For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
LRDRRSQAAYIGDDYGALTAWLEEFVLSGGKRLRPIFAYRGWPAVTTEDPDPDLLLLFSALELLHAWALI HDDVIDASSTRRGRPMAHIHFAALHRDRNWLGPAQQFGISAAILIGDVAQAWADDIISRVSQSSLSPDAQ RRVQRVWSDIRTEVLGGQYLDIVAEASAADSITSAMTVATFKTACYTVSRPLQLGAAAAADRPDVQEAFH QFGTDLGVAFQLRDDVLGVFGDPAMTGKPSGDDLRSGKRTVLIAEAAALADRSDPKAANLLRSAVGSELT DSQVGELREVIVRVGALAAAENRNAGLTRRALATLESIPINASAKAGLSALARTATDRSA
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. ulcerans Agy99 | MUL_3516 | idsA2 | - | 100% (340) | geranylgeranyl pyrophosphate synthetase IdsA2 |
| M. ulcerans Agy99 | MUL_0373 | crtE | 3e-44 | 40.77% (260) | geranylgeranyl pyrophosphate synthase CrtE |
| M. ulcerans Agy99 | MUL_0664 | grcC1 | 3e-21 | 27.95% (322) | polyprenyl diphosphate synthetase, GrcC1 |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | Mb2195 | idsA2 | 1e-140 | 73.82% (340) | geranylgeranyl pyrophosphate synthetase |
| M. gilvum PYR-GCK | Mflv_2975 | - | 1e-121 | 65.59% (340) | polyprenyl synthetase |
| M. tuberculosis H37Rv | Rv2173 | idsA2 | 1e-140 | 73.82% (340) | geranylgeranyl pyrophosphate synthetase |
| M. leprae Br4923 | MLBr_02277 | - | 6e-23 | 27.19% (331) | polyprenyl diphosphate synthase component |
| M. abscessus ATCC 19977 | MAB_1992c | - | 5e-94 | 56.92% (318) | polyprenyl synthetase |
| M. marinum M | MMAR_3208 | idsA2 | 0.0 | 98.53% (340) | geranylgeranyl pyrophosphate synthetase IdsA2 |
| M. avium 104 | MAV_2321 | - | 1e-137 | 73.24% (340) | polyprenyl synthetase |
| M. smegmatis MC2 155 | MSMEG_4240 | - | 1e-117 | 66.28% (344) | polyprenyl synthetase |
| M. thermoresistible (build 8) | TH_0708 | idsA2 | 1e-122 | 66.67% (342) | PROBABLE GERANYLGERANYL PYROPHOSPHATE SYNTHETASE IDSA2 |
| M. vanbaalenii PYR-1 | Mvan_3536 | - | 1e-121 | 66.47% (340) | polyprenyl synthetase |
CLUSTAL 2.0.9 multiple sequence alignment
MUL_3516|M.ulcerans_Agy99 ----------------------MRDRRSQAAYIGDDYGALTAWLEEFVLS
MMAR_3208|M.marinum_M ----------------------MRDRRSQAAYIGDDYGALTAWLEEFVLS
Mb2195|M.bovis_AF2122/97 ----------MAGAITDQLRRYLHGRRRAAAHMGSDYDGLIADLEDFVLG
Rv2173|M.tuberculosis_H37Rv ----------MAGAITDQLRRYLHGRRRAAAHMGSDYDGLIADLEDFVLG
MAV_2321|M.avium_104 ----------MTGAITEQLRRYLHDRRAETAYIGDDYSGLIAALEEFVLN
Mflv_2975|M.gilvum_PYR-GCK MDAAAPSAVELVNAVNEELREYLRGRRRDAAYIGTDYAVLTEALEEFVLR
Mvan_3536|M.vanbaalenii_PYR-1 MDASAPSAVELAAAVTEQLRDYLRARRRDAAYIGAGYAVLTEAVEEFVLR
TH_0708|M.thermoresistible__bu --------VELANAVTDELRDYLRQRREDSAYIGSDYTHMTAALEEFVLR
MSMEG_4240|M.smegmatis_MC2_155 MDTAAPSAVELAGAVTEQLREYLRERRSDCAYIGPVYAELTAGVEEFVLR
MAB_1992c|M.abscessus_ATCC_199 -----------------------------------------------MLR
MLBr_02277|M.leprae_Br4923 -MVVAGINFGDAAFAATVQDRVVRIEQLMDAELRDTDEVMTESVLHLFAA
.
MUL_3516|M.ulcerans_Agy99 GGKRLRPIFAYRGWPAVTT-EDP--DPDLLLLFSALELLHAWALIHDDVI
MMAR_3208|M.marinum_M GGKRLRPIFAYRGWQAVTT-EDP--DPDLLLLFSALELLHAWALIHDDVI
Mb2195|M.bovis_AF2122/97 GGKRLRPLFAYWGWHAVAS-REP--DPDVLLLFSALELLHAWALVHDDLI
Rv2173|M.tuberculosis_H37Rv GGKRLRPLFAYWGWHAVAS-REP--DPDVLLLFSALELLHAWALVHDDLI
MAV_2321|M.avium_104 GGKRLRPAFAYWGWRAVAT-EAP--DDQALLLFSALELLHACALVHDDVI
Mflv_2975|M.gilvum_PYR-GCK GGKRLRPAFAYWGFRAVAG-TEP--EPHIMRLFSALELLHACALVHDDLI
Mvan_3536|M.vanbaalenii_PYR-1 GGKRLRPAFAYWGWRAVAG-TEP--GPEALRLFSALELLHACALVHDDVI
TH_0708|M.thermoresistible__bu GGKRIRPAFAYWGWRAVAD-EPAPVPPEIMRLFAALELLHACALVHDDVI
MSMEG_4240|M.smegmatis_MC2_155 GGKRVRPAFAYWGWRSVIEPADAVAGPDVLRLFSALELLQACALIHDDVI
MAB_1992c|M.abscessus_ATCC_199 GGKRLRPAFAYWGWRAITDDPDP-WNPEVLRVCAALELLHTCALIHDDVI
MLBr_02277|M.leprae_Br4923 GGKRFRPLFTVLSAQIGPRPDAP----EVIIAGAVIELVHLASLYHDDVM
****.** *: . . . : :.:**:: :* ***::
MUL_3516|M.ulcerans_Agy99 DASSTRRGRPMAHIHFAALHRDRNWLGPAQQFGISAAILIGDVAQAWADD
MMAR_3208|M.marinum_M DASSTRRGRPTAHMHFAALHRDRNWLGPAQQFGISAAILIGDVAQAWADD
Mb2195|M.bovis_AF2122/97 DRSATRRGRPTAQLRYAALHRDRDWRGSPDQFGMSAAILLGDLAQVWADD
Rv2173|M.tuberculosis_H37Rv DRSATRRGRPTAQLRYAALHRDRDWRGSPDQFGMSAAILLGDLAQVWADD
MAV_2321|M.avium_104 DDSATRRGRPTTHVRFASLHRDRQWQGSPERFGMSAAILLGDLALAWADD
Mflv_2975|M.gilvum_PYR-GCK DASATRRGLPTVHRIFSERHRSNNWLGSSDQFGLSAAILLGDLSLVWADD
Mvan_3536|M.vanbaalenii_PYR-1 DASATRRGLPTVHRIFAERHRSNNWLGSSEQFGLSAAILLGDVALVWADD
TH_0708|M.thermoresistible__bu DASATRRGLPTVHRLFADTHRSRGWRGSAEQFGLSAAILLGDLALVWADD
MSMEG_4240|M.smegmatis_MC2_155 DDSATRRGLPTVHRLFTEQHHERGWLGSERQFGLSAAILAGDLALSWADD
MAB_1992c|M.abscessus_ATCC_199 DSSATRRGEPTIHVEFAALHRENGWSGSPEQFGISAAILLGDLALTWADD
MLBr_02277|M.leprae_Br4923 DEAEVRRGAPSANLRWSN----------------SVAILAGDYLFATASR
* : .*** * : :: *.*** ** *.
MUL_3516|M.ulcerans_Agy99 IISRVSQSSLSPDAQRRVQRVWSDIRTEVLGGQYLDIVAEASAADSITSA
MMAR_3208|M.marinum_M IISRVSQSSLSPDAQRRVQRVWSDIRTEVLGGQYLDIVAEASAADSITSA
Mb2195|M.bovis_AF2122/97 IVSKVCQSALAPDAQRRVHRVWADIRNEVLGGQYLDIVAEASAAESIESA
Rv2173|M.tuberculosis_H37Rv IVSKVCQSALAPDAQRRVHRVWADIRNEVLGGQYLDIVAEASAAESIESA
MAV_2321|M.avium_104 IVLGV---DLTPQAARRVRRVWANIRTEVLGGQYLDIVAEASAAASIASA
Mflv_2975|M.gilvum_PYR-GCK IIAEA---PIDDAAHRRVQRVWAAIRTEVLGGQYLDIVNEASGSETVASA
Mvan_3536|M.vanbaalenii_PYR-1 IVASA---EIGVEAHRRVQRVWAAIRTEVLGGQYLDIVNEATGAETVASA
TH_0708|M.thermoresistible__bu AVGSA---GLSVDAHRRVRRVWADIRTEVLGGQYLDIVNESSGADSVASA
MSMEG_4240|M.smegmatis_MC2_155 IVAGA---DLPVDAHRRVQTVWRHIRTEVLGGQYLDIVTESSGDESVASA
MAB_1992c|M.abscessus_ATCC_199 MVVGA---QLSPEAHVRARGVWSILRSEVLGGQYLDILSESSGDESVETA
MLBr_02277|M.leprae_Br4923 LVSQLG---------LDAVRIIADTFAQLVTGQMRETRGVPEGADSIEQY
: . : ::: ** : . . ::
MUL_3516|M.ulcerans_Agy99 MTVATFKTACYTVSRPLQLGAAAAADRPDVQEAFHQFGTDLGVAFQLRDD
MMAR_3208|M.marinum_M MTVATFKTACYTVSRPLQLGAAAAADRPDVQEAFHQFGTDLGVAFQLRDD
Mb2195|M.bovis_AF2122/97 MNVATLKTACYTVSRPLQLGTAAAADRSDVAAIFEHFGADLGVAFQLRDD
Rv2173|M.tuberculosis_H37Rv MNVATLKTACYTVSRPLQLGTAAAADRSDVAAIFEHFGADLGVAFQLRDD
MAV_2321|M.avium_104 MNVDTFKTACYTVSRPLQLGAAAAADRPDVHDLFSQFGTDLGVAFQLRDD
Mflv_2975|M.gilvum_PYR-GCK LTVNIYKTASYTISRPLQLGAAAAGDRPEILEAFHELGTSLGVAFQLRDD
Mvan_3536|M.vanbaalenii_PYR-1 LTVNIYKTASYTISRPLQLGAAAAADCPEVLSAFHELGTSLGVAFQLRDD
TH_0708|M.thermoresistible__bu MTVNTYKTASYTVTRPLQLGAAAAADRPDVLATFHEVGNDLGVAFQLRDD
MSMEG_4240|M.smegmatis_MC2_155 LNVNTFKTASYTVARPLQLGAAAAADRPDVQELFHRIGNDLGVAFQLRDD
MAB_1992c|M.abscessus_ATCC_199 LRVIRFKTAGYTVQRPLQLGVAIAGENAEISRLLGDVGLDIGIAFQLRDD
MLBr_02277|M.leprae_Br4923 LKVVYEKTGCLIGS-AGRLGGLFAGAHAEQVERLSRLGSIVGTAFQISDD
: * **. . :** *. .: : .* :* ***: **
MUL_3516|M.ulcerans_Agy99 VLGVFGDPAMTGKPSGDDLRSGKRTVLIAEAAALADRSDPKAANLLRSAV
MMAR_3208|M.marinum_M VLGVFGDPAVTGKPSGDDLRSGKRTVLIAEAAALADRSDPKAANLLRSAV
Mb2195|M.bovis_AF2122/97 VLGVFGDPAVTGKPSGDDLKSGKRTVLVAEAVELADRSDPLAAKLLRTSI
Rv2173|M.tuberculosis_H37Rv VLGVFGDPAVTGKPSGDDLKSGKRTVLVAEAVELADRSDPLAAKLLRTSI
MAV_2321|M.avium_104 VLGVFGDPAVTGKPSGDDLRSGKRTVLLAEAVELAEKSDPLAAKLLRDSI
Mflv_2975|M.gilvum_PYR-GCK VLGVYGDPAVTGKPSGDDLRSGKRTVLLAEAVELADRHDPPAAQLLRTSI
Mvan_3536|M.vanbaalenii_PYR-1 VLGVFGDPAVTGKPSGDDLRSGKRTVLLAEAVELAEKHDQIAAKLLRTSI
TH_0708|M.thermoresistible__bu VLGVFGDPAVTGKPSGDDLRSGKRTVLLAEAVELAEQRDPAAAELLRTAI
MSMEG_4240|M.smegmatis_MC2_155 VLGVFGDPAVTGKPSGDDLRSGKRTVLLAEALELADASDPAAAALLRRSV
MAB_1992c|M.abscessus_ATCC_199 VLGVFGDPKVTGKPAGDDLRSGKRTVLLAEALRLARQRDSAAEDLLHSWI
MLBr_02277|M.leprae_Br4923 IIDIDSDYTKSGKLPGTDVREGVRTLPILYALRETG---PDSERLRALLA
::.: .* :** .* *::.* **: : * : : *
MUL_3516|M.ulcerans_Agy99 GSELTDSQVGELREVIVRVGALAAAENRNAGLTRRALATLESIPINASAK
MMAR_3208|M.marinum_M GSELTDSQVGELREVIVRVGALAAAENRIAGLTRRALATLESIPINASAK
Mb2195|M.bovis_AF2122/97 GTRLTDAQVRELRTVIEAVGARAAAESRIAALTQRALATLASAPINATAK
Rv2173|M.tuberculosis_H37Rv GTRLTDAQVRELRTVIEAVGARAAAESRIAALTQRALATLASAPINATAK
MAV_2321|M.avium_104 GAQLSDAEVDRLRDVIESVGALAAAEQRIATLTQRALATLAAAPINTAAK
Mflv_2975|M.gilvum_PYR-GCK GTDLSDAQVKELCLVIEAVGALAAVESRIDTLTRRALDIMNSAPIDVRAK
Mvan_3536|M.vanbaalenii_PYR-1 GTDLTDAQVKEVCLVIESVGALAAVESRIDTLTRRALDILNSAPIDVQAK
TH_0708|M.thermoresistible__bu GTELSDEQVTEVCGAIEKVGALRAVEDRIETLTTRALRRLDAAPIHEAAK
MSMEG_4240|M.smegmatis_MC2_155 GTELSDTQVRELCDAIESVGALAAVEQRIETLTRDALDVLAAANVHPQAK
MAB_1992c|M.abscessus_ATCC_199 GTPLTDQQVAEMCSLIVDLGALGAVESRIEEHTHRALDQLAGADIADDAR
MLBr_02277|M.leprae_Br4923 GPVDNDAEVVEALALLRASPGMARARQVLAHYADQASGELAQLP-DGPSR
*. .* :* . : . ... : * : ::
MUL_3516|M.ulcerans_Agy99 AGLSALARTATDRSA
MMAR_3208|M.marinum_M AGLSALARTATDRSA
Mb2195|M.bovis_AF2122/97 AGLSELAMMAANRSA
Rv2173|M.tuberculosis_H37Rv AGLSELAMMAANRSA
MAV_2321|M.avium_104 AGLSELAKLATNRSA
Mflv_2975|M.gilvum_PYR-GCK AGLAELARLAANRSA
Mvan_3536|M.vanbaalenii_PYR-1 AGLAELARMAANRSA
TH_0708|M.thermoresistible__bu VGLSELARSAANRSA
MSMEG_4240|M.smegmatis_MC2_155 AGLSELARSAANRTA
MAB_1992c|M.abscessus_ATCC_199 AALSDLVRLVSNRSA
MLBr_02277|M.leprae_Br4923 DALATLVDYTTNRHG
.*: *. .::* .