For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
VGFLDDVGRIADKIGLPNPADVVNGAVNGVNDARAFVGDVVEGDFHGALTNGRKLIGDAQDVIGGLGSLG VFPNVATGPIMDAVLKLADSRILAAAQMAIAAMKATTGNGNPEDGGGFRGSAEKLANAVNTLIDAEPHFD RWDGTASQVYNAVNASHRRLTSDTQAADSNIAAVLKIEAEQIIRTRGRLDEISQFLYDYGLATAVANYSG PGKAAQLIADMTVAGLAVQSANVTMAILTKNVIENAARVKKHAGTYTDVQDDTSGEVNACDPFAIPKDDL PRGDDSTKLPTPNGNGTVDPPSRTLPETPFTMPEPEEPIQYGPPATPQPAPLPPVPAAPSSENLDTPQAV PAR
Operon Prediction Model: Genebank
Paralogs
species | id | gene | e-value | identity (len) | annotation |
M. smegmatis MC2 155 | MSMEG_6446 | - | - | 100% (353) | hypothetical protein MSMEG_6446 |
M. smegmatis MC2 155 | MSMEG_0055 | - | 3e-23 | 31.56% (282) | hypothetical protein MSMEG_0055 |
M. smegmatis MC2 155 | MSMEG_0723 | - | 5e-12 | 27.59% (174) | hypothetical protein MSMEG_0723 |
Closest Orthologs (e-value cutoff: 1e-4)
species | id | gene | e-value | identity (len) | annotation |
M. bovis AF2122 / 97 | - | - | - | - | - |
M. gilvum PYR-GCK | Mflv_0157 | - | 3e-10 | 26.82% (220) | hypothetical protein Mflv_0157 |
M. tuberculosis H37Rv | - | - | - | - | - |
M. leprae Br4923 | MLBr_00405 | - | 8e-05 | 26.49% (151) | hypothetical protein MLBr_00405 |
M. abscessus ATCC 19977 | - | - | - | - | - |
M. marinum M | MMAR_1325 | - | 1e-05 | 23.77% (244) | hypothetical protein MMAR_1325 |
M. avium 104 | - | - | - | - | - |
M. thermoresistible (build 8) | TH_2666 | - | 6e-13 | 30.68% (176) | PUTATIVE putative hypothetical protein MSMEG_0078 |
M. ulcerans Agy99 | MUL_2554 | - | 2e-05 | 23.77% (244) | hypothetical protein MUL_2554 |
M. vanbaalenii PYR-1 | Mvan_5688 | - | 2e-49 | 35.47% (358) | hypothetical protein Mvan_5688 |
CLUSTAL 2.0.9 multiple sequence alignment MMAR_1325|M.marinum_M --------------MPAGLIAAAVRTIVNLGSFGQQFVGVNDPKFTNPEY MUL_2554|M.ulcerans_Agy99 --------------MPAGLIAAAVRTIVNLGSFGQQFVGVNDPKFTNPEY MSMEG_6446|M.smegmatis_MC2_155 MGFLDDVGRIADKIGLPNPADVVNGAVNGVNDARAFVGDVVEGDFHGALT Mvan_5688|M.vanbaalenii_PYR-1 MSLFDDVSGVVG-----NVVDVVEGSVGTVESGVDFVGSVLDGDVTGATR Mflv_0157|M.gilvum_PYR-GCK ------------------------MALGKLWVDANYFYGVADHANMMSSD TH_2666|M.thermoresistible__bu --------------------------MLDAYSTLNWGKSVVEHPMSAKDH MLBr_00405|M.leprae_Br4923 -----------------MSGAFIIDPTLKAIEAWHALLGIGVPNDGGVLY .: MMAR_1325|M.marinum_M LAASATGMASDGLTAVFGQTWVPQALAKRVGHSQLTSLASSKAAQGASAI MUL_2554|M.ulcerans_Agy99 LAASATGMASDGLTAVFGQTWVPQALAKRVGHSQLTSLASSKAAQGASAI MSMEG_6446|M.smegmatis_MC2_155 NGRKLIGDAQDVIGGLGSLGVFPN-VATGPIMDAVLKLADSRILAAA--- Mvan_5688|M.vanbaalenii_PYR-1 DAYEFVDNARDVLGGVRDLGVSIGRVPSRFVDNPILELANSPPIELA--- Mflv_0157|M.gilvum_PYR-GCK PALGSAAIATDAAILMQSLAAVGG---STMGATGLATSVATPIINAG--- TH_2666|M.thermoresistible__bu TGWGIAGTGADFVTLMQGMTEAG----SGLDQGRLAKAAATPIIRAA--- MLBr_00405|M.leprae_Br4923 SSLSFFEKALEHLAAAFPGDGWLGSAADKYAGQNRKRVDIFQELAELD-- . . : MMAR_1325|M.marinum_M LWTINIVEVLETLMGFGPPAEGDELLVGSTQFAKAQAQLGSALPDNS-WQ MUL_2554|M.ulcerans_Agy99 LWTINIVEVLETLMGFGPPAEGDELLVGSTQFAKAQAQLGSALPDNS-WQ MSMEG_6446|M.smegmatis_MC2_155 ---QMAIAAMKATTGNGNPEDGGGFRGSAEKLANAVNTLIDAEPHFDRWD Mvan_5688|M.vanbaalenii_PYR-1 ---QRVIAGMRLTTGSGDPVDGEEFKNAAKLMQEALELLIDAAPHGDHWS Mflv_0157|M.gilvum_PYR-GCK ---LMTLTAASNTLGFGRPEDGERFTDGARQFSEANDELQQAVPPPD-WQ TH_2666|M.thermoresistible__bu ---LLAMMVMSNTCGVGTPEKGDRFEEGAQAFEAAGEALGATKSPES-WQ MLBr_00405|M.leprae_Br4923 ---KELIELIHNQANSVQTTRG--ILDGAKKALLFVRPVAIDLNYIP--- : . . * : .: : MMAR_1325|M.marinum_M GSASYAYASQNTALQNRGQALAELDVKFAALVKDQAEWVTHGRLGIAILK MUL_2554|M.ulcerans_Agy99 GSASYAYASQNTALQNRGQALAELDVKFAALVKDQAEWATHGRLGIAILK MSMEG_6446|M.smegmatis_MC2_155 GTASQVYNAVNASHRRLTSDTQAADSNIAAVLKIEAEQIIRTRGRLDEIS Mvan_5688|M.vanbaalenii_PYR-1 GAASEQYAGANTQNRRATSGVQVADWNIADFLEAEAEQVMRTRKTLDDIN Mflv_0157|M.gilvum_PYR-GCK GDASDAYGLRNTEQQQRAGSMATFDGQIQEVLAEEAGQVQDTRDFVSTRQ TH_2666|M.thermoresistible__bu GKASNTYTDRNDEQRARAERMAAIDRTVKEILDAEAHQVDVARKMLDRCQ MLBr_00405|M.leprae_Br4923 --LVGSVMSASIQAQACAAAMAAVSGGLAYLLVQTAIHTAKFVALLARLA . : . . .: * : MMAR_1325|M.marinum_M NLLLAAFAVEMALMFAVPAGPAMARSFGFT-VSGLGIAIAMGLLSTVLTY MUL_2554|M.ulcerans_Agy99 NLLLATFAVEMALMFAVPAGPAMARSFGFT-VSGLGIAIAMGLLSTVLTY MSMEG_6446|M.smegmatis_MC2_155 QFLYDYGLATAVANYSG-PGKAAQLIADMT-VAGLAVQSANVTMAILTKN Mvan_5688|M.vanbaalenii_PYR-1 EYLFQFALSTAWMNGIP-GGRAAKLVVDAT-AAAGGALSAERALLTLVAD Mflv_0157|M.gilvum_PYR-GCK VMLAAAIPAAITAKLIPPGGAAAAMAIELA-AVAATVPFAMQRVTEMVSH TH_2666|M.thermoresistible__bu TVLSLSIPAAIAAKAIPFKGPAISTAIEVA-AVAGTAPLASLRYNELTRA MLBr_00405|M.leprae_Br4923 HLLASAVADVVSDGVAIIKGIVDHLWHFIAGALTGLKDIVEKIIHWFFGL * * . : . . . MMAR_1325|M.marinum_M SVENSKKADVLTANYQDLTPDPYQGADPSMPVAANMPASAESTISSFAAS MUL_2554|M.ulcerans_Agy99 SVENSKKADVLTANYQDLTPDPYQGADPSMPMAANMPASAESTISSFAAS MSMEG_6446|M.smegmatis_MC2_155 VIENAARVKKHAGTYTDVQDDTS--GEVNA-------------CDPFAIP Mvan_5688|M.vanbaalenii_PYR-1 SVERGGKIRDQFNLYEGAANQERKLDDPTC-------------DGPFVPA Mflv_0157|M.gilvum_PYR-GCK SADNADRIRQIGSHYGVVDESAQMPGGLSG-------------AQSGTPA TH_2666|M.thermoresistible__bu VIRNAARMTQAAGEYSSVASAANPS------------------------- MLBr_00405|M.leprae_Br4923 FSHWWSRLHSFFGGIPGLSGATSGLSQVTGLFG------VPGLAGSSGLL : MMAR_1325|M.marinum_M GTAFTAEAAGSLGRASGAADESAFYSAAADEAVPLEDAPSATSAFTMPTL MUL_2554|M.ulcerans_Agy99 GTAFTAEAAGSLGRASGAADESAFYSAAADEAVPLEDAPSATSAFTMPTL MSMEG_6446|M.smegmatis_MC2_155 --KDDLPRGDDSTKLPTPNGNG--TVDPPSRTLPETPFT-------MPEP Mvan_5688|M.vanbaalenii_PYR-1 --KVDRSDAGRPGRFDNPHYTVPTPVEPPQHGPAATPYIGGGSSVPMPAP Mflv_0157|M.gilvum_PYR-GCK PLRVSESIRGTAGIQQNVAATIDSARSAPDGSAGDVFKTHGVVCTSTAAA TH_2666|M.thermoresistible__bu -------------------------------------------------- MLBr_00405|M.leprae_Br4923 SGESLLSTENLPSLAGVGAGLGLGSLPQLAQLHAASTRQGTRSQAGVSAE MMAR_1325|M.marinum_M AQLMAISGQGAKFSGHVSQHANLANQAMGQVQQVASMAQQGKGTAPAEDT MUL_2554|M.ulcerans_Agy99 AQLMAISGQGAKFSGHVSQHANLANQAMGQVQQVASMAQQGKGTAPAEDT MSMEG_6446|M.smegmatis_MC2_155 EEPIQY-----------------GPPATPQPAPLP-----PVPAAPSSEN Mvan_5688|M.vanbaalenii_PYR-1 QSTSRT-----------------AHPQGSAPRPWAGTNPTAAPASPTPQP Mflv_0157|M.gilvum_PYR-GCK LKSAEL-----------------ARRSAAEKMHLISTDLSAKLGSSATEY TH_2666|M.thermoresistible__bu -------------------------------------------------- MLBr_00405|M.leprae_Br4923 LSTEQFGGQQ-------------EPVSAQGSQGMGGSQGMGGMTPASTKS MMAR_1325|M.marinum_M AQAEATTVEDVEGAGADSAGAAAGRAPIEAAAADTPPAQQPIFAQQVV MUL_2554|M.ulcerans_Agy99 AQTEATTVEDVEGAGADSAGAAAGRAPIEAAAADTPPAQQPIFAQQVV MSMEG_6446|M.smegmatis_MC2_155 LDTP---------------QAVPAR----------------------- Mvan_5688|M.vanbaalenii_PYR-1 TGAPGTRTGSLPGQGAGNRGAAPLRVTARPTSDDKSQEIPT------- Mflv_0157|M.gilvum_PYR-GCK SHTEQQNADAVD-------RQMPPR----------------------- TH_2666|M.thermoresistible__bu ------------------------------------------------ MLBr_00405|M.leprae_Br4923 KKDERKKKKYSEGAAAGTDDAERAPIEVQSGGGKRALAQHVV------