For questions or suggestions e-mail us at: ioerger@cs.tamu.edu

M. smegmatis MC2 155 MSMEG_2634 (-)

ISIPRRAAVALASAAILALSGCGGSGTDNAESGSTEAGSGTQAATLMLNWYPYGEHAPFYYGVQEGIFAK
HGIDLTIDAGQGSTKTVQAVGSDQVDFGWADTPAVLTNIDKGVKVKSTGVFLQTTPSAVQVFADSGIDTP
QDLVGRTIAVSAGDAPTTTFPIYLDKVGVPEDQVTQQSLDAAGKMSAMMSGRVDGLIGFAHDQGPTIANK
SGREVKYLRYSDAGLNFYSNGLIANTETISGKPELVQAMVDATSEAFAAAAADPEAAVQAMAGKDPQMPP
QEVLLHQWQQTIPLLSTPATANQPPGTNAEADWTNTITTLTDAGLLETAKPAAEYWDSSFSPKPSQ*

Operon Prediction Model: Genebank

Paralogs

species	id	gene	e-value	identity (len)	annotation
M. smegmatis MC2 155	MSMEG_2634	-	-	100% (347)	hypothetical protein MSMEG_2634
M. smegmatis MC2 155	MSMEG_0486	-	4e-11	23.33% (270)	putative ABC transporter, periplasmic protein
M. smegmatis MC2 155	MSMEG_1232	-	2e-07	26.15% (218)	ABC transporter substrate-binding protein

Closest Orthologs (e-value cutoff: 1e-4)

species	id	gene	e-value	identity (len)	annotation
M. bovis AF2122 / 97	-	-	-	-	-
M. gilvum PYR-GCK	-	-	-	-	-
M. tuberculosis H37Rv	-	-	-	-	-
M. leprae Br4923	-	-	-	-	-
M. abscessus ATCC 19977	-	-	-	-	-
M. marinum M	-	-	-	-	-
M. avium 104	MAV_0141	-	3e-13	27.72% (285)	sulfonate binding protein
M. thermoresistible (build 8)	-	-	-	-	-
M. ulcerans Agy99	-	-	-	-	-
M. vanbaalenii PYR-1	Mvan_0122	-	2e-06	21.61% (347)	substrate-binding region of ABC-type glycine betaine transport

CLUSTAL 2.0.9 multiple sequence alignment


MAV_0141|M.avium_104                --MRPRHLTALAVVAAVTAVSGCGSS-------------SGTTTTKDLHL
MSMEG_2634|M.smegmatis_MC2_155      MISIPRRAAVALASAAILALSGCGGSGTDNAESGSTEAGSGTQAATLMLN
Mvan_0122|M.vanbaalenii_PYR-1       ---MKLKALLVVLVSAVLALAGCSVDNGGQ--------HGDDSGKPTIRI
                                          :       :*: *::**. .             ..      :  

MAV_0141|M.avium_104                DYAYYNPLSLVIRDQQ-LLEKK-GYHVTWVLSQGSNKANEGLRSKALDFG
MSMEG_2634|M.smegmatis_MC2_155      WYPYGEHAPFYYGVQEGIFAKH-GIDLTIDAGQGSTKTVQAVGSDQVDFG
Mvan_0122|M.vanbaalenii_PYR-1       GYQTFPSGDLIVKNNKWLEEALPDYNIKWTKFDSGADVNTAFVAGELDFG
                                     *       :    :: :     . .:.    :.. ..  .. :  :***

MAV_0141|M.avium_104                STGGSPALLARANGTPIKTVDVYAR---GEWTALVVAKNSPINAVADLKG
MSMEG_2634|M.smegmatis_MC2_155      WADTPAVLTNIDKGVKVKSTGVFLQ---TTPSAVQVFADSGIDTPQDLVG
Mvan_0122|M.vanbaalenii_PYR-1       ALGSSPVARGLSEPLNIPYKVAFVLDVAGDNEALVVRNGAGVDTIAQLKG
                                      . ...     :   :    .:         *: *  .: :::  :* *

MAV_0141|M.avium_104                KKVAVTKGTDPYFFLLQSLATAGLSPADIEIVNLQHADGKTALERGDVDA
MSMEG_2634|M.smegmatis_MC2_155      RTIAVSAGDAPTTTFPIYLDKVGVPEDQVTQQSLDAAGKMSAMMSGRVDG
Mvan_0122|M.vanbaalenii_PYR-1       RRIGTPFASTAHYSLLAALDQNGLSANDVQLIDLQPQAILAAWERGDIDA
                                    : :... .  .   :   *   *:.  ::   .*:     :*   * :*.

MAV_0141|M.avium_104                WSGLDPFMAETIQQQGSR----IIYRNP--DFNSGGVLNAREDFITAHPD
MSMEG_2634|M.smegmatis_MC2_155      LIGFAHDQGPTIANKSGREVKYLRYSDAGLNFYSNGLIAN-TETISGKPE
Mvan_0122|M.vanbaalenii_PYR-1       AYTWLP-TLDELRKTGRDLITSRQLADAG--KPTLDLATVSDEFASAHPE
                                               : : .          :.     : .:     :  :.:*:

MAV_0141|M.avium_104                SVQLVVDTYEEARKWAKTHPAELAALLAS-----------QAKVSQSVAQ
MSMEG_2634|M.smegmatis_MC2_155      LVQAMVDATSEAFAAAAADPEAAVQAMAGKD---PQMPPQEVLLHQWQQT
Mvan_0122|M.vanbaalenii_PYR-1       AVDVWRQQQGRALDLIREDPQAAAEAIAAEIGLTPQDVAGQLKQMVFLTP
                                     *:   :   .*      .*   .  :*.           :         

MAV_0141|M.avium_104                EELGRTALDIDPVPGDWLRAVLTRIEPLAVADGDIKSDDAGRNALNTLIE
MSMEG_2634|M.smegmatis_MC2_155      IPLLSTPATANQPPGTNAEADWTNTITTLTDAGLLETAKPAAEYWDSSFS
Mvan_0122|M.vanbaalenii_PYR-1       QDISSTEWLGTEGNPGNLAVNLESASQFLADQSQIPAAAPLKTFQDAVYT
                                      :  *             .         .  . : :  .     ::   

MAV_0141|M.avium_104                PKYARQAR-
MSMEG_2634|M.smegmatis_MC2_155      PKPSQ----
Mvan_0122|M.vanbaalenii_PYR-1       KGLPGALNE
                                       .