For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
VLQRSHDRPASLDNPRSPRRRASMPNFEKYAWLFMRFSGVVLVFLALGHLFIGLMWENGVYRIDFNYVAQ RWSSPFWQTWDLLLLWLAQLHGGNGLRVIIDDYSRKDSTRFWLNSLLVVSIVFTLALGSYVLLTFDANIS
Operon Prediction Model: Genebank
Paralogs
species | id | gene | e-value | identity (len) | annotation |
M. ulcerans Agy99 | MUL_1368 | sdhD | - | 100% (140) | succinate dehydrogenase (hydrophobic membrane anchor subunit) SdhD |
Closest Orthologs (e-value cutoff: 1e-4)
species | id | gene | e-value | identity (len) | annotation |
M. bovis AF2122 / 97 | Mb3346 | sdhD | 2e-72 | 86.43% (140) | succinate dehydrogenase hydrophobic membrane anchor subunit |
M. gilvum PYR-GCK | Mflv_4845 | - | 2e-69 | 83.57% (140) | putative succinate dehydrogenase |
M. tuberculosis H37Rv | Rv3317 | sdhD | 6e-72 | 85.71% (140) | succinate dehydrogenase hydrophobic membrane anchor subunit |
M. leprae Br4923 | MLBr_00698 | sdhD | 1e-67 | 82.86% (140) | putative succinate dehydrogenase hydrophobic membrane anchor |
M. abscessus ATCC 19977 | MAB_3674 | - | 8e-67 | 78.42% (139) | succinate dehydrogenase, hydrophobic membrane anchor protein |
M. marinum M | MMAR_1202 | sdhD | 6e-80 | 99.29% (140) | succinate dehydrogenase (hydrophobic membrane anchor |
M. avium 104 | MAV_4298 | - | 2e-67 | 82.86% (140) | succinate dehydrogenase hydrophobic membrane anchor protein |
M. smegmatis MC2 155 | MSMEG_1671 | - | 2e-61 | 72.14% (140) | succinate dehydrogenase hydrophobic membrane anchor protein |
M. thermoresistible (build 8) | TH_2181 | sdhD | 3e-71 | 85.71% (140) | PROBABLE SUCCINATE DEHYDROGENASE (HYDROPHOBIC MEMBRANE |
M. vanbaalenii PYR-1 | Mvan_1588 | - | 2e-70 | 85.00% (140) | putative succinate dehydrogenase |
CLUSTAL 2.0.9 multiple sequence alignment MUL_1368|M.ulcerans_Agy99 ---------------------------MLQRSHDRPASLDNPRSPRRRAS MMAR_1202|M.marinum_M MSAPDH----QLGR--------GEHAPVLQRSHDRPASLDNPRSPRRRAG Mb3346|M.bovis_AF2122/97 MS-----------------------APVRQRSHDRPASLDNPRSPRRRAG Rv3317|M.tuberculosis_H37Rv MS-----------------------APVRQRSHDRPASLDNPRSPRRRAG MLBr_00698|M.leprae_Br4923 MSNSDL----QLRPQVQPTCQKGQLAPVRQRSYDRPASLDNPRSPRRRAG MAV_4298|M.avium_104 MSTPDL----QLGP--------GQIAPVKQRFYDRPASLDNPRSPRRRAG Mflv_4845|M.gilvum_PYR-GCK MTQASRPASGRAENAYDHISDRGGPAPVMQRSFDRPAGLDNPRAPRRSGG Mvan_1588|M.vanbaalenii_PYR-1 MSSGKK----MAENPYDHISDRGGPAPVMQRSYDRPAGLDNPRSPRRAGG TH_2181|M.thermoresistible__bu ---------------------------VLETSHDRPAALDNPRAPRRRGG MSMEG_1671|M.smegmatis_MC2_155 MS---------APGAGE--SRLGRPAPVMEREHDRPAALDHPRAPRKPRG MAB_3674|M.abscessus_ATCC_1997 MTTP-------QTGSHTSVRASGRPAPVLERNYDRPAALDNPRAPRRGSG : : .****.**:**:**: . MUL_1368|M.ulcerans_Agy99 MPNFEKYAWLFMRFSGVVLVFLALGHLFIGLMWENGVYRIDFNYVAQRWS MMAR_1202|M.marinum_M MPNFEKYAWLFMRFSGVVLVFLALGHLFIGLMWENGVYRIDFNYVAQRWS Mb3346|M.bovis_AF2122/97 MPNFEKFAWLFMRFSGVVLVFLAIGHLFIMLMWDNGVYRLDFNFVAQRWA Rv3317|M.tuberculosis_H37Rv MPNFEKFAWLFMRFSGVVLVFLAIGHVFIMLMWDNGVYRLDFNFVAQRWA MLBr_00698|M.leprae_Br4923 IPNFEKFAWLFMRFSGVALVVLAFGHLFIMLMWDNGVYRIDFNFVAQRWS MAV_4298|M.avium_104 IPNFEKFAWLFMRFSGVALFVLAIGHLFIMLMWDDGVYRIDFNYVAQRWA Mflv_4845|M.gilvum_PYR-GCK MPNFEKYTWLFMRFSGIVLVFLALGHLFIMLMWENGVYRIDFNYVAQRWS Mvan_1588|M.vanbaalenii_PYR-1 MPNFEKYAWLFMRFSGIVLVFLALGHLFIMLMWENGVYRIDFNYVAERWS TH_2181|M.thermoresistible__bu MPNFEKYAWLFMRFSGIVLVFLALGHLFIMLMWENGVYRIDFNYVAERWQ MSMEG_1671|M.smegmatis_MC2_155 IPYFEKYAWLFMRFSGIALVFLALGHLFIMLMWQDGVYRIDFNYVAERWA MAB_3674|M.abscessus_ATCC_1997 MPNFEKYAWIFMRLSGVVLIFLALGHLFIMLMWDNGVYRLDFNFVAQRWA :* ***::*:***:**:.*..**:**:** ***::****:***:**:** MUL_1368|M.ulcerans_Agy99 SPFWQTWDLLLLWLAQLHGGNGLRVIIDDYSRKDSTRFWLNSLLVVSIVF MMAR_1202|M.marinum_M SPFWQTWDLLLLWLAQLHGGNGLRVIIDDYSRKDSTRFWLNSLLVVSIVF Mb3346|M.bovis_AF2122/97 SPFWQTWDLLLLWLAQLHGGNGLRTIIDDYSRKDTTRFWLNSLLVLSMLF Rv3317|M.tuberculosis_H37Rv SPFWQTWDLLLLWLAQLHGGNGLRTIIDDYSRKDTTRFWLNSLLVLSMLF MLBr_00698|M.leprae_Br4923 SPFWRFWDLALLWLAQVHGGNGLRNIIDDYSRKDHTRFWLNSLLLLSMGF MAV_4298|M.avium_104 SPFWQFWDLALLWLAQLHGGNGLRTIIDDYSRKDSTRFWLNSLLLLSMGF Mflv_4845|M.gilvum_PYR-GCK SPFWQTWDLLLLWLAQLHGGNGMRTIIADYTRKDSTKFWLNTLLALSMAF Mvan_1588|M.vanbaalenii_PYR-1 SPFWQTWDLLLLWLAQLHGGNGMRTIIADYSRKDSTKFWLNTLLALSMAF TH_2181|M.thermoresistible__bu SPFWQIWDLLLLWLAQLHGGNGMRTIIADYARKDSTRFWLNALLALSIVF MSMEG_1671|M.smegmatis_MC2_155 SPFWQIWDMALLWLAMIHGANGMRTIIGDYARKNVTKFWLNSLLLLATGF MAB_3674|M.abscessus_ATCC_1997 SPFWQTWDLLMLWLAQLHGGNGMRTIIADYTRKDSTRFWLNCLLALSIIF ****: **: :**** :**.**:* ** **:**: *:**** ** :: * MUL_1368|M.ulcerans_Agy99 TLALGSYVLLTFDANIS- MMAR_1202|M.marinum_M TLALGSYVLLTFDANIS- Mb3346|M.bovis_AF2122/97 TLMLGTYVIVTFDPNIS- Rv3317|M.tuberculosis_H37Rv TLMLGTYVIVTFDPNIS- MLBr_00698|M.leprae_Br4923 TLVLGSYVLLSFDPNIS- MAV_4298|M.avium_104 TLVLGTYVLLTFDPNISG Mflv_4845|M.gilvum_PYR-GCK TLVLGTYVLLTFDASIS- Mvan_1588|M.vanbaalenii_PYR-1 TLVLGTYVLLTFDATIS- TH_2181|M.thermoresistible__bu TLVLGTYVLLTFDANIS- MSMEG_1671|M.smegmatis_MC2_155 TLVLGSYVLVTFDANIS- MAB_3674|M.abscessus_ATCC_1997 TVVLGTYVLLTFNPNIG- *: **:**:::*:..*.