For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
VLVMSMRAASVLIAADEATSRPDRGAKRYTLLLTTDPDLIDAAQRLRHDVFTSEPGYALAGSTDGRDADR FDEYCDHLLVRDERSGELVGCYRMLPPPGAIAAGGLYTATEFDVTALDVLRPSLVEMGRAVVRQDHRNGA VVLLMWAGILAYLDHAGYDHVTGCVSVPVAGAAGEAPGAQIRGVRDFVRRRHAAPYTVHPYRPVVLDGRT LDDIAPPERVTVPALMRGYLRLGAQVCGEPAHDPVFGVGDFPALLDKRQADVRYLRRLRSASAAAHMTDG AA
Operon Prediction Model: Genebank
Paralogs
species | id | gene | e-value | identity (len) | annotation |
M. smegmatis MC2 155 | MSMEG_2355 | - | - | 100% (282) | hypothetical protein MSMEG_2355 |
M. smegmatis MC2 155 | MSMEG_5323 | - | 6e-76 | 58.78% (245) | hypothetical protein MSMEG_5323 |
M. smegmatis MC2 155 | MSMEG_5324 | - | 5e-51 | 47.51% (221) | hypothetical protein MSMEG_5324 |
Closest Orthologs (e-value cutoff: 1e-4)
species | id | gene | e-value | identity (len) | annotation |
M. bovis AF2122 / 97 | Mb3053c | - | 1e-100 | 72.36% (246) | hypothetical protein Mb3053c |
M. gilvum PYR-GCK | Mflv_4257 | - | 1e-113 | 73.93% (280) | hypothetical protein Mflv_4257 |
M. tuberculosis H37Rv | Rv3027c | - | 1e-100 | 72.36% (246) | hypothetical protein Rv3027c |
M. leprae Br4923 | - | - | - | - | - |
M. abscessus ATCC 19977 | MAB_3359c | - | 1e-104 | 68.07% (285) | hypothetical protein MAB_3359c |
M. marinum M | MMAR_1686 | - | 1e-107 | 70.76% (277) | hypothetical protein MMAR_1686 |
M. avium 104 | MAV_3874 | - | 1e-106 | 69.75% (281) | hypothetical protein MAV_3874 |
M. thermoresistible (build 8) | - | - | - | - | - |
M. ulcerans Agy99 | MUL_1924 | - | 1e-107 | 70.40% (277) | hypothetical protein MUL_1924 |
M. vanbaalenii PYR-1 | Mvan_2103 | - | 1e-116 | 75.70% (284) | hypothetical protein Mvan_2103 |
CLUSTAL 2.0.9 multiple sequence alignment MSMEG_2355|M.smegmatis_MC2_155 MLVMSMRAASVLIAADEATSR---PDRGA---KRYTLLLTTDPDLIDAAQ Mvan_2103|M.vanbaalenii_PYR-1 -----MSTASVLIAPDDIDHAQGGSSPSA---PRYTLLLCTDVDSIEAAQ Mb3053c|M.bovis_AF2122/97 --------------------------------------------MVEAAQ Rv3027c|M.tuberculosis_H37Rv --------------------------------------------MVEAAQ MMAR_1686|M.marinum_M -----MSIASVLIPSDKPRGP-ATDAGAG---PRYSLLLSTDSALIEAAQ MUL_1924|M.ulcerans_Agy99 -----MSIASVLIPSDKPRGP-ATDAGAG---PCYSLLLSTDSALIEAAQ MAV_3874|M.avium_104 -----MSIASVLIPSDHPSGP-ATGSSAA---PRYSLLLSADPAMIEAAQ Mflv_4257|M.gilvum_PYR-GCK -----MNASSVLIPSDHS-----VTAGSV---PRYSMLLCTDPASIEAAQ MAB_3359c|M.abscessus_ATCC_199 -----MSTASVLIAADQSMPEVAGKTGEAALGPRYTLLLSNDSADIDAVQ ::*.* MSMEG_2355|M.smegmatis_MC2_155 RLRHDVFTSEPGYALA-------GSTDGRDADRFDEYCDHLLVRDERSGE Mvan_2103|M.vanbaalenii_PYR-1 RLRHDVFSTEPGFTLTD-----DGGSGGLDADRFDEYCDHLLVRDDATGE Mb3053c|M.bovis_AF2122/97 RLRYDVFSTTPGFALP------AAADTRRDGDRFDEYCDHLLVRDDDTGE Rv3027c|M.tuberculosis_H37Rv RLRYDVFSTTPGFALP------AAADTRRDGDRFDEYCDHLLVRDDDTGE MMAR_1686|M.marinum_M RLRYDVFAATPGFALP------AADDR-RDVDRFDEYCDHLLVRDDDTGE MUL_1924|M.ulcerans_Agy99 RLRYDVFAATPGFALP------AADDR-RDVDRFDEYCDHLLVRDDDTGE MAV_3874|M.avium_104 RLRYEVFTSTPGFALP------SADGSGRDVDRFDEFCDHLLVRDDDTGE Mflv_4257|M.gilvum_PYR-GCK RLRYDVFTSEPGYTLNRGTLHRSAAPDGLDADRFDEFCDHLLVRDDDTGQ MAB_3359c|M.abscessus_ATCC_199 RLRYDVFSSEPGFQLAS----TPEAFEGRDADRFDEHCDHLLVREDVSGD ***::**:: **: * * *****.*******:: :*: MSMEG_2355|M.smegmatis_MC2_155 LVGCYRMLPPPGAIAAGGLYTATEFDVTALDVLRPSLVEMGRAVVRQDHR Mvan_2103|M.vanbaalenii_PYR-1 LVGCYRMLPPPGAIAAGGLYTATEFDVTALDPLRPSLVEMGRAVVRDGHR Mb3053c|M.bovis_AF2122/97 LVGCYRMLAPAGAIAAGGLYTATEFDVCAFDPLRPSLVEMGRAVVREGHR Rv3027c|M.tuberculosis_H37Rv LVGCYRMLAPAGAIAAGGLYTATEFDVCAFDPLRPSLVEMGRAVVREGHR MMAR_1686|M.marinum_M LVGCYRMLPPAGAIAAGGLYTATEFDVGAFDPLRPSLVEMGRAAVRDGHR MUL_1924|M.ulcerans_Agy99 LVGCYRMLPPAGAIAAGGLYTATEFDVGAFDPLRPSLVEMGRAAVRDGHR MAV_3874|M.avium_104 LVGCYRMLAPAGAIAAGGLYTATEFDIRAFDPLRPSLVEMGRAVVRDGHR Mflv_4257|M.gilvum_PYR-GCK LVGCYRMLPPPGAIAAGGLYTATEFDISALDALRPSLVEMGRAVVRDGHR MAB_3359c|M.abscessus_ATCC_199 VVGCYRMLPPPGAIAAGGLYSATEFDISGLDSLRPQLVEMGRAVVRGDHR :*******.*.*********:*****: .:* ***.*******.** .** MSMEG_2355|M.smegmatis_MC2_155 NGAVVLLMWAGILAYLDHAGYDHVTGCVSVPVAGA---AGEAP-GAQIRG Mvan_2103|M.vanbaalenii_PYR-1 NGAVVLLMWAGILAYLDHSGYDYVAGCVSVPVADP---EGRSPAGSQLRG Mb3053c|M.bovis_AF2122/97 NGGVVLLMWAGILAYLDRYGYDYVTGCVSVPIGG----DGETP-GSRLRG Rv3027c|M.tuberculosis_H37Rv NGGVVLLMWAGILAYLDRYGYDYVTGCVSVPIGG----DGETP-GSRLRG MMAR_1686|M.marinum_M NGAVVLLMWAGILAYLDRCDYDYVTGCVSVPIVEPTGRDGITP-GRELRG MUL_1924|M.ulcerans_Agy99 NGAVVLLMWAGILAYLDRCDYDYVTGCVSVPIVEPTGRDGITP-GRELRG MAV_3874|M.avium_104 NGGVVLLMWAGILAYLDRYGYDYVTGCVSVPIGD---ADDAPP-GSRLRG Mflv_4257|M.gilvum_PYR-GCK NGAVVLLMWTGILAYLDRSGYDYVTGCVSVPVADP---DGLTPPGSRLRG MAB_3359c|M.abscessus_ATCC_199 NGAVVLLMWAGILAYLDRCDYTYVTGCVSVPMQDS---PEQAP-GSQVRA **.******:*******: .* :*:******: .* * .:*. MSMEG_2355|M.smegmatis_MC2_155 VRDFVRRRHAAP--YTVHPYRPVVLDGRTLDDIAPPERVTVPALMRGYLR Mvan_2103|M.vanbaalenii_PYR-1 VRDFVIRRHAAPAEYTVRPYRPVVVDGRPLDEIEPPARLSVPALMRGYLR Mb3053c|M.bovis_AF2122/97 VRDFILNRHAAPPQCQVYPYRPVRVDGRSLDDILPPPRPAVPPLMRGYLR Rv3027c|M.tuberculosis_H37Rv VRDFILNRHAAPPQCQVYPYRPVRVDGRSLDDILPPPRPAVPPLMRGYLR MMAR_1686|M.marinum_M VRDFVLRRH--PASYRVDPYRPVRIDGKSLDDIAPPPRPAIPPLLRGYLR MUL_1924|M.ulcerans_Agy99 VRDFVLRRH--PASYRVDPYRPVRIDGKSLDDIAPPPRPAIPPLLRGYLR MAV_3874|M.avium_104 VRDFVVSRHGAPARYRVRPHRPVVVDGTALDDIPPPARPSVPALMRGYLR Mflv_4257|M.gilvum_PYR-GCK VRDLVRRRNAAPPEYTVRPYRPVVIDGHHLDDIAAPPRVKVPALLRGYLR MAB_3359c|M.abscessus_ATCC_199 VRDFVMKRHAAAPQYTVRPYNPVVVGGMGLDDIAPPAKVQVPALMRGYLR ***:: *: . * *:.** :.* **:* .* : :*.*:***** MSMEG_2355|M.smegmatis_MC2_155 LGAQVCGEPAHDPVFGVGDFPALLDKRQADVRYLRRLRSA-SAAAHMTDG Mvan_2103|M.vanbaalenii_PYR-1 LGAQVCGEPAHDPDFGVGDFPALLAKRHADTRYLRRLRSVGMATAAVADG Mb3053c|M.bovis_AF2122/97 LGARACGEPAHDPDFGVGDFCLLLDKDHADTRYLRRLRSVAAASEMVNDA Rv3027c|M.tuberculosis_H37Rv LGARACGEPAHDPDFGVGDFCLLLDKDHADTRYLRRLRSVAAASEMVNDA MMAR_1686|M.marinum_M LGAQACGEPAHDPDFGVGDFCVLLGKRDADIRYLKRLRSVSAAAEMAGEL MUL_1924|M.ulcerans_Agy99 LGAQACGEPAHDPDFGVGDFCVLLGKRDADIRYLKRLRSVSAAAEMAGEL MAV_3874|M.avium_104 LGAQVCGEPAHDPDFGVGDFCVLLGKQDADTRYLKRLRSVSAAAELAGGR Mflv_4257|M.gilvum_PYR-GCK LGAQVCGEPAHDPDFGVGDFPALLDKRRADVRYLTRLRSAAAAAADVTR- MAB_3359c|M.abscessus_ATCC_199 LGAKVLGEPAHDPDFGVADFMALLNKNEADVRYLKRLRSVGAASEIGATT ***:. ******* ***.** ** * ** *** ****. *: MSMEG_2355|M.smegmatis_MC2_155 AA---- Mvan_2103|M.vanbaalenii_PYR-1 TRS--- Mb3053c|M.bovis_AF2122/97 R----- Rv3027c|M.tuberculosis_H37Rv R----- MMAR_1686|M.marinum_M AGGAA- MUL_1924|M.ulcerans_Agy99 AGGAA- MAV_3874|M.avium_104 ------ Mflv_4257|M.gilvum_PYR-GCK ------ MAB_3359c|M.abscessus_ATCC_199 VPSESE