For questions or suggestions e-mail us at: ioerger@cs.tamu.edu

M. marinum M MMAR_5191 (selB)

annotation: selenocysteine-specific translation elongation factor, SelB
coordinates: 6272087 - 6273802
length: 571

VFVIATAGHVDHGKSTLVHRLTDMWPDRLAEEQRRGLTIDLGFAWTELDGRQLAFVDVPGHERFVTNMLA
GSGAMPPDSPVLFVVAATEGWMPQSEEHLAALDALRVRHALLVISKADLADPGPAIRAASERFATTSMAD
PFVALGTELDQVRTKLLALTDRLPEPDRDADVRLWVDRAFTVRGAGTVVTGTLSAGTIRVGDELEHAGQR
VTVRGLQSLGRDHTEVAAVARVALNLRGVDRRHIARGDTVRTPGAWLDTTEIDVSLRSAVKLHRELVAHL
GSAAVPVYVRALGAEAARLRLSRPLPLRVGDIGLLRDPGQHRIAAGIEVLDVAPPSLRRRGAARERAQEL
AGGRIRPPQCARAAVLRAMGLPLAGLRVGDWLVDPQWWAARREHAAATVTHWAADHDVAAGMPLETLRQQ
VGLPAAELVPPLLVGTGLDVADGLVRPPGAGLPARVDAAVRTLEGRLAAEPFRAPEADELGELRLGAREL
AAAVRAGRLTRVADAIVLGPDAFERAAEILATLPQPFTVSQARRVLGTTRRVAVPLLEQLDALGITRRGE
AGTRTLLTTPG
Operon Prediction Model: Genebank

Paralogs
speciesidgenee-valueidentity (len)annotation
M. marinum MMMAR_5191selB-100% (571)selenocysteine-specific translation elongation factor, SelB
M. marinum MMMAR_1014tuf5e-3031.99% (297) iron-regulated elongation factor EF-Tu, Tuf
M. marinum MMMAR_4132cysN1e-1226.76% (299) bifunctional enzyme CysN/CysC: sulfate adenyltransferase

Closest Orthologs (e-value cutoff: 1e-4)
speciesidgenee-valueidentity (len)annotation
M. bovis AF2122 / 97Mb0704tuf5e-3133.00% (297) elongation factor Tu
M. gilvum PYR-GCKMflv_5075-2e-3132.00% (300) elongation factor Tu
M. tuberculosis H37RvRv0685tuf5e-3133.00% (297) elongation factor Tu
M. leprae Br4923MLBr_01877tuf5e-3031.65% (297) elongation factor Tu
M. abscessus ATCC 19977MAB_3848c-7e-2930.36% (303) elongation factor Tu
M. avium 104MAV_0417-0.077.23% (571) elongation factor Tu GTP binding domain-containing protein
M. smegmatis MC2 155MSMEG_1849selB0.071.02% (566) selenocysteine-specific translation elongation factor
M. thermoresistible (build 8)TH_4394-9e-3332.67% (300) PUTATIVE translation elongation factor 1A (EF-1A/EF-Tu)
M. ulcerans Agy99MUL_0766tuf3e-3031.99% (297) elongation factor Tu
M. vanbaalenii PYR-1Mvan_1282-3e-3132.33% (300) elongation factor Tu

CLUSTAL 2.0.9 multiple sequence alignment


Mb0704|M.bovis_AF2122/97            MAKAKFQRTKPHVNIGTIGHVDHGKTTLTAAITKVLHDKFPDLNETKAFD
Rv0685|M.tuberculosis_H37Rv         MAKAKFQRTKPHVNIGTIGHVDHGKTTLTAAITKVLHDKFPDLNETKAFD
MLBr_01877|M.leprae_Br4923          MAKAKFERTKPHVNIGTIGHVDHGKTTLTAAITKVLHDKFPNLNESRAFD
MUL_0766|M.ulcerans_Agy99           MAKAKFQRTKPHVNIGTIGHVDHGKTTLTAAITKVLHDKYPELNESRAFD
Mflv_5075|M.gilvum_PYR-GCK          MAKAKFERTKPHVNIGTIGHVDHGKTTLTAAITKVLHDQYPDLNESRAFD
Mvan_1282|M.vanbaalenii_PYR-1       MAKAKFERTKPHVNIGTIGHVDHGKTTLTAAITKVLHDKYPDLNESRAFD
MAB_3848c|M.abscessus_ATCC_199      MAKAKFERTKPHVNIGTIGHVDHGKTTLTAAITKVLHDKYPDLNEASAFD
TH_4394|M.thermoresistible__bu      VAKAKFERTKPHVNIGTIGHVDHGKTTTTAAITKVLHDKYPELNESRAFE
MMAR_5191|M.marinum_M               -----------MFVIATAGHVDHGKSTLVHRLTDMWPDR-----------
MAV_0417|M.avium_104                -----------MFVLATAGHVDHGKSTLLHRLTGMWPDR-----------
MSMEG_1849|M.smegmatis_MC2_155      -----------MFVVATAGHVDHGKSTLVHRLTGMWPDR-----------
                                                . :.* *******:*    :* :  *:           

Mb0704|M.bovis_AF2122/97            QIDNAPEERQRGITINIAHVEYQTDKRHYAHVDAPGHADYIKNMITGAAQ
Rv0685|M.tuberculosis_H37Rv         QIDNAPEERQRGITINIAHVEYQTDKRHYAHVDAPGHADYIKNMITGAAQ
MLBr_01877|M.leprae_Br4923          QIDNAPEERQRGITINISHVEYQTEKRHYAHVDAPGHADYIKNMITGAAQ
MUL_0766|M.ulcerans_Agy99           QIDNAPEERQRGITINISHVEYQTEKRHYAHVDAPGHADYIKNMITGAAQ
Mflv_5075|M.gilvum_PYR-GCK          QIDNAPEERQRGITINISHVEYQTEKRHYAHVDAPGHADYIKNMITGAAQ
Mvan_1282|M.vanbaalenii_PYR-1       QIDNAPEERQRGITINISHVEYQTDKRHYAHVDAPGHADYIKNMITGAAQ
MAB_3848c|M.abscessus_ATCC_199      QIDNAPEEKARGITINISHVEYQTEKRHYAHVDAPGHADYIKNMITGAAQ
TH_4394|M.thermoresistible__bu      QIDNAPEERQRGITINISHVEYQTEKRHYAHVDAPGHADYIKNMITGAAQ
MMAR_5191|M.marinum_M               ----LAEEQRRGLTIDLGFAWTELDGRQLAFVDVPGHERFVTNMLAGSGA
MAV_0417|M.avium_104                ----LAEEQRRGLTIDLGFVWTELAGRRLAFVDVPGHERFVANMLAGVGP
MSMEG_1849|M.smegmatis_MC2_155      ----LAEEQRRGLTIDLGFAWTTLEGRDIAFVDVPGHERFVGNMLAGVGP
                                         .**: **:**::...      *  *.**.***  :: **::* . 

Mb0704|M.bovis_AF2122/97            MDG---AILVVAATDGPMPQTREHVLLARQVGVPYILVALNKADAVD---
Rv0685|M.tuberculosis_H37Rv         MDG---AILVVAATDGPMPQTREHVLLARQVGVPYILVALNKADAVD---
MLBr_01877|M.leprae_Br4923          MDG---AILVVAATDGPMPQTREHVLLARQVGVPYILVALNKSDAVD---
MUL_0766|M.ulcerans_Agy99           MDG---AILVVAATDGPMPQTREHVLLARQVGVPYILVALNKSDAVD---
Mflv_5075|M.gilvum_PYR-GCK          MDG---AILVVAATDGPMPQTREHVLLARQVGVPYILVALNKADMVD---
Mvan_1282|M.vanbaalenii_PYR-1       MDG---AILVVAATDGPMPQTREHVLLARQVGVPYILVALNKADMVD---
MAB_3848c|M.abscessus_ATCC_199      MDG---AILVVAATDGPMPQTREHVLLARQVGVPYILVALNKSDMVD---
TH_4394|M.thermoresistible__bu      MDG---AILVVAATDGPMPQTREHVLLARQVGVPYILVALNKADMVD---
MMAR_5191|M.marinum_M               MPPDSPVLFVVAATEGWMPQSEEHLAALDALRVRHALLVISKADLADPGP
MAV_0417|M.avium_104                VP---AVVFVVAATEGWMPQSEEHLAALDALRVRHGLLVISKADLADPGP
MSMEG_1849|M.smegmatis_MC2_155      VP---ATMFVVAATEGWMPQSEEHLAALEALGVRHTLVVISKADLADPAR
                                    :     .::*****:* ***:.**:     : * : *:.:.*:* .*   

Mb0704|M.bovis_AF2122/97            -------------------------DEELLELVEMEVRELLAAQEFD---
Rv0685|M.tuberculosis_H37Rv         -------------------------DEELLELVEMEVRELLAAQEFD---
MLBr_01877|M.leprae_Br4923          -------------------------DEELLELVEMEVRELLAAQEFD---
MUL_0766|M.ulcerans_Agy99           -------------------------DEELLELVEMEVRELLAAQEFD---
Mflv_5075|M.gilvum_PYR-GCK          -------------------------DEELIELVEMEVRELLAAQDFD---
Mvan_1282|M.vanbaalenii_PYR-1       -------------------------DEELIELVEMEVRELLAAQDFD---
MAB_3848c|M.abscessus_ATCC_199      -------------------------DEELLELVEMEVRELLSSQDFDG--
TH_4394|M.thermoresistible__bu      -------------------------DPELLELVEMEVRELLASQEFD---
MMAR_5191|M.marinum_M               AIRAASERFATTSMADPFVALGTELDQVRTKLLALTDRLPEPDRDADVRL
MAV_0417|M.avium_104                AVAQATERFAATSLAGAPVAIGTDLERVRAELVALTDRLPPPDPHADVRL
MSMEG_1849|M.smegmatis_MC2_155      AIAQVRDR-----IPDARVVLGTDLGSVQAELVALVDRLPAPATDSDVRL
                                                                  :*: :  *   .  . *   

Mb0704|M.bovis_AF2122/97            -------------------------------EDAPVVRVSALKALEGDAK
Rv0685|M.tuberculosis_H37Rv         -------------------------------EDAPVVRVSALKALEGDAK
MLBr_01877|M.leprae_Br4923          -------------------------------EDAPVVRVSALKALEGDAK
MUL_0766|M.ulcerans_Agy99           -------------------------------EDAPVVRVSALKALEGDPK
Mflv_5075|M.gilvum_PYR-GCK          -------------------------------EDAPVVKVSALKALEGDEK
Mvan_1282|M.vanbaalenii_PYR-1       -------------------------------EEAPVVKVSALKALEGDEK
MAB_3848c|M.abscessus_ATCC_199      -------------------------------DNAPVVRVSALKALEGDAE
TH_4394|M.thermoresistible__bu      -------------------------------ENAPVIPISALKALEGDPK
MMAR_5191|M.marinum_M               WVDRAFTVRGAGTVVTGTLSAGTIRVGDELEHAGQRVTVRGLQSLGRDHT
MAV_0417|M.avium_104                WVDRSFTVRGAGTVVTGTLAAGTVRVGDELEHAGRRVTVRGLQSLGRNEI
MSMEG_1849|M.smegmatis_MC2_155      WVDRSFTVRGAGTVVTGTLAAGTIRVGDQLERDGRLVTVRGLQSLGRDRD
                                                                     .  : : .*::*  :  

Mb0704|M.bovis_AF2122/97            WVASVEELMNAVDESIPDPVR-----ETDKPFLMPVEDVFTITG---RGT
Rv0685|M.tuberculosis_H37Rv         WVASVEELMNAVDESIPDPVR-----ETDKPFLMPVEDVFTITG---RGT
MLBr_01877|M.leprae_Br4923          WVESVTQLMDAVDESIPAPVR-----ETDKPFLMPVEDVFTITG---RGT
MUL_0766|M.ulcerans_Agy99           WVESVEQLMDAVDESIPDPVR-----ETDRPFLMPVEDVFTITG---RGT
Mflv_5075|M.gilvum_PYR-GCK          WVKSVQELMAAVDESIPDPVR-----ETDKPFLMPVEDVFTITG---RGT
Mvan_1282|M.vanbaalenii_PYR-1       WVKSVEELMEAVDESIPDPVR-----ETDKPFLMPVEDVFTITG---RGT
MAB_3848c|M.abscessus_ATCC_199      WGKTVADLMDAVDESIPDPVR-----ETEKPFLMPVEDVFTITG---RGT
TH_4394|M.thermoresistible__bu      WVKSVEDLMEAVDESIPDPVR-----DTDKPFLMPIEDVFTITG---RGT
MMAR_5191|M.marinum_M               EVAAVARVALNLRGVDRRHIARGDTVRTPGAWLDTTEIDVSLR----SAV
MAV_0417|M.avium_104                RVGAVARVALNLRGVDRRDIGRGDTVRTPGAWRDTAEIDVALRGPGTAED
MSMEG_1849|M.smegmatis_MC2_155      AVSAVARVAVNLRGVERESLRRGDAVRTPGAWLDTSEVDVVLR----SAG
                                       :*  :   :       :       *  .:  . *  . :        

Mb0704|M.bovis_AF2122/97            VVTGRVERGVINVNEEVEIVGIRPSTTKTTVTG-----VEMFRKLLDQGQ
Rv0685|M.tuberculosis_H37Rv         VVTGRVERGVINVNEEVEIVGIRPSTTKTTVTG-----VEMFRKLLDQGQ
MLBr_01877|M.leprae_Br4923          VVTGRVERGVVNVNEEVEIVGIRQTTTKTTVTG-----VEMFRKLLDQGQ
MUL_0766|M.ulcerans_Agy99           VVTGRVERGIINVNEEVEIVGIRPTSTKTTVTG-----VEMFRKLLDQGQ
Mflv_5075|M.gilvum_PYR-GCK          VVTGRVERGVINVNEEVEIVGIRPTVTKTTVTG-----VEMFRKLLDQGQ
Mvan_1282|M.vanbaalenii_PYR-1       VVTGRVERGIINVNEEVEIVGIRPDTTKTTVTG-----VEMFRKLLDQGQ
MAB_3848c|M.abscessus_ATCC_199      VVTGRVERGVINVNEDVEIVGIKDTTTKTTVTG-----VEMFRKLLDQGQ
TH_4394|M.thermoresistible__bu      VVTGRIERGVINVNDEVEIVGIRPETTKTTVTG-----VEMFRKLLDQGQ
MMAR_5191|M.marinum_M               KLHRELVAHLGSAAVPVYVRALGAEAARLRLSRPLPLRVGDIGLLRDPGQ
MAV_0417|M.avium_104                TLHSQLVLHVGSAAVPVRVRRLGPAAARLRLARPLPLRVADVGLLRDPGQ
MSMEG_1849|M.smegmatis_MC2_155      KLHQKLTLHIGSASVPVHVRPLGDVGARLRLTRALPLRIGDIGLLRDPGA
                                     :  .:   : ..   * :  :    ::  ::      :  .  * * * 

Mb0704|M.bovis_AF2122/97            AGDNVGLLLRGVKREDVER-------GQVVTKPGTTTPHTEFEGQVYILS
Rv0685|M.tuberculosis_H37Rv         AGDNVGLLLRGVKREDVER-------GQVVTKPGTTTPHTEFEGQVYILS
MLBr_01877|M.leprae_Br4923          AGDNVGLLLRGIKREDVER-------GQVVIKPGTTTPHTEFEGQVYILS
MUL_0766|M.ulcerans_Agy99           AGDNVGLLLRGIKREDVER-------GQVVVKPGTTTPHTEFEGQVYILS
Mflv_5075|M.gilvum_PYR-GCK          AGDNVGLLVRGIKREDVER-------GQVVVKPGTTTPHTEFEGSVYILS
Mvan_1282|M.vanbaalenii_PYR-1       AGDNVGLLLRGIKREDVER-------GQVVVKPGTTTPHTDFEGSVYILS
MAB_3848c|M.abscessus_ATCC_199      AGDNVGLLVRGVKREDVER-------GQVVVKPGTTTPHTEFEGSVYILS
TH_4394|M.thermoresistible__bu      AGDNVGLLLRGIKREDVER-------GQVVVQPGTTTPHTEFEGSVYILS
MMAR_5191|M.marinum_M               HRIAAGIEVLDVAPPSLRRRGAARERAQELAGGRIRPPQCARAAVLRAMG
MAV_0417|M.avium_104                HRIAAGVEVLDVRPPELRRRGAARLRAAELATGSAPAPHIVRADDLRAMG
MSMEG_1849|M.smegmatis_MC2_155      HRIVAGVEVLDVRPAPLRRRGDARARAAALATGRVTPPVCARAKDLRAMG
                                        .*: : .:    :.*       .  :      .*       :  :.

Mb0704|M.bovis_AF2122/97            KDEGGR-------HTPFFNNYRPQFYFRTTDVTGVVTLPEGTEMVMPGDN
Rv0685|M.tuberculosis_H37Rv         KDEGGR-------HTPFFNNYRPQFYFRTTDVTGVVTLPEGTEMVMPGDN
MLBr_01877|M.leprae_Br4923          KDEGGR-------HTPFFNNYRPQFYFRTTDVTGVVTLPEGTEMVMPGDN
MUL_0766|M.ulcerans_Agy99           KDEGGR-------HTPFFNNYRPQFYFRTTDVTGVVTLPEGTEMVMPGDN
Mflv_5075|M.gilvum_PYR-GCK          KDEGGR-------HTPFFNNYRPQFYFRTTDVTGVVTLPEGTEMVMPGDN
Mvan_1282|M.vanbaalenii_PYR-1       KDEGGR-------HTPFFNNYRPQFYFRTTDVTGVVTLPEGTEMVMPGDN
MAB_3848c|M.abscessus_ATCC_199      KDEGGR-------HTPFFNNYRPQFYFRTTDVTGVVTLPEGTEMVMPGDN
TH_4394|M.thermoresistible__bu      KDEGGR-------HTPFFNNYRPQFYFRTTDVTGVVTLPEGTEMVMPGDN
MMAR_5191|M.marinum_M               LPLAGLRVGDWLVDPQWWAARREHAAATVTHWAADHDVAAGMPLETLRQQ
MAV_0417|M.avium_104                VPARGQRVGDWVVDPQWWAERRDEAAAQVRRWAGEHDIAAGMPLETLRRQ
MSMEG_1849|M.smegmatis_MC2_155      FEVVGERIGDWVVSPEWWAERRRLALAAVEQWAAEHDIAAGMPFETLRQR
                                        *         . ::   *      .   :.   :. *  :     .

Mb0704|M.bovis_AF2122/97            TNISVKLIQPVAMDEG----------------------------------
Rv0685|M.tuberculosis_H37Rv         TNISVKLIQPVAMDEG----------------------------------
MLBr_01877|M.leprae_Br4923          TNISVTLIQPVAMDEG----------------------------------
MUL_0766|M.ulcerans_Agy99           TNISVKLIQPVAMDDG----------------------------------
Mflv_5075|M.gilvum_PYR-GCK          TDIAVKLIQPVAMDEG----------------------------------
Mvan_1282|M.vanbaalenii_PYR-1       TDISVKLIQPVAMDEG----------------------------------
MAB_3848c|M.abscessus_ATCC_199      TDISVKLIQPVAMDEG----------------------------------
TH_4394|M.thermoresistible__bu      TDISVKLIQPVAMEEG----------------------------------
MMAR_5191|M.marinum_M               VGLPAAELVPPLLVGTGLDVADGLVRPPGAGLPARVDAAVRTLEGRLAAE
MAV_0417|M.avium_104                VGLPAAELVPKLLQGTGFEVADGLVRAPGAGLPARVDKAVREVEAWLAAE
MSMEG_1849|M.smegmatis_MC2_155      VGLPAVELVPALLDGTGLQLRDGLVQRPGVALPPRVDKAVQTVREWLAAE
                                    ..:..  : *  :                                     

Mb0704|M.bovis_AF2122/97            ------------LRFAIREGGRTVGAGRVTKIIK----------------
Rv0685|M.tuberculosis_H37Rv         ------------LRFAIREGGRTVGAGRVTKIIK----------------
MLBr_01877|M.leprae_Br4923          ------------LRFAIREGGRTVGAGRVVKIIK----------------
MUL_0766|M.ulcerans_Agy99           ------------LRFAIREGGRTVGAGRVVKIIK----------------
Mflv_5075|M.gilvum_PYR-GCK          ------------LRFAIREGGRTVGAGRVTKIIK----------------
Mvan_1282|M.vanbaalenii_PYR-1       ------------LRFAIREGGRTVGAGRVTKIIK----------------
MAB_3848c|M.abscessus_ATCC_199      ------------LRFAIREGGRTVGAGRVTKIIK----------------
TH_4394|M.thermoresistible__bu      ------------LRFAIREGGRTVGAGRVTKIIK----------------
MMAR_5191|M.marinum_M               PFRAPEADELGELRLGARELAAAVRAGRLTRVADAIVLGPDAFERAAEIL
MAV_0417|M.avium_104                PFRAPEADELAGLGLGPRELAAAVRAGRLTRIADGVVLGPDALARAAGVL
MSMEG_1849|M.smegmatis_MC2_155      PFRAPEAAELAELNLGPKELAAAVRAGRFVRVADGVVLGPDAFDRAAEVL
                                                * :. :* . :* ***..:: .                

Mb0704|M.bovis_AF2122/97            --------------------------------------------------
Rv0685|M.tuberculosis_H37Rv         --------------------------------------------------
MLBr_01877|M.leprae_Br4923          --------------------------------------------------
MUL_0766|M.ulcerans_Agy99           --------------------------------------------------
Mflv_5075|M.gilvum_PYR-GCK          --------------------------------------------------
Mvan_1282|M.vanbaalenii_PYR-1       --------------------------------------------------
MAB_3848c|M.abscessus_ATCC_199      --------------------------------------------------
TH_4394|M.thermoresistible__bu      --------------------------------------------------
MMAR_5191|M.marinum_M               ATLPQPFTVSQARRVLGTTRRVAVPLLEQLDALGITRRGEAGTRTLLTTP
MAV_0417|M.avium_104                AGLPQPFTVSEARRALGTTRRVAVPLLEQLDARRVTRRASDGTRVLIAD-
MSMEG_1849|M.smegmatis_MC2_155      VGLPQPFTVAEAKRALNTTRRVAVPLLEQLDARGVTTRADDGTRTVRVSR
                                                                                      

Mb0704|M.bovis_AF2122/97            --------
Rv0685|M.tuberculosis_H37Rv         --------
MLBr_01877|M.leprae_Br4923          --------
MUL_0766|M.ulcerans_Agy99           --------
Mflv_5075|M.gilvum_PYR-GCK          --------
Mvan_1282|M.vanbaalenii_PYR-1       --------
MAB_3848c|M.abscessus_ATCC_199      --------
TH_4394|M.thermoresistible__bu      --------
MMAR_5191|M.marinum_M               G-------
MAV_0417|M.avium_104                --------
MSMEG_1849|M.smegmatis_MC2_155      AGDTGQAD