For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
VWYVARRILAMVPVFLGATLLIYGMVFLLPGDPLAAIAGDRPLTPAVAQQLRARYHLDDPFLVQYAHYLG GVLHGDLGRAYSGLPVSAVLAHAFPVTIRLAWIALAVEAVLGIGFGVIAGLRQGGIFDATVLLTGLIIIA APIFVLGFLAQYLFGVRLGLAPVTVGARTTLDRLLLPGMVLGAVSFAYVVRLTRSAVAANAHADYVRTAT AKGLSRPRVVTVHILRNSLIPVVTFLGADLGALMGGAVVTEGIFNIHGVGGVLYQAVTRQEAPTVVSIVT VLVMVYLLTNLLVDLLYAALDPRIRYG*
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. ulcerans Agy99 | MUL_4239 | dppB | - | 100% (308) | dipeptide-transport integral membrane protein ABC transporter DppB |
| M. ulcerans Agy99 | MUL_3999 | oppB | 4e-36 | 33.33% (324) | oligopeptide-transport integral membrane protein ABC |
| M. ulcerans Agy99 | MUL_4238 | dppC | 1e-06 | 23.94% (213) | dipeptide-transport integral membrane protein ABC |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | Mb3689c | dppB | 1e-155 | 88.96% (308) | peptide ABC transporter transmembrane protein |
| M. gilvum PYR-GCK | Mflv_2760 | - | 6e-52 | 37.26% (314) | binding-protein-dependent transport systems inner membrane |
| M. tuberculosis H37Rv | Rv3665c | dppB | 1e-155 | 88.96% (308) | peptide ABC transporter transmembrane protein |
| M. leprae Br4923 | MLBr_01124 | - | 1e-36 | 31.48% (324) | putative binding-protein dependent transport protein |
| M. abscessus ATCC 19977 | MAB_0427 | - | 5e-92 | 52.96% (304) | peptide ABC transporter transmembrane protein |
| M. marinum M | MMAR_5153 | dppB | 1e-169 | 99.35% (308) | dipeptide-transport integral membrane protein ABC |
| M. avium 104 | MAV_0465 | dppB | 1e-152 | 87.34% (308) | ABC transporter, permease protein DppB |
| M. smegmatis MC2 155 | MSMEG_6866 | - | 2e-52 | 38.87% (301) | dipeptide transport system permease protein DppB |
| M. thermoresistible (build 8) | TH_2645 | - | 1e-51 | 38.78% (312) | PUTATIVE binding-protein-dependent transport systems inner |
| M. vanbaalenii PYR-1 | Mvan_3774 | - | 9e-54 | 37.70% (313) | binding-protein-dependent transport systems inner membrane |
CLUSTAL 2.0.9 multiple sequence alignment
Mflv_2760|M.gilvum_PYR-GCK -----------------MP-------ILRFVARRLLYSAVVMFGVLLVVF
Mvan_3774|M.vanbaalenii_PYR-1 -------------MSTAMP-------VLRFVARRLLFSAVVMIGVLVVVF
TH_2645|M.thermoresistible__bu ------------MRFVTHP-------IARFLGRRLLYSLAVLFGVLVVVF
MSMEG_6866|M.smegmatis_MC2_155 MTDLLAGPAPIRAAAQRHPGGTRALNMGRVVLGKVASALIVLFVVATVAF
MUL_4239|M.ulcerans_Agy99 --------------------------MVWYVARRILAMVPVFLGATLLIY
MMAR_5153|M.marinum_M --------------------------MVWYVARRILAMVPVFLGATLLIY
Mb3689c|M.bovis_AF2122/97 --------------------------MGWYVARRVAVMVPVFLGATLLIY
Rv3665c|M.tuberculosis_H37Rv --------------------------MGWYVARRVAVMVPVFLGATLLIY
MAV_0465|M.avium_104 --------------------------MGWYIARRIAVMVPVFLGATLLIY
MAB_0427|M.abscessus_ATCC_1997 MTTVLG-----NVRQFWQSAG-----LFRYIAKRLLLAIPVLIGTSLLIY
MLBr_01124|M.leprae_Br4923 --------------------------MMRFLARRLLNYVVLLALASFLTY
: : :: :: . : :
Mflv_2760|M.gilvum_PYR-GCK ALVHLVPGDPVRIALGTR-YTPEAYEALRAASGLDRPLVSQFFGYIGSAL
Mvan_3774|M.vanbaalenii_PYR-1 ALVHLVPGDPVRIALGTR-YTPEAYEALRAASGLDRPIVSQFFGYLGSAL
TH_2645|M.thermoresistible__bu GLMQLVPGDPVRIALGTR-YTPEAYQALRSASGLDRPILEQFVGYLTSAV
MSMEG_6866|M.smegmatis_MC2_155 LLVRMS-GDPLALLLPPD-ATQQQVEQLAAELGLDQPLLVQYLHYLSGML
MUL_4239|M.ulcerans_Agy99 GMVFLLPGDPLAAIAGDRPLTPAVAQQLRARYHLDDPFLVQYAHYLGGVL
MMAR_5153|M.marinum_M GMVFLLPGDPLAAIAGDRPLTPAVAQQLRARYHLDDPFLVQYAHYLGGVL
Mb3689c|M.bovis_AF2122/97 GMVFLLPGDPVAALAGDRPLTPAVAAQLRSHYHLDDPFLVQYLRYLGGIL
Rv3665c|M.tuberculosis_H37Rv GMVFLLPGDPVAALAGDRPLTPAVAAQLRSHYHLDDPFLVQYLRYLGGIL
MAV_0465|M.avium_104 AMVFLLPGDPVAAIAGDRPLTPAVAAALRARYHLDDPFLVQYLRYLGGVL
MAB_0427|M.abscessus_ATCC_1997 SLVYALPGDPIRALAGDRPFTPEVMAQLRERFHLNDPFLVRYGKYIVGFL
MLBr_01124|M.leprae_Br4923 CLTSMAFAPLDSLLQRSPHPPQAMVDAKAHALGLDKPIPIRYANWASHAI
: . . *: *: :: : :
Mflv_2760|M.gilvum_PYR-GCK TGDLGVSFRNGDPVTVTLLERLPATLSLGLAGIVIALAIALPAGIYAALR
Mvan_3774|M.vanbaalenii_PYR-1 TGDLGVSFRNGDPVTLTLLERLPATLSLGLVGIVIALAIALPAGIYAALR
TH_2645|M.thermoresistible__bu RGDLGVSFRNGDPVTLVLLERLPATVSLALAGIAIALAIALPAGIWSALR
MSMEG_6866|M.smegmatis_MC2_155 HGDLGQSIFFDQPVVSLIGERLPATALLAVAALVLSLVISLPAGILASAH
MUL_4239|M.ulcerans_Agy99 HGDLGRAYS-GLPVSAVLAHAFPVTIRLAWIALAVEAVLGIGFGVIAGLR
MMAR_5153|M.marinum_M HGDLGRAYS-GLPVSAVLAHAFPVTIRLALIALAVEAVLGIGFGVIAGLR
Mb3689c|M.bovis_AF2122/97 HGDLGRAYS-GLPVSAVLAHAFPVTIRLALIALAVEAVLGIGFGVIAGLR
Rv3665c|M.tuberculosis_H37Rv HGDLGRAYS-GLPVSAVLAHAFPVTIRLALIALAVEAVLGIGFGVIAGLR
MAV_0465|M.avium_104 RGDLGRAYS-GLPVSDVLAHAFPVTLRLSLIALAVEAVLGIGFGVIAGLR
MAB_0427|M.abscessus_ATCC_1997 HGDFGTDFQ-QRPVAQTVSQRLPVTLRLTVVAVAFETIIGITAGVLCAVR
MLBr_01124|M.leprae_Br4923 RGDFGTTIT-GQPVGSTLGRRVGVSLRLLIIGSLTGTVLGVTAGAWGAIR
**:* ** : . . .: * . :.: * . :
Mflv_2760|M.gilvum_PYR-GCK EGRLSDALVRISSQFGVSIPDFWMG-ILLIALFSTVLGWLPT-SGYRPLF
Mvan_3774|M.vanbaalenii_PYR-1 EGRLSDALVRISSQFGVSIPDFWMG-ILLIALFSTVLGWLPT-SGYRPLT
TH_2645|M.thermoresistible__bu DGRAGAAAVRVASQVGVSVPDFWMG-ILLIALFASTLGWLPT-SGYRALS
MSMEG_6866|M.smegmatis_MC2_155 RGRITDTVISGIVLIGQSTPAFWIG-ILFILLFAVRLRVLPA-AGY----
MUL_4239|M.ulcerans_Agy99 QGGIFDATVLLTGLIIIAAPIFVLG-FLAQYLFGVRLGLAPVTVGART--
MMAR_5153|M.marinum_M QGGIFDATVLLTGLIIIAVPIFVLG-FLAQYLFGVRLGLAPVTVGART--
Mb3689c|M.bovis_AF2122/97 QGGIFDSAVLVTGLVIIAIPIFVLG-FLAQFLFGVQLEIAPVTVGERA--
Rv3665c|M.tuberculosis_H37Rv QGGIFDSAVLVTGLVIIAIPIFVLG-FLAQFLFGVQLEIAPVTVGERA--
MAV_0465|M.avium_104 QGGLFDSAVLITGLVIIAVPIFVLG-FLAQFVFGVRLGIAPVTVGNAA--
MAB_0427|M.abscessus_ATCC_1997 RGSFYDNLVLVTTTLLVSMPVFVLG-FLAQYLFGFKLGWFPI-AGIRD--
MLBr_01124|M.leprae_Br4923 QYQLSDRVVTLLALLVLSTPTFVIANLLILSALRVNWAFGIQLFDYTGET
: . : * * :. :* : .
Mflv_2760|M.gilvum_PYR-GCK ED---------PAGWLRHIILPALTVAVVAAAIMTRYVRAAVLEVASMGY
Mvan_3774|M.vanbaalenii_PYR-1 ED---------PAGWLRHVVLPGLTVGVVAAAIMTRYVRSAVLEVAAMGY
TH_2645|M.thermoresistible__bu DD---------PVGWLRHLVLPALTVGLVAAAIMTRYIRSAVLEVAAAGH
MSMEG_6866|M.smegmatis_MC2_155 -------------GGAAHLVLPAITLAIYSIAVVARVLRTSLAEELSADY
MUL_4239|M.ulcerans_Agy99 --------------TLDRLLLPGMVLGAVSFAYVVRLTRSAVAANAHADY
MMAR_5153|M.marinum_M --------------TLDRLLLPGMVLGAVSFAYVVRLTRSAVAANAHADY
Mb3689c|M.bovis_AF2122/97 --------------SVGRLLLPGIVLGAMSFAYVVRLTRSAVAANAHADY
Rv3665c|M.tuberculosis_H37Rv --------------SVGRLLLPGIVLGAMSFAYVVRLTRSAVAANAHADY
MAV_0465|M.avium_104 --------------TFTRLLLPGIVLGSVSFAYVVRLTRSTVAVNAHADY
MAB_0427|M.abscessus_ATCC_1997 --------------GWYSFLLPGLVLASLSMAYVARLTRTSMLETMDAEF
MLBr_01124|M.leprae_Br4923 SPGVYGGAWAHVIDRLRHLILPTLTLALVGAAGYSRYQRNAMLDVLSQDF
.:** :.:. . * * * :: .
Mflv_2760|M.gilvum_PYR-GCK VRTARSKGLTPRVVTFRHTVRNALVPILTITGIQLATLLGGVIVVEVVFA
Mvan_3774|M.vanbaalenii_PYR-1 VRTARSKGLSPRIVTFRHTVRNALVPILTITGIQLATLLGGVIVVEVVFA
TH_2645|M.thermoresistible__bu VRTARSKGLSPWVLTVRHTVRNALIPVLTITGIQLATILGGVIVVEVVFA
MSMEG_6866|M.smegmatis_MC2_155 IRTATAKGLSRRQVVVGHGLRNASLPVVTVVGLEFGSLLGGAILTEQVFS
MUL_4239|M.ulcerans_Agy99 VRTATAKGLSRPRVVTVHILRNSLIPVVTFLGADLGALMGGAVVTEGIFN
MMAR_5153|M.marinum_M VRTATAKGLSRPRVVTVHILRNSLIPVVTFLGADLGALMGGAVVTEGIFN
Mb3689c|M.bovis_AF2122/97 VRTATAKGLSRPRVVTVHILRNSLIPVVTFLGADLGALMGGAIVTEGIFN
Rv3665c|M.tuberculosis_H37Rv VRTATAKGLSRPRVVTVHILRNSLIPVVTFLGADLGALMGGAIVTEGIFN
MAV_0465|M.avium_104 VRTATAKGLSRPRVVTVHILRNSLIPVVTFLGADLGALMGGAIVTEGIFN
MAB_0427|M.abscessus_ATCC_1997 VRTARAKGISESRILLRHTLRNSLIPVVTFIGADVGALLAGAVVTESVFN
MLBr_01124|M.leprae_Br4923 IRAARAKGLTRRRALLKHGLRTALIPMATLFAYGVAGLVTGALFVEKIFG
:*:* :**:: * :*.: :*: *. . .. :: *.:..* :*
Mflv_2760|M.gilvum_PYR-GCK WPGLGRLVFNAVAARDYPLIQGAVLLIAALFLLINLLVDVLYAVVDPRIR
Mvan_3774|M.vanbaalenii_PYR-1 WPGLGRLVFNAVAARDYPLIQGAVLLIAALFLVINLLVDVLYAVVDPRIR
TH_2645|M.thermoresistible__bu WPGLGRLVYNAVAARDYPVIQGAVLLIAALFLLINLLVDLLYAIVDPRIR
MSMEG_6866|M.smegmatis_MC2_155 WPGIGRLTVEAISNRDFALVQGAVLFFALVFVVVNLLVDLSYTLLDPRVR
MUL_4239|M.ulcerans_Agy99 IHGVGGVLYQAVTRQEAPTVVSIVTVLVMVYLLTNLLVDLLYAALDPRIR
MMAR_5153|M.marinum_M IHGVGGVLYQAVTRQEAPTVVSIVTVLVMVYLLTNLLVDLLYAALDPRIR
Mb3689c|M.bovis_AF2122/97 IHGVGGVLYQAVTRQETPTVVSIVTVLVLIYLITNLLVDLLYAALDPRIR
Rv3665c|M.tuberculosis_H37Rv IHGVGGVLYQAVTRQETPTVVSIVTVLVLIYLITNLLVDLLYAALDPRIR
MAV_0465|M.avium_104 IHGVGGVLYQAVTRQEAPTVVSIVTVLVLIYLVTNLVVDLLYAVLDPRIR
MAB_0427|M.abscessus_ATCC_1997 IPGLGRATFDAVRNQEGAVVVSILTLIVFFYIFFNLVVDILYALLDPRIR
MLBr_01124|M.leprae_Br4923 WHGMGEWMVQGVATQDTNIIAAITIFFGTVILLAGLLSDVIYAALDPRVR
*:* :.: :: : . .: . :. .*: *: *: :***:*
Mflv_2760|M.gilvum_PYR-GCK LG-
Mvan_3774|M.vanbaalenii_PYR-1 LG-
TH_2645|M.thermoresistible__bu LA-
MSMEG_6866|M.smegmatis_MC2_155 LGR
MUL_4239|M.ulcerans_Agy99 YG-
MMAR_5153|M.marinum_M YG-
Mb3689c|M.bovis_AF2122/97 YG-
Rv3665c|M.tuberculosis_H37Rv YG-
MAV_0465|M.avium_104 YG-
MAB_0427|M.abscessus_ATCC_1997 YE-
MLBr_01124|M.leprae_Br4923 VS-