For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
VNSLWDYVSTHYQQLAFDSYQHVSAVVQSVLLATVIGVAIGVLTYRNSLAANLATATSSVILTVPSFALL GLLIPLFGLGVIPSVAALVLYSLLPIIRNTIVGLNAVDPALTDAARGIGLSRLQTLGRVELRLVWPAILS AMRLSTQMSMGVLAIAAYVKGPGLGNLIFAGLARVGSPTALPMALSGTLLIVILALLLDAALVLLGRLTT SKGIR
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. gilvum PYR-GCK | Mflv_3108 | - | - | 100% (215) | binding-protein-dependent transport systems inner membrane component |
| M. gilvum PYR-GCK | Mflv_1209 | - | 1e-21 | 29.95% (207) | binding-protein-dependent transport systems inner membrane |
| M. gilvum PYR-GCK | Mflv_3110 | - | 2e-20 | 36.10% (205) | binding-protein-dependent transport systems inner membrane |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | Mb3782c | proZ | 3e-21 | 30.21% (192) | osmoprotectant (glycine betaine/carnitine/choline/L-proline) |
| M. tuberculosis H37Rv | Rv3756c | proZ | 3e-21 | 30.21% (192) | osmoprotectant (glycine betaine/carnitine/choline/L-proline) |
| M. leprae Br4923 | MLBr_02093 | pstA1 | 7e-05 | 26.75% (157) | membrane-bound component of phosphate transport |
| M. abscessus ATCC 19977 | MAB_1225 | - | 9e-52 | 46.67% (210) | ABC transporter permease |
| M. marinum M | MMAR_0035 | - | 9e-54 | 47.64% (212) | ABC transporter permease |
| M. avium 104 | MAV_0319 | - | 2e-20 | 28.50% (207) | ABC transporter, permease protein |
| M. smegmatis MC2 155 | MSMEG_2927 | - | 3e-55 | 49.52% (210) | ABC transporter, permease protein OpuCB |
| M. thermoresistible (build 8) | TH_0698 | - | 4e-55 | 48.57% (210) | ABC transporter, permease protein OpuCB |
| M. ulcerans Agy99 | MUL_0034 | - | 1e-51 | 46.23% (212) | ABC transporter permease |
| M. vanbaalenii PYR-1 | Mvan_5599 | - | 2e-21 | 29.47% (207) | binding-protein-dependent transport systems inner membrane |
CLUSTAL 2.0.9 multiple sequence alignment
Mb3782c|M.bovis_AF2122/97 ---------------------------------------------MNFLQ
Rv3756c|M.tuberculosis_H37Rv ---------------------------------------------MNFLQ
MAB_1225|M.abscessus_ATCC_1997 --------------------------------------------------
MSMEG_2927|M.smegmatis_MC2_155 --------------------------------------------------
MMAR_0035|M.marinum_M -------------------------------------------MEAATEF
MUL_0034|M.ulcerans_Agy99 --------------------------------------------------
TH_0698|M.thermoresistible__bu --------------------------------------------------
Mflv_3108|M.gilvum_PYR-GCK --------------------------------------------------
MAV_0319|M.avium_104 --------------------------------------------------
Mvan_5599|M.vanbaalenii_PYR-1 --------------------------------------------------
MLBr_02093|M.leprae_Br4923 MNLDTLDRPVKAVVLRPISVRRRIKNNVATMFFFTSFLIALVPLVWLLSV
Mb3782c|M.bovis_AF2122/97 QALSYLLTASNWTGP---------VGLAVRTCEHLEYTAVAVAASALIAV
Rv3756c|M.tuberculosis_H37Rv QALSYLLTASNWTGP---------VGLAVRTCEHLEYTAVAVAASALIAV
MAB_1225|M.abscessus_ATCC_1997 MG-FVEFVKDRWA------------VLSFLAYQHMSLVLQTLVVAAMCAV
MSMEG_2927|M.smegmatis_MC2_155 MG-FVEFVQDRWA------------VLSFLAYQHMSFVVQTLLIATAAAL
MMAR_0035|M.marinum_M MG-LYDFVVDRWS------------VLWFLAYQHISLVGQTLILATAIAL
MUL_0034|M.ulcerans_Agy99 MG-LYDFVVDRWS------------VLWFLAYQHISLVGQALILATAIAL
TH_0698|M.thermoresistible__bu MD-FIEFVRERWS------------VLSFLAYQHMSLVVQTLLLSTLLAV
Mflv_3108|M.gilvum_PYR-GCK MNSLWDYVSTHYQ------------QLAFDSYQHVSAVVQSVLLATVIGV
MAV_0319|M.avium_104 ----MHYLLTHLD------------DAARLTVVHLRLSLVPVLIGLAIAL
Mvan_5599|M.vanbaalenii_PYR-1 ----MRYLVTHLD------------ALWTLSLIHLRLSLIPILLGLLIAV
MLBr_02093|M.leprae_Br4923 VVARGFYAVTRFDWWTHSLRGVMPEEFAGGVYHALYGSLVQAVVAAIMAV
. : . .:
Mb3782c|M.bovis_AF2122/97 PVG------LLIGHTGRGTLLVVGAVNGLRALP----TLGVLLLGVLLFG
Rv3756c|M.tuberculosis_H37Rv PVG------LLIGHTGRGTLLVVGAVNGLRALP----TLGVLLLGVLLFG
MAB_1225|M.abscessus_ATCC_1997 FLG------VLIYRSPWGVASGNALAAIGLTIP----SYALLGVLVGVVG
MSMEG_2927|M.smegmatis_MC2_155 VVG------VLIYRSPWASAIGNTLTSVGLTIP----SYALLGVLVAFIG
MMAR_0035|M.marinum_M ILG------VLIYNSPLGVAAGNAVTAVGLTIP----SYALLGVLVGIVG
MUL_0034|M.ulcerans_Agy99 ILG------VLIYNSPLRVAAGNAVTAVGLTIP----SYALLGVLVGIVG
TH_0698|M.thermoresistible__bu AVG------VMLYRSTWGRSLGDSVTSLGLTVP----SYALLGVLVGIFG
Mflv_3108|M.gilvum_PYR-GCK AIG------VLTYRNSLAANLATATSSVILTVP----SFALLGLLIPLFG
MAV_0319|M.avium_104 PLG------MLVQRRRFARRLTTAVASVVFTIP----SLALFVVLPMIIG
Mvan_5599|M.vanbaalenii_PYR-1 PLG------ALVQRTTVLRRLTTVTASIVFTIP----SLALFVVLPLIIP
MLBr_02093|M.leprae_Br4923 PLGSMTAVYLVEYGSGPFVRVTTFMVDVLAGVPSIVAALFIFCLWIATLG
:* : :* : :: : .
Mb3782c|M.bovis_AF2122/97 ---LGLGPPLVALMLLGIPSLLASTYAGIASVDPLVVDAARAMGMTESQV
Rv3756c|M.tuberculosis_H37Rv ---LGLGPPLVALMLLGIPSLLASTYAGIASVDPLVVDAARAMGMTESQV
MAB_1225|M.abscessus_ATCC_1997 ---IGVSPSVIMLVFFGSLPILRNVLVGLTGVDQTLVESARGMGMSRLAT
MSMEG_2927|M.smegmatis_MC2_155 ---IGVLPSVIMLVFFGFLPILRNVLVGLGGVDRALIESARGMGMSRLST
MMAR_0035|M.marinum_M ---LGVLPSVIMLTFFGVFPILRNVVVGLTGVDKGLVESARGMGMSRLTT
MUL_0034|M.ulcerans_Agy99 ---LGVLPSVIMPTFFGVFPILRNVVVGLTGVDKGLVESARGMGMSRLTT
TH_0698|M.thermoresistible__bu ---VGVLPSVVLLTFFGFLPILRNVLVGLNGVDAGLVESARAMGMSRPAT
Mflv_3108|M.gilvum_PYR-GCK ---LGVIPSVAALVLYSLLPIIRNTIVGLNAVDPALTDAARGIGLSRLQT
MAV_0319|M.avium_104 TRILDEANVMVALTAYTAALLVRAVLEALDAVPAQISDAATAVGYPRLTR
Mvan_5599|M.vanbaalenii_PYR-1 TRILDEANVIVALTLYTVALLVRAVPEALDAVSPAVLDAATAVGYRPLTR
MLBr_02093|M.leprae_Br4923 -FQQSAFAVSLALVLLMLPVVVRSTEEILRLVPDELREACYALGIPKWKT
. :: . : * : ::. .:*
Mb3782c|M.bovis_AF2122/97 LLRVEVPNALPLMLGGLRSATLQVVATATVAAYAS--LGGLGGYLIDG--
Rv3756c|M.tuberculosis_H37Rv LLRVEVPNALPLMLGGLRSATLQVVATATVAAYAS--LGGLGGYLIDG--
MAB_1225|M.abscessus_ATCC_1997 LVRLELPLAWPVIMTGIRVSAQMLMGTAAIAAFAL--GPGLGGYIFSG--
MSMEG_2927|M.smegmatis_MC2_155 LLRLEIPLAWPVIMTGVRVSAQMLMGVAAIAAYAL--GPGLGGYIFSG--
MMAR_0035|M.marinum_M LVRLELPLAWPVIMTGVRVSAQMLMGIAAIVAFAL--GPGLGGYIFSG--
MUL_0034|M.ulcerans_Agy99 LVRLELPLAWPVIMTGVRVSAQMLMGIAAIVAFAL--GPGLGGYIFSG--
TH_0698|M.thermoresistible__bu LLRLELPLAWPVIMTGVRISAQMLMGIAAIAAFAL--GPGLGGYIFSG--
Mflv_3108|M.gilvum_PYR-GCK LGRVELRLVWPAILSAMRLSTQMSMGVLAIAAYVK--GPGLGNLIFAG--
MAV_0319|M.avium_104 MMKVELPLAVPVLIAGLRVVVVTNIAMVSVGSVIG--IGGLGSWFTQG--
Mvan_5599|M.vanbaalenii_PYR-1 MLKIELPLALPVLIASLRVVAVTNISMVAVGSVIG--IGGLGTWFTEG--
MLBr_02093|M.leprae_Br4923 IVRIVFPIATPGIISGVLLSIARVIGETAPVLVLVGYSRSINFDIFDGNM
: :: . . * :: .: :. : .:. : *
Mb3782c|M.bovis_AF2122/97 --IKER----RFHIALVGAMMVAALALTLDGLLALAGWVSVPGTGRMRKL
Rv3756c|M.tuberculosis_H37Rv --IKER----RFHIALVGAMMVAALALTLDGLLALAGWVSVPGTGRMRKL
MAB_1225|M.abscessus_ATCC_1997 --ISRMGGANATNSVIAGTVGILILAVILDSVLNVVTRLTTPRGIRV---
MSMEG_2927|M.smegmatis_MC2_155 --ISRTGGANATNSIVAGTVGILILAVVLDTVLNIITRLTTPRGIRV---
MMAR_0035|M.marinum_M --ISRMGGANATNSIVAATIGILILAVILDTVLNLIARLTTPRGIRA---
MUL_0034|M.ulcerans_Agy99 --ISRMGGANATNSIVAATIGILILAVILDTVLNVIARLTTPREIRA---
TH_0698|M.thermoresistible__bu --ISRMGGANATNSIIVATVGILLLAVILDAVLNLVTRLTTPRGIRV---
Mflv_3108|M.gilvum_PYR-GCK --LARVGSPTALPMALSGTLLIVILALLLDAALVLLGRLTTSKGIR----
MAV_0319|M.avium_104 --YQTG----KSDQILAGIIALFALAVAVDGLIVLGGRLVTPWAHAVRGG
Mvan_5599|M.vanbaalenii_PYR-1 --YQAN----KSDQIIAGIVAIFVLAIVIDTLIMLAGKALTPWTRAQPRA
MLBr_02093|M.leprae_Br4923 ASLPLLIYTELTNPEYAGFLRVWGAALTLIILVAGINLFGAAFRFLATRR
. : : *: : : ..
Mb3782c|M.bovis_AF2122/97 AAVVDKPAAGGGHALR
Rv3756c|M.tuberculosis_H37Rv AAVVDKPAAGGGHALR
MAB_1225|M.abscessus_ATCC_1997 ----------------
MSMEG_2927|M.smegmatis_MC2_155 ----------------
MMAR_0035|M.marinum_M ----------------
MUL_0034|M.ulcerans_Agy99 ----------------
TH_0698|M.thermoresistible__bu ----------------
Mflv_3108|M.gilvum_PYR-GCK ----------------
MAV_0319|M.avium_104 ARRSVVAPVVGGAR--
Mvan_5599|M.vanbaalenii_PYR-1 TR--APRAEAGAPT--
MLBr_02093|M.leprae_Br4923 CSGCR-----------