLVHLDVKKLGRIPDGGGHRKLGRHA Mb2968|M.bovis_AF2122/97 AFRGTLAAKVLICRPADPEAKGLIERAHDYLERSFLPGRVFASPAD---- Rv2943|M.tuberculosis_H37Rv AFRGTLAAKVLICRPADPEAKGLIERAHDYLERSFLPGRVFASPAD---- Mflv_0578|M.gilvum_PYR-GCK -------------------------------------------------- Mvan_3900|M.vanbaalenii_PYR-1 GFCGVLGTRLIQARPYDPETKGVVERANGYLDTSFLPGRTFASPAD---- MAV_3533|M.avium_104 RFASHYGFVPDFCHGADPQSKGIVENLCGYAQDDLAVPLLTEAALAGEQV MSMEG_2151|M.smegmatis_MC2_155 GVAKHYGVSVAICPPRRGNRKGVVEKVNHTAAQRWWRTLDDELTAEA--- TH_4229|M.thermoresistible__bu DYAGHGGFLTDPARVRSPKDKPRVERVVQYVRRNFWDGETFSSLDEA--- MMAR_2619|M.marinum_M GRRNRSGVGYAFVHHAVDDHSRLAYSEILTDERKDTAAGFWLRANG---- Mb2968|M.bovis_AF2122/97 ----FNAQLGAWL-ALVNTRTRRALGCAPTDRIGADRAAMLSLPPVAPAT Rv2943|M.tuberculosis_H37Rv ----FNAQLGAWL-ALVNTRTRRALGCAPTDRIGADRAAMLSLPPVAPAT Mflv_0578|M.gilvum_PYR-GCK -----------------------MLGCAPTDRIGADLAAMLALPPVPPQV Mvan_3900|M.vanbaalenii_PYR-1 ----FNAQLQSWLGAYANNRTHAGTRMIPVDALVADRAAMAALPPVAPVT MAV_3533|M.avium_104 DLRALNAQAQLWC-AEVNATVHSEICAVPNDRLVDERTVLRELPSLRPTI MSMEG_2151|M.smegmatis_MC2_155 ----AQASVDRFARVRGGTRMRATADGRSAVAVVAKTEPLAPVP-ATPYP TH_4229|M.thermoresistible__bu -----QHVATVWCERTAGTRIHGTTCARPLEVFTAEEQPLLLAMPGVYDV MMAR_2619|M.marinum_M ----FFVDHGITVKRVLTDNGNCYRSKVFADSLGEEIAHKRTRPYRPQTN . . Mb2968|M.bovis_AF2122/97 G-WCTSLRLPRDHYVRCDSNDYSVHPGVIGHRVLVRADLERVHVFC--DG Rv2943|M.tuberculosis_H37Rv G-WCTSLRLPRDHYVRCDSNDYSVHPGVIGHRVLVRADLERVHVFC--DG Mflv_0578|M.gilvum_PYR-GCK G-WRNSTRLARDHYVRLDSNDYSVHPGVIGRRIEVVADLDRVQVFC--EG Mvan_3900|M.vanbaalenii_PYR-1 G-TAVTTRLGRDYYVSVGGNAYSINPEVIGRMITVRASLDRITALC--GD MAV_3533|M.avium_104 GSGSVRRKVDGLSCIRYGSARYSVPQRLVGATVAVVVDHGALILLEPATG MSMEG_2151|M.smegmatis_MC2_155 VIISQTRTASRQALVSYRGNRYSVPPELAAAQVVVSHPVGAQFCDIATVA TH_4229|M.thermoresistible__bu P-VFKAVKVHRDFHAEVAKALYSLPECWIGTTLDVRADGELVKFYH--RG MMAR_2619|M.marinum_M G--------KVERFNRTLASEWAYAQTYLSEVQRAATYQDWLHYYN---- :: . . Mb2968|M.bovis_AF2122/97 ELVADHERIWAV--HQTVSDPAHVEAAKVLRR------------RHFSAA Rv2943|M.tuberculosis_H37Rv ELVADHERIWAV--HQTVSDPAHVEAAKVLRR------------RHFSAA Mflv_0578|M.gilvum_PYR-GCK KTVAEHERVWAW--HQTITDPEHREAANMLRR------------NRISAL Mvan_3900|M.vanbaalenii_PYR-1 RVVADHERLWGT--AGLVADPEHVAAAAVLRE------------QFHS-- MAV_3533|M.avium_104 VIVAEHELVSPG--EVSILDEHYDGPRPAPSRGPRPK--TQAE-KRFCAL MSMEG_2151|M.smegmatis_MC2_155 GIVIARHRMAADGLGVMVRDSGHVIALDTMAMATASTGRPHRR-KERIPP TH_4229|M.thermoresistible__bu TLVKVHPRQPAGGRSTDRGDLPEHKAGYALRDLAALIAACAAHGPNIGIY MMAR_2619|M.marinum_M -----HHRPHTGIGGKTPIERLRVHNLPVKNT------------------ : : Mb2968|M.bovis_AF2122/97 SPVVEP----QVQVRS---LSDYDDALGVDIDGG--VA------------ Rv2943|M.tuberculosis_H37Rv SPVVEP----QVQVRS---LSDYDDALGVDIDGG--VA------------ Mflv_0578|M.gilvum_PYR-GCK RPVTDSDQQVLVEQRR---LSDYDAALGIDLGEGGLVS------------ Mvan_3900|M.vanbaalenii_PYR-1 RPAASAHLEVSVEVAD---LGAYDAIFGTGEVA----------------- MAV_3533|M.avium_104 GTEAQQFLVGAAAIGNTRLKSELDILLGLGAAHGEQALIDALRRAVAFRR MSMEG_2151|M.smegmatis_MC2_155 GPAAKAAAAQLLHLNDANQEAAESSTWSTDSTVIDLSAYERAAQKRTIQ- TH_4229|M.thermoresistible__bu AERILDDPLPWTRMRTVYRLLGLVRRYGAQRVEAACSLSLDLDVVSVTKI MMAR_2619|M.marinum_M -------------------------------------------------- Mb2968|M.bovis_AF2122/97 -------------------------------------------------- Rv2943|M.tuberculosis_H37Rv -------------------------------------------------- Mflv_0578|M.gilvum_PYR-GCK -------------------------------------------------- Mvan_3900|M.vanbaalenii_PYR-1 -------------------------------------------------- MAV_3533|M.avium_104 FRAADVRSILAAGAGTPQPRPAGDALVLDLPTVETRSLEAYKINTTDGTA MSMEG_2151|M.smegmatis_MC2_155 -------------------------------------------------- TH_4229|M.thermoresistible__bu ASMLERATETCAPALPRAVGQEATRFSRDPSEFSSTPTPLTVISHSESEE MMAR_2619|M.marinum_M -------------------------------------------------- Mb2968|M.bovis_AF2122/97 -- Rv2943|M.tuberculosis_H37Rv -- Mflv_0578|M.gilvum_PYR-GCK -- Mvan_3900|M.vanbaalenii_PYR-1 -- MAV_3533|M.avium_104 S- MSMEG_2151|M.smegmatis_MC2_155 -- TH_4229|M.thermoresistible__bu TR MMAR_2619|M.marinum_M --