For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
PILRFVARRLLYSAVVMFGVLLVVFALVHLVPGDPVRIALGTRYTPEAYEALRAASGLDRPLVSQFFGYI GSALTGDLGVSFRNGDPVTVTLLERLPATLSLGLAGIVIALAIALPAGIYAALREGRLSDALVRISSQFG VSIPDFWMGILLIALFSTVLGWLPTSGYRPLFEDPAGWLRHIILPALTVAVVAAAIMTRYVRAAVLEVAS MGYVRTARSKGLTPRVVTFRHTVRNALVPILTITGIQLATLLGGVIVVEVVFAWPGLGRLVFNAVAARDY PLIQGAVLLIAALFLLINLLVDVLYAVVDPRIRLG*
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. gilvum PYR-GCK | Mflv_2760 | - | - | 100% (316) | binding-protein-dependent transport systems inner membrane component |
| M. gilvum PYR-GCK | Mflv_0118 | - | 3e-42 | 33.65% (318) | binding-protein-dependent transport systems inner membrane |
| M. gilvum PYR-GCK | Mflv_2261 | - | 3e-38 | 32.42% (330) | binding-protein-dependent transport systems inner membrane |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | Mb3689c | dppB | 2e-50 | 36.62% (314) | peptide ABC transporter transmembrane protein |
| M. tuberculosis H37Rv | Rv3665c | dppB | 2e-50 | 36.62% (314) | peptide ABC transporter transmembrane protein |
| M. leprae Br4923 | MLBr_01124 | - | 5e-42 | 32.31% (325) | putative binding-protein dependent transport protein |
| M. abscessus ATCC 19977 | MAB_0427 | - | 5e-58 | 38.02% (313) | peptide ABC transporter transmembrane protein |
| M. marinum M | MMAR_5153 | dppB | 5e-53 | 37.58% (314) | dipeptide-transport integral membrane protein ABC |
| M. avium 104 | MAV_0465 | dppB | 2e-52 | 37.38% (313) | ABC transporter, permease protein DppB |
| M. smegmatis MC2 155 | MSMEG_4355 | - | 1e-154 | 85.99% (314) | peptide ABC transporter, permease protein |
| M. thermoresistible (build 8) | TH_2645 | - | 1e-144 | 79.94% (314) | PUTATIVE binding-protein-dependent transport systems inner |
| M. ulcerans Agy99 | MUL_4239 | dppB | 5e-52 | 37.26% (314) | dipeptide-transport integral membrane protein ABC |
| M. vanbaalenii PYR-1 | Mvan_3774 | - | 1e-167 | 93.99% (316) | binding-protein-dependent transport systems inner membrane |
CLUSTAL 2.0.9 multiple sequence alignment
Mflv_2760|M.gilvum_PYR-GCK --------------MPILRFVARRLLYSAVVMFGVLLVVFALVHLVPGDP
Mvan_3774|M.vanbaalenii_PYR-1 ----------MSTAMPVLRFVARRLLFSAVVMIGVLVVVFALVHLVPGDP
MSMEG_4355|M.smegmatis_MC2_155 -----MTSTRLLGNHPIVRFLAQRLLYSAVVLVGVLIVVFTLVHLVPGDP
TH_2645|M.thermoresistible__bu ---------MRFVTHPIARFLGRRLLYSLAVLFGVLVVVFGLMQLVPGDP
Mb3689c|M.bovis_AF2122/97 ----------------MGWYVARRVAVMVPVFLGATLLIYGMVFLLPGDP
Rv3665c|M.tuberculosis_H37Rv ----------------MGWYVARRVAVMVPVFLGATLLIYGMVFLLPGDP
MAV_0465|M.avium_104 ----------------MGWYIARRIAVMVPVFLGATLLIYAMVFLLPGDP
MMAR_5153|M.marinum_M ----------------MVWYVARRILAMVPVFLGATLLIYGMVFLLPGDP
MUL_4239|M.ulcerans_Agy99 ----------------MVWYVARRILAMVPVFLGATLLIYGMVFLLPGDP
MAB_0427|M.abscessus_ATCC_1997 MTTVLGNVRQFWQSAGLFRYIAKRLLLAIPVLIGTSLLIYSLVYALPGDP
MLBr_01124|M.leprae_Br4923 ----------------MMRFLARRLLNYVVLLALASFLTYCLTSMAFAPL
: ::.:*: :: . .: : : .
Mflv_2760|M.gilvum_PYR-GCK VRIALGTR-YTPEAYEALRAASGLDRPLVSQFFGYIGSALTGDLGVSFRN
Mvan_3774|M.vanbaalenii_PYR-1 VRIALGTR-YTPEAYEALRAASGLDRPIVSQFFGYLGSALTGDLGVSFRN
MSMEG_4355|M.smegmatis_MC2_155 VRIALGTR-YTPEAYEALRTASGMDRPIVEQFFGYIGSALTGDLGVSFRN
TH_2645|M.thermoresistible__bu VRIALGTR-YTPEAYQALRSASGLDRPILEQFVGYLTSAVRGDLGVSFRN
Mb3689c|M.bovis_AF2122/97 VAALAGDRPLTPAVAAQLRSHYHLDDPFLVQYLRYLGGILHGDLGRAYS-
Rv3665c|M.tuberculosis_H37Rv VAALAGDRPLTPAVAAQLRSHYHLDDPFLVQYLRYLGGILHGDLGRAYS-
MAV_0465|M.avium_104 VAAIAGDRPLTPAVAAALRARYHLDDPFLVQYLRYLGGVLRGDLGRAYS-
MMAR_5153|M.marinum_M LAAIAGDRPLTPAVAQQLRARYHLDDPFLVQYAHYLGGVLHGDLGRAYS-
MUL_4239|M.ulcerans_Agy99 LAAIAGDRPLTPAVAQQLRARYHLDDPFLVQYAHYLGGVLHGDLGRAYS-
MAB_0427|M.abscessus_ATCC_1997 IRALAGDRPFTPEVMAQLRERFHLNDPFLVRYGKYIVGFLHGDFGTDFQ-
MLBr_01124|M.leprae_Br4923 DSLLQRSPHPPQAMVDAKAHALGLDKPIPIRYANWASHAIRGDFGTTIT-
. :: *: :: : : **:*
Mflv_2760|M.gilvum_PYR-GCK GDPVTVTLLERLPATLSLGLAGIVIALAIALPAGIYAALREGRLSDALVR
Mvan_3774|M.vanbaalenii_PYR-1 GDPVTLTLLERLPATLSLGLVGIVIALAIALPAGIYAALREGRLSDALVR
MSMEG_4355|M.smegmatis_MC2_155 GDPVTVTLLERLPATLSLGLVGILIALVIAIPAGIWSALREGRVSDAIVR
TH_2645|M.thermoresistible__bu GDPVTLVLLERLPATVSLALAGIAIALAIALPAGIWSALRDGRAGAAAVR
Mb3689c|M.bovis_AF2122/97 GLPVSAVLAHAFPVTIRLALIALAVEAVLGIGFGVIAGLRQGGIFDSAVL
Rv3665c|M.tuberculosis_H37Rv GLPVSAVLAHAFPVTIRLALIALAVEAVLGIGFGVIAGLRQGGIFDSAVL
MAV_0465|M.avium_104 GLPVSDVLAHAFPVTLRLSLIALAVEAVLGIGFGVIAGLRQGGLFDSAVL
MMAR_5153|M.marinum_M GLPVSAVLAHAFPVTIRLALIALAVEAVLGIGFGVIAGLRQGGIFDATVL
MUL_4239|M.ulcerans_Agy99 GLPVSAVLAHAFPVTIRLAWIALAVEAVLGIGFGVIAGLRQGGIFDATVL
MAB_0427|M.abscessus_ATCC_1997 QRPVAQTVSQRLPVTLRLTVVAVAFETIIGITAGVLCAVRRGSFYDNLVL
MLBr_01124|M.leprae_Br4923 GQPVGSTLGRRVGVSLRLLIIGSLTGTVLGVTAGAWGAIRQYQLSDRVVT
** .: . . .:: * . :.: * .:* *
Mflv_2760|M.gilvum_PYR-GCK ISSQFGVSIPDFWMG---ILLIALFSTVLGWLPTSGYRPLFEDPAG----
Mvan_3774|M.vanbaalenii_PYR-1 ISSQFGVSIPDFWMG---ILLIALFSTVLGWLPTSGYRPLTEDPAG----
MSMEG_4355|M.smegmatis_MC2_155 VASQFGVSIPDFRLG---ILLIGLFASVLGWLPTSGYRPLFDDPGG----
TH_2645|M.thermoresistible__bu VASQVGVSVPDFWMG---ILLIALFASTLGWLPTSGYRALSDDPVG----
Mb3689c|M.bovis_AF2122/97 VTGLVIIAIPIFVLG---FLAQFLFGVQLEIAPVT------VGERA----
Rv3665c|M.tuberculosis_H37Rv VTGLVIIAIPIFVLG---FLAQFLFGVQLEIAPVT------VGERA----
MAV_0465|M.avium_104 ITGLVIIAVPIFVLG---FLAQFVFGVRLGIAPVT------VGNAA----
MMAR_5153|M.marinum_M LTGLIIIAVPIFVLG---FLAQYLFGVRLGLAPVT------VGART----
MUL_4239|M.ulcerans_Agy99 LTGLIIIAAPIFVLG---FLAQYLFGVRLGLAPVT------VGART----
MAB_0427|M.abscessus_ATCC_1997 VTTTLLVSMPVFVLG---FLAQYLFGFKLGWFPI-------AGIRD----
MLBr_01124|M.leprae_Br4923 LLALLVLSTPTFVIANLLILSALRVNWAFGIQLFDYTGETSPGVYGGAWA
: . :: * * :. :* . : .
Mflv_2760|M.gilvum_PYR-GCK ----WLRHIILPALTVAVVAAAIMTRYVRAAVLEVASMGYVRTARSKGLT
Mvan_3774|M.vanbaalenii_PYR-1 ----WLRHVVLPGLTVGVVAAAIMTRYVRSAVLEVAAMGYVRTARSKGLS
MSMEG_4355|M.smegmatis_MC2_155 ----WLRHIILPGLTVGLVAGAILTRYVRSAVLEVAAMGYVRTARSKGLP
TH_2645|M.thermoresistible__bu ----WLRHLVLPALTVGLVAAAIMTRYIRSAVLEVAAAGHVRTARSKGLS
Mb3689c|M.bovis_AF2122/97 ----SVGRLLLPGIVLGAMSFAYVVRLTRSAVAANAHADYVRTATAKGLS
Rv3665c|M.tuberculosis_H37Rv ----SVGRLLLPGIVLGAMSFAYVVRLTRSAVAANAHADYVRTATAKGLS
MAV_0465|M.avium_104 ----TFTRLLLPGIVLGSVSFAYVVRLTRSTVAVNAHADYVRTATAKGLS
MMAR_5153|M.marinum_M ----TLDRLLLPGMVLGAVSFAYVVRLTRSAVAANAHADYVRTATAKGLS
MUL_4239|M.ulcerans_Agy99 ----TLDRLLLPGMVLGAVSFAYVVRLTRSAVAANAHADYVRTATAKGLS
MAB_0427|M.abscessus_ATCC_1997 ----GWYSFLLPGLVLASLSMAYVARLTRTSMLETMDAEFVRTARAKGIS
MLBr_01124|M.leprae_Br4923 HVIDRLRHLILPTLTLALVGAAGYSRYQRNAMLDVLSQDFIRAARAKGLT
.:** :.:. :. * * * :: .:*:* :**:.
Mflv_2760|M.gilvum_PYR-GCK PRVVTFRHTVRNALVPILTITGIQLATLLGGVIVVEVVFAWPGLGRLVFN
Mvan_3774|M.vanbaalenii_PYR-1 PRIVTFRHTVRNALVPILTITGIQLATLLGGVIVVEVVFAWPGLGRLVFN
MSMEG_4355|M.smegmatis_MC2_155 PPVVTFRHIVRNALLPVLTITGIQLATILGGVIVVEVVFAWPGLGRLVFN
TH_2645|M.thermoresistible__bu PWVLTVRHTVRNALIPVLTITGIQLATILGGVIVVEVVFAWPGLGRLVYN
Mb3689c|M.bovis_AF2122/97 RPRVVTVHILRNSLIPVVTFLGADLGALMGGAIVTEGIFNIHGVGGVLYQ
Rv3665c|M.tuberculosis_H37Rv RPRVVTVHILRNSLIPVVTFLGADLGALMGGAIVTEGIFNIHGVGGVLYQ
MAV_0465|M.avium_104 RPRVVTVHILRNSLIPVVTFLGADLGALMGGAIVTEGIFNIHGVGGVLYQ
MMAR_5153|M.marinum_M RPRVVTVHILRNSLIPVVTFLGADLGALMGGAVVTEGIFNIHGVGGVLYQ
MUL_4239|M.ulcerans_Agy99 RPRVVTVHILRNSLIPVVTFLGADLGALMGGAVVTEGIFNIHGVGGVLYQ
MAB_0427|M.abscessus_ATCC_1997 ESRILLRHTLRNSLIPVVTFIGADVGALLAGAVVTESVFNIPGLGRATFD
MLBr_01124|M.leprae_Br4923 RRRALLKHGLRTALIPMATLFAYGVAGLVTGALFVEKIFGWHGMGEWMVQ
* :*.:*:*: *: . :. :: *.:..* :* *:* :
Mflv_2760|M.gilvum_PYR-GCK AVAARDYPLIQGAVLLIAALFLLINLLVDVLYAVVDPRIRLG
Mvan_3774|M.vanbaalenii_PYR-1 AVAARDYPLIQGAVLLIAALFLVINLLVDVLYAVVDPRIRLG
MSMEG_4355|M.smegmatis_MC2_155 SVAARDYPVIQGAVLLIAVLFLLINLLVDVLYAVVDPRIRLS
TH_2645|M.thermoresistible__bu AVAARDYPVIQGAVLLIAALFLLINLLVDLLYAIVDPRIRLA
Mb3689c|M.bovis_AF2122/97 AVTRQETPTVVSIVTVLVLIYLITNLLVDLLYAALDPRIRYG
Rv3665c|M.tuberculosis_H37Rv AVTRQETPTVVSIVTVLVLIYLITNLLVDLLYAALDPRIRYG
MAV_0465|M.avium_104 AVTRQEAPTVVSIVTVLVLIYLVTNLVVDLLYAVLDPRIRYG
MMAR_5153|M.marinum_M AVTRQEAPTVVSIVTVLVMVYLLTNLLVDLLYAALDPRIRYG
MUL_4239|M.ulcerans_Agy99 AVTRQEAPTVVSIVTVLVMVYLLTNLLVDLLYAALDPRIRYG
MAB_0427|M.abscessus_ATCC_1997 AVRNQEGAVVVSILTLIVFFYIFFNLVVDILYALLDPRIRYE
MLBr_01124|M.leprae_Br4923 GVATQDTNIIAAITIFFGTVILLAGLLSDVIYAALDPRVRVS
.* :: : . .: . :. .*: *::** :***:*