For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
AFGDTDDDAQLRAAWHEFCDRLKTAGDLAFKDTSPPNALQRADAFRYLTQNLGQAYDLALETKNTRYPMI HPFCGPTRKLGGDNADFVYLQAWIDGASTYRIAGDRGTARFLNFTVQGPRPEKDVYYGADHPNLHEPFGD TPEANIAGDDLVTEPDGSFELYVGGPRRESNWLPTTPGSRKLFMRQGFDSWTERSAQFSIERIDMDEPRP APTPQDLIASMRWAGDFLTGVMTDWPDRELQIGSLFGEPEPNVFPGARFAGTAEQRDARRGRLIVTMPWH LEPDEALIFEFADDGEFWMLTNMGAFWNSMDYLYRPVSHTPSRSAIDADGRVRMVMSHNDPGVHNWIDTQ QFSEGYLTMRVIGSRQLPEVSTRVVAAAELDTVLPPDTRRVTPEERVVHLHERFDAIRRRYRI*
Operon Prediction Model: Genebank
Paralogs
species | id | gene | e-value | identity (len) | annotation |
M. gilvum PYR-GCK | Mflv_4400 | - | - | 100% (414) | hypothetical protein Mflv_4400 |
M. gilvum PYR-GCK | Mflv_2496 | - | e-133 | 56.90% (413) | hypothetical protein Mflv_2496 |
M. gilvum PYR-GCK | Mflv_4414 | - | 2e-21 | 27.81% (374) | hypothetical protein Mflv_4414 |
Closest Orthologs (e-value cutoff: 1e-4)
species | id | gene | e-value | identity (len) | annotation |
M. bovis AF2122 / 97 | Mb3561c | - | 2e-19 | 25.94% (347) | hypothetical protein Mb3561c |
M. tuberculosis H37Rv | Rv3531c | - | 2e-19 | 25.94% (347) | hypothetical protein Rv3531c |
M. leprae Br4923 | - | - | - | - | - |
M. abscessus ATCC 19977 | MAB_4179c | - | 4e-28 | 29.11% (371) | hypothetical protein MAB_4179c |
M. marinum M | MMAR_0906 | - | 1e-28 | 30.37% (438) | hypothetical protein MMAR_0906 |
M. avium 104 | MAV_0063 | - | 1e-138 | 59.08% (413) | hypothetical protein MAV_0063 |
M. smegmatis MC2 155 | MSMEG_5932 | - | 2e-19 | 27.36% (329) | hypothetical protein MSMEG_5932 |
M. thermoresistible (build 8) | TH_3890 | - | 8e-23 | 26.76% (370) | PUTATIVE putative conserved hypothetical protein |
M. ulcerans Agy99 | MUL_0659 | - | 3e-29 | 30.59% (438) | hypothetical protein MUL_0659 |
M. vanbaalenii PYR-1 | Mvan_4829 | - | 9e-23 | 24.54% (379) | hypothetical protein Mvan_4829 |
CLUSTAL 2.0.9 multiple sequence alignment Mb3561c|M.bovis_AF2122/97 ----------------------MYSDPLREAIAEAEQLVAAAPHIET--- Rv3531c|M.tuberculosis_H37Rv ----------------------MYSDPLREAIAEAEQLVAAAPHIET--- MSMEG_5932|M.smegmatis_MC2_155 ----------------------MYSQPLVDAIAEAERLVAAAPFIES--- Mvan_4829|M.vanbaalenii_PYR-1 MRYFIRNIDHSGPILEHMSEVKMYVQEFLDRIAAAERLVREAPHVES--- MAB_4179c|M.abscessus_ATCC_199 ----------------------MYSEAFTAAIVEAEELIVAAPHIET--- MMAR_0906|M.marinum_M -----------MSAETSQASLHAAWTDMIDALTRARDAVDSAELHAPPVT MUL_0659|M.ulcerans_Agy99 -----------MSAETSQASLHAAWTDMIDALTRARDAVDSAELHAPPVT Mflv_4400|M.gilvum_PYR-GCK ---------MAFGDTDDDAQLRAAWHEFCDRLKTAGDLAFKDTSPPN--- MAV_0063|M.avium_104 -------MNMAFGDGPHDAALRAAWTEFCARLQRAGERAFKDHNPAS--- TH_3890|M.thermoresistible__bu -------------------------------MTGTATAVLAPPGNIG--- : : Mb3561c|M.bovis_AF2122/97 EADLLEGLQYLAGCIAGCMHLAFDY-ERDHPFLQSGTGPFTKMGLDNPDT Rv3531c|M.tuberculosis_H37Rv EADLLEGLQYLAGCIAGCMHLAFDY-ERDHPFLQSGTGPFTKMGLDNPDT MSMEG_5932|M.smegmatis_MC2_155 EADLTEGLQYLAGCVSGCLHLAFDY-DRDHPFLQSGTGPFTKMGLDNPDT Mvan_4829|M.vanbaalenii_PYR-1 EADLLEGLQYLAGCIAACTRLAFDY-DRDHPFLHSGTGPFTKMALDNPDT MAB_4179c|M.abscessus_ATCC_199 EADLLEGLQYLAQGIAACTHMAFHT-DRDHPFLLSGTGPFTKMGLDNPDT MMAR_0906|M.marinum_M AAGLADGYGYLLGFVFSGIERAFGE-NPDFPYFRRAIQPLDKATIDNADA MUL_0659|M.ulcerans_Agy99 AAGLADGYGYLLGFVFSGIERALGE-NPDFPYFRRAIQPLDKATIDNADA Mflv_4400|M.gilvum_PYR-GCK ALQRADAFRYLTQNLGQAYDLALETKNTRYPMIHPFCGPTRKLGGDNADF MAV_0063|M.avium_104 GPHRVDAFRFLTQNLGQAFDLALETRDANYPVLHSFCGPTRKLGGDCADF TH_3890|M.thermoresistible__bu -AATPEGDNIAEMMALAQAQLLQQAADLVRPVWVPFLSKTIRSAGANADT :. : * : .* Mb3561c|M.bovis_AF2122/97 LYFGTRLQANRDYVVSGRRGTTTDLSFQLLGG--EYTDYN--------VP Rv3531c|M.tuberculosis_H37Rv LYFGTRLQANRDYVVSGRRGTTTDLSFQLLGG--EYTDYN--------VP MSMEG_5932|M.smegmatis_MC2_155 LYFGTRVQPGHEYVVTGKRGTTTDLSFQVLGG--EYTDDN--------VP Mvan_4829|M.vanbaalenii_PYR-1 LYFGTWLQGGHEYVLTGRRGTTTDLSFQLLGG--EYTEDN--------VP MAB_4179c|M.abscessus_ATCC_199 LYFGARVSGEYEYVVTGKRGTTTDLSFQVLGGG-DYTDKN--------VP MMAR_0906|M.marinum_M LYLSAPIDGAQSYRVTGRFVGPKPPQYLIFEAHTDYAGDTG--GLAELMP MUL_0659|M.ulcerans_Agy99 LYLSAPIDGAQSYRVTGRFVGPKPPQYLIFEAHIDYAGDTG--GLAELMP Mflv_4400|M.gilvum_PYR-GCK VYLQAWIDGASTYRIAGDRGTARFLNFTVQGPRPEKDVYYGADHPNLHEP MAV_0063|M.avium_104 TYQQAWIDGRSTYRITGTRGTSRFFNVTVQGRRTP-------GEGVLHEP TH_3890|M.thermoresistible__bu TYGVALLEPGGSYRISGRRGTVVFADLLVGAGLLGVVERQ--------QP * : :. * ::* . : * Mb3561c|M.bovis_AF2122/97 AS---QAAFDDRELDIAADGSFEWRLRPS-------------------AP Rv3531c|M.tuberculosis_H37Rv AS---QAAFDDRELDIAADGSFEWRLRPS-------------------AP MSMEG_5932|M.smegmatis_MC2_155 AS---QAAFDDRELDIAEDGTFEWRITPT-------------------SP Mvan_4829|M.vanbaalenii_PYR-1 DN---QFAFDDRELDLAVDGSFEWRFTPN-------------------SD MAB_4179c|M.abscessus_ATCC_199 GS---AIAFDDREIHIDSDGSFEVRFGPAPADDSR-----PNYFTLGPGP MMAR_0906|M.marinum_M GGRVVTGALDTADLAVGEDGRFEILLGPRRPGEHTGNFIATRTPDGTATA MUL_0659|M.ulcerans_Agy99 GGRVVTGALDTADLAVGEDGRFEILLGPRRPGEHTGNFIATRTPDGTATA Mflv_4400|M.gilvum_PYR-GCK FGDTPEANIAGDDLVTEPDGSFELYVGGPRRE--------SNWLPTTPGS MAV_0063|M.avium_104 FGDTPQANLFGQQLRVGADGRFELYVGGPERG--------HNWLPTTPES TH_3890|M.thermoresistible__bu NVG----VVDFTDLDLGDDDTVELILSAERPAGYDG-----HWFRLDPTA . :: *. .* . Mb3561c|M.bovis_AF2122/97 GQLVIREVYGDWSQQRG-TLAIARLDTVGTAPPPLTRELMEKRYATAGSQ Rv3531c|M.tuberculosis_H37Rv GQLVIREVYGDWSQQRG-TLAIARLDTVGTAPPPLTRELMEKRYATAGSQ MSMEG_5932|M.smegmatis_MC2_155 SQLVIREVYNDWSAQRG-HLAIARTDTAGTAPPPLTKELIEKRYAVAGKQ Mvan_4829|M.vanbaalenii_PYR-1 AQLVVREVYNDWSAQRG-TIAIARTDSTGTAPRTLTPELIAIRYAAAGKH MAB_4179c|M.abscessus_ATCC_199 AQLVMREVYSDWREQRG-SLAIARVDTAGTAPAPLTKEQIEKRYASAGKQ MMAR_0906|M.marinum_M RFLIARILFHDWEHEMSPDLHIVQIGKQGAQPEPADPAVVAQNMRRLGTI MUL_0659|M.ulcerans_Agy99 RFLIARILFHDWEHEMSPDLHIVQIGKQGAQPEPADPAVVAQNMRRLGTI Mflv_4400|M.gilvum_PYR-GCK RKLFMRQGFDSWTERSA-QFSIERIDMDEPRPAPTPQDLIAS-MRWAGDF MAV_0063|M.avium_104 RKLFIRQGFDSWDEAPA-QLRIERVDMTVPKPLPTPGEMVEA-MRWAGDF TH_3890|M.thermoresistible__bu DHVWLRQYFYDWETERPWSVTIERLDVAPTDPPKP-----ALRDVEINGF : * : .* . * : . . * . Mb3561c|M.bovis_AF2122/97 LVNRVKTWLQFPQWFYLN-----------IPVNTMVAPRLT----PGGLA Rv3531c|M.tuberculosis_H37Rv LVNRVKTWLQFPQWFYLN-----------IPVNTMVAPRLT----PGGLA MSMEG_5932|M.smegmatis_MC2_155 LVQRVKTWLQFPQWFYNN-----------LPVNTMVAPRLT----PGGLA Mvan_4829|M.vanbaalenii_PYR-1 LTRRIRTWLSFPQWFYLN-----------VPVNTLTAPRIT----PGGLA MAB_4179c|M.abscessus_ATCC_199 LVNRVKTWLQFPKWFYDN-----------LPVNTMTEPRLT----PGGLA MMAR_0906|M.marinum_M VENQMRFWNEFYDVVLEAHGDKNGDGFTLMPRNSLNEPALANLAMGGGQS MUL_0659|M.ulcerans_Agy99 VENQMRFWNEFYDVVLEAHGDKNGDGFTLMPRNSLNEPALANLAMGGGQS Mflv_4400|M.gilvum_PYR-GCK LTGVMTDWPDRELQIGSLFGEP---EPNVFPGARFAGTAEQ----RDARR MAV_0063|M.avium_104 VTGLMSDWPEYPFRHGGVDAE----NPNTFP----RAAATD----ADGKR TH_3890|M.thermoresistible__bu VDRYVSMWQSHVAAMADRG-----------YVNRLETVGLP---DTTGMV : : * . . Mb3561c|M.bovis_AF2122/97 TQYSSAGHFELRPGQALVITVPV-SDAPYLGFQLGSMWYISLDYINHQTS Rv3531c|M.tuberculosis_H37Rv TQYSSAGHFELRPGQALVITVPV-SDAPYLGFQLGSMWYISLDYINHQTS MSMEG_5932|M.smegmatis_MC2_155 TQYSSVGHFDLRPDQAMVITLPV-TDAPYLGFQLGSLWYISLDYINHQTS Mvan_4829|M.vanbaalenii_PYR-1 TQYSSVGHFDLGPGRAMVITLPA-SDAPYLGFQLGSMWYISLDYINHQTS MAB_4179c|M.abscessus_ATCC_199 TQFSSVGHYDLADDQAMIITVPK-SDAPYQGFQLGSLWYISLDYINHQTS MMAR_0906|M.marinum_M TNVYCGGVYDLRADEALLVEVVVPVPPAYMGFHLSNLWGESLDYANHACS MUL_0659|M.ulcerans_Agy99 TNVYCGGVYDLRADEALLVEVVVPVPPAYMGFHLSNLWGESLDYANHACS Mflv_4400|M.gilvum_PYR-GCK GRLIVTMPWHLEPDEALIFEFAD--DGEFWMLTNMGAFWNSMDYLYRPVS MAV_0063|M.avium_104 GRAAANMYWELAPDEALIVEFDA--HPGLWMFTNMGVFFNSMDYLYRPVS TH_3890|M.thermoresistible__bu AQSYFQGVYEIAEDEALLLEVRPPRRCRYWSVQLTDDRYISLDWMWRQTS . :.: ..*::. . . . *:*: : * Mb3561c|M.bovis_AF2122/97 LNASQAQADPDGKVRIVVAEQNPGVTNWVETLGHRRGFLQFRWQRVSREL Rv3531c|M.tuberculosis_H37Rv LNASQAQADPDGKVRIVVAEQNPGVTNWVETLGHRRGFLQFRWQRVSREL MSMEG_5932|M.smegmatis_MC2_155 LNGTQAQEDPDGKIRIVVSDANPGVTNWCETLGHRKGYLQFRWQRLSRAL Mvan_4829|M.vanbaalenii_PYR-1 LNGTQAQVDPDGMIRIVVAHESPGIANWVETLGHRRGYLQFRWQRTSRKL MAB_4179c|M.abscessus_ATCC_199 LNSSQAQIDPDGNIRMVVSNTNPGVTNWIETLGHRRAYLQFRWQRADRQL MMAR_0906|M.marinum_M LNGFQSEPDADARIRYVIADTDPGVPNWLDTAGRLGGFLTLRWTYCD-PP MUL_0659|M.ulcerans_Agy99 LNGFQSEPDADARMRYVIADTDPGVPNWLDTAGRLGGFLTLRWTYCD-PP Mflv_4400|M.gilvum_PYR-GCK HTPSRSAIDADGRVRMVMSHNDPGVHNWIDTQQFSEGYLTMRVIGSR--- MAV_0063|M.avium_104 YTPSRTTVDGDGRIRLVMAHRDPGVHNWLDTQGFERGNLTYRHMLEG--- TH_3890|M.thermoresistible__bu LNGHQARLDPDGVFRAVISHRDPGVHNWLDAAGWTRGTILGRWNRAD--- . :: * *. .* *::. .**: ** :: . : * Mb3561c|M.bovis_AF2122/97 TEADGPTVELVDFDAIPAALPHYQHNKISEDDWRARIALRQRQIATRMLG Rv3531c|M.tuberculosis_H37Rv TEADGPTVELVDFDAIPAALPHYQHNKISEDDWRARIALRQRQIATRMLG MSMEG_5932|M.smegmatis_MC2_155 TEADGPTVEVVDIDQVPEKLPYHESNKISEADWRARIALRQQQIQNRMVG Mvan_4829|M.vanbaalenii_PYR-1 TAAEGPIAEVVDFDAIPSRLPYFGHNTISNDDFRTRIALRQNQIANRMVA MAB_4179c|M.abscessus_ATCC_199 TPADGPTVEVVAVGDIPAKLPHYSQNQISEEGWRSRIAERQTAIGARMLG MMAR_0906|M.marinum_M SELPKASAVKVPLASVRQHLPADTR-TVSVEERRRQISVRQEHVQRRYRQ MUL_0659|M.ulcerans_Agy99 SELPKASAVKVPLASVRQHLPADTR-TVSVEERRRQISVRQEHVQRRYRQ Mflv_4400|M.gilvum_PYR-GCK -QLPEVSTRVVAAAELDTVLPPDTR-RVTPEERVVHLHERFDAIRRRYRI MAV_0063|M.avium_104 -EPAVLDTRVVEHDELLDALPKDTV-MVTPSQRADAMWKRFRGIRRRYVL TH_3890|M.thermoresistible__bu -ANPVPSVKLVDFADLPGFLPADVP-RITSDERRAQLRARAAAAQRMG-- . * : ** :: : * Mb3561c|M.bovis_AF2122/97 - Rv3531c|M.tuberculosis_H37Rv - MSMEG_5932|M.smegmatis_MC2_155 - Mvan_4829|M.vanbaalenii_PYR-1 - MAB_4179c|M.abscessus_ATCC_199 - MMAR_0906|M.marinum_M Y MUL_0659|M.ulcerans_Agy99 Y Mflv_4400|M.gilvum_PYR-GCK - MAV_0063|M.avium_104 - TH_3890|M.thermoresistible__bu -