For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
MAKVQYSGVTYRYPGSGAPAVNNLDLEIADGEFLVLVGPSGCGKSTILRVLAGLESVESGRITIGDTDVT DLPPRARDVAMVFQNYALYPNMTVAQNMGFALRNAGMSRADTRQRVLEVASMLELTELLDRKPSKLSGGQ RQRVAMGRAIVRRPRVFCMDEPLSNLDAKLRVSTRSHISGLQRQLGTTTVYVTHDQVEAMTMGHRVAVLK DGVLQQVDTPRELYDNPVNTFVATFIGAPAMNLIEAPVADGVARLSGLVIPVPRGAADRVLIGVRPESWD VVGGDAAAALGVRVEQVEELGFESFIYATPVAQDGWSSRTRRIVIRSDRHTTVGAGDSLSIAPNPQEVCF FDSRTESRIR
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. marinum M | MMAR_1901 | - | - | 100% (360) | ABC-type sugar transport protein, ATPase component |
| M. marinum M | MMAR_3011 | - | e-109 | 58.71% (356) | sugar-transport ATP-binding protein ABC transporter |
| M. marinum M | MMAR_4203 | sugC | 8e-84 | 45.29% (393) | sugar-transport ATP-binding protein ABC transporter SugC |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | Mb2856c | ugpC | 1e-163 | 81.11% (360) | sn-glycerol-3-phosphate transport ATP-binding protein ABC |
| M. gilvum PYR-GCK | Mflv_3854 | - | 5e-86 | 48.94% (378) | ABC transporter related |
| M. tuberculosis H37Rv | Rv2832c | ugpC | 1e-163 | 81.11% (360) | sn-glycerol-3-phosphate transport ATP-binding protein ABC |
| M. leprae Br4923 | MLBr_01424 | - | 1e-101 | 56.02% (357) | putative binding-protein-dependent transport protein |
| M. abscessus ATCC 19977 | MAB_1375 | - | 1e-84 | 51.54% (324) | sugar ABC transporter, ATP-binding protein SugC |
| M. avium 104 | MAV_2479 | - | 1e-107 | 58.19% (354) | glycerol-phosphate porter |
| M. smegmatis MC2 155 | MSMEG_0508 | - | 1e-105 | 55.12% (361) | glycerol-phosphate porter |
| M. thermoresistible (build 8) | TH_3215 | - | 2e-95 | 57.78% (315) | PUTATIVE ABC transporter ATP-binding protein |
| M. ulcerans Agy99 | MUL_2252 | - | 1e-107 | 58.15% (356) | sugar-transport ATP-binding protein ABC transporter |
| M. vanbaalenii PYR-1 | Mvan_4484 | - | 2e-86 | 47.67% (386) | ABC transporter-related protein |
CLUSTAL 2.0.9 multiple sequence alignment
Mb2856c|M.bovis_AF2122/97 --MANVQYSAVTQRYPGADAPTVDNLDLDIADGEFLVLVGPSGCGKSTTL
Rv2832c|M.tuberculosis_H37Rv --MANVQYSAVTQRYPGADAPTVDNLDLDIADGEFLVLVGPSGCGKSTTL
MMAR_1901|M.marinum_M --MAKVQYSGVTYRYPGSGAPAVNNLDLEIADGEFLVLVGPSGCGKSTIL
MAV_2479|M.avium_104 MSMASVTFQQATRRYPGADRPALDNLNLVVGDGEFVVLVGPSGCGKTTSL
MUL_2252|M.ulcerans_Agy99 --MASVSFEGATRRYPGADRPAVDSLDLVVDDGEFVVLVGPSGCGKTTSL
MLBr_01424|M.leprae_Br4923 --MASVTFEQATRQFPDTDRPALDRLDLDVDDGEFVVVVGPSGCGKTTSL
MSMEG_0508|M.smegmatis_MC2_155 --MAAIRFEKAQLRYPHAPTPAVAELDLDIADGEFMVLVGPSGCGKSTTL
TH_3215|M.thermoresistible__bu --MATITYRNASCIYEGSDTFAVNSLNLEIEDGEFVVLVGPSGSGKSTAL
MAB_1375|M.abscessus_ATCC_1997 --MAEIVLNQVSKTYTDG-SAAVRDVSLNIADGEFIILVGPSGCGKSTTL
Mvan_4484|M.vanbaalenii_PYR-1 --MAEIVLDRVTKSYADG-TAAVKDLSITVADGEFVTLVGPSGCGKSTTL
Mflv_3854|M.gilvum_PYR-GCK --MAAITMRNIVKKYGDG-YPAVNDVSLDIADGEFVILVGPSGCGKSTLL
** : : :: :.: : ****: :*****.**:* *
Mb2856c|M.bovis_AF2122/97 RVLAGLEPIESGRISIGDVDVTHLPPRARDVAMVFQNYALYPNMTVAANM
Rv2832c|M.tuberculosis_H37Rv RVLAGLEPIESGRISIGDVDVTHLPPRARDVAMVFQNYALYPNMTVAANM
MMAR_1901|M.marinum_M RVLAGLESVESGRITIGDTDVTDLPPRARDVAMVFQNYALYPNMTVAQNM
MAV_2479|M.avium_104 RMVAGLETVDSGRILIGDRDVTNVDPKQRDVAMVFQNYALYPHMTVAQNM
MUL_2252|M.ulcerans_Agy99 RMLAGLEKVDAGRIRIAERDVTNVDPKSRDVAMVFQNYALYPHMTVAQNM
MLBr_01424|M.leprae_Br4923 RMVAGLETLDSGCIRIGDRDVTHVDPKDRDVAMVFQNYALYPHMTVAQNL
MSMEG_0508|M.smegmatis_MC2_155 RMLAGLEDLTSGSIYLDDRDITTTPPQDRDIAMVFQNYALYPHMTVAGNM
TH_3215|M.thermoresistible__bu RMLAGLEDIDDGDIEIGGRNMRGVPSKDRDIAMVFQNYALYPNKTVAENM
MAB_1375|M.abscessus_ATCC_1997 NMIAGLEDISSGELTIAGERVNEKAPKDRDIAMVFQSYALYPHMTVRQNI
Mvan_4484|M.vanbaalenii_PYR-1 NMIAGLEEITSGELRIDGERVNERSTKDRDIAMVFQSYALYPHMTVRQNI
Mflv_3854|M.gilvum_PYR-GCK RMIVGLEDITSGDMMIGDKRVNDMAPRDRNLAMVFQNYALYPHLTVFENI
.::.*** : * : : : .: *::*****.*****: ** *:
Mb2856c|M.bovis_AF2122/97 GFALRNA-GMSRADTRRRVLEVADMLELTDLLDRKPAKLSGGQRQRVAMG
Rv2832c|M.tuberculosis_H37Rv GFALRNA-GMSRADTRRRVLEVADMLELTDLLDRKPAKLSGGQRQRVAMG
MMAR_1901|M.marinum_M GFALRNA-GMSRADTRQRVLEVASMLELTELLDRKPSKLSGGQRQRVAMG
MAV_2479|M.avium_104 GFAMKIA-KTPKAQIRERVLDAAKLLDLQPYLDRKPKDLSGGQRQRVAMG
MUL_2252|M.ulcerans_Agy99 GFALKVA-KTPKAEIRDRVLQAAKLLDLEAYLDRKPKDLSGGQRQRVAMG
MLBr_01424|M.leprae_Br4923 GFALKIS-KISKAEIHDRILVVAKLLDLQPYLDRKPKDLSGGQRQRVAMG
MSMEG_0508|M.smegmatis_MC2_155 EFCLKNA-GLSKDERRRRVAAAAETLGLTEYLNRKPKALSGGQRQRVAMG
TH_3215|M.thermoresistible__bu GFALKLR-GVAASERRRKVEEAAKLLDLTEFLDRKPAKLSGGQRQRVAMG
MAB_1375|M.abscessus_ATCC_1997 AFPLTLA-KMSKDDINAKVAEAAKILDLTDYLDRKPANLSGGQRQRVAMG
Mvan_4484|M.vanbaalenii_PYR-1 GFPLTLA-KLSRQEIAEKVEQTAKTLDLTDLLDRKPDQLSGGQRQRVAMG
Mflv_3854|M.gilvum_PYR-GCK AFPLRLAGKLSDDEIRQRVNDAATTLELGEHLDRKPANLSGGQRQRVAMG
* : . : :: .* * * *:*** ************
Mb2856c|M.bovis_AF2122/97 RAIVRRPRVFCMDEPLSNLDAKLRVSTRSQISGLQRRLGTTTVYVTHDQV
Rv2832c|M.tuberculosis_H37Rv RAIVRRPRVFCMDEPLSNLDAKLRVSTRSQISGLQRRLGTTTVYVTHDQV
MMAR_1901|M.marinum_M RAIVRRPRVFCMDEPLSNLDAKLRVSTRSHISGLQRQLGTTTVYVTHDQV
MAV_2479|M.avium_104 RAIVRRPQVFLMDEPLSNLDAKLRVQTRNQIAALQRRLGTTTVYVTHDQV
MUL_2252|M.ulcerans_Agy99 RAIVRRPQVFLMDEPLSNLDTKLRVQTRNQIAGLQRQLGTTTVYVTHDQV
MLBr_01424|M.leprae_Br4923 RAIVRRPQVFLMDEPLSNLDAKLRAQTRNQIAELQCQLGTTTVYVTHDQV
MSMEG_0508|M.smegmatis_MC2_155 RAIVRNPQVFCMDEPLSNLDAKMRVQTRTDIAKLQRELGVTTIYVTHDQT
TH_3215|M.thermoresistible__bu RAIVREPQVFCMDEPLSNLDAKLRVQTRTQIAALQRRLGTTTVYVTHDQV
MAB_1375|M.abscessus_ATCC_1997 RAIVRSPKAFLMDEPLSNLDAKLRVQMRTEIARLQKRLGTTTVYVTHDQT
Mvan_4484|M.vanbaalenii_PYR-1 RAIVRNPKAFLMDEPLSNLDAKLRVQMRGEIARLQKRLGTTTVYVTHDQT
Mflv_3854|M.gilvum_PYR-GCK RAIVREADAFLFDEPLSNLDAKLRGQMRTEILRLQRKLGVTTVYVTHDQT
***** . .* :********:*:* . * .* ** .**.**:******.
Mb2856c|M.bovis_AF2122/97 EAMTMGDRVAVLKDGVLQQVDTPRALYDDPVNTFVATFIGAPAMNLIDAA
Rv2832c|M.tuberculosis_H37Rv EAMTMGDRVAVLKDGVLQQVDTPRALYDDPVNTFVATFIGAPAMNLIDAA
MMAR_1901|M.marinum_M EAMTMGHRVAVLKDGVLQQVDTPRELYDNPVNTFVATFIGAPAMNLIEAP
MAV_2479|M.avium_104 EAMTMGDRVAVLRDGVLQQFAPPRELYRNPSNVFVAGFIGSPAMNLFTLP
MUL_2252|M.ulcerans_Agy99 EAMTMGDRVAVLCDGVLQQCAAPRELYRRPDNVFVAGFIGSPAMNMFILP
MLBr_01424|M.leprae_Br4923 EAMTMGDRVAVLCYGVLQQFATPRELYHKPENVFVAGFIGSPGMNLVTLS
MSMEG_0508|M.smegmatis_MC2_155 EAMTMGDRVGVMKDGVLQQVGAPMDLYDRPANAFVAGFIGSPAMKFFDAQ
TH_3215|M.thermoresistible__bu EAMTMGDRVAVLKHGRLQQFASPGDLYHRPANAFVAGFIGSPAMNLFNAQ
MAB_1375|M.abscessus_ATCC_1997 EAMTLGDRVVVLRAGKVQQVGAPQELYDTPANLFVAGFIGSPSMNFFPAT
Mvan_4484|M.vanbaalenii_PYR-1 EAMTLGDRVVVMLGGAVQQIGTPDELYRGPANLFVAGFIGSPAMNFFPAA
Mflv_3854|M.gilvum_PYR-GCK EAMTLGDRVAVLKKGVLQQVASPRELYDQPVNLFVAGFIGSPPMNFVPAR
****:*.** *: * :** .* ** * * *** ***:* *::.
Mb2856c|M.bovis_AF2122/97 VAHGVVRAPDLAIPVP---DPAAER------VLVGVRPESWDVASIGTPG
Rv2832c|M.tuberculosis_H37Rv VAHGVVRAPDLAIPVP---DPAAER------VLVGVRPESWDVASIGTPG
MMAR_1901|M.marinum_M VADGVARLSGLVIPVP---RGAADR------VLIGVRPESWDVVGGDAAA
MAV_2479|M.avium_104 VVDSAVSLGDWPIALPREIAAAASE------VVVGVRPEHFELGGLG---
MUL_2252|M.ulcerans_Agy99 IVDSSVLLGDWLIQLPREVTVPAPE------VVVGVRPEHFEVGNLG---
MLBr_01424|M.leprae_Br4923 IVDSSVLLGDWPIRIPREIASAASE------VIIGVRPEHFELGSLG---
MSMEG_0508|M.smegmatis_MC2_155 L-------GDRTVGVAGHDMAVQCAADLRGPVLIGVRPEGWRLTAPDAG-
TH_3215|M.thermoresistible__bu LVPEGVQIGDTVLELERAQLTALHEAKLD-TVTVGLRPEHLELSD-AGG-
MAB_1375|M.abscessus_ATCC_1997 LTDVGVQLPFGEVTLDAGLYAGITARKPSGDVIVGIRPEQFEDAALVDTY
Mvan_4484|M.vanbaalenii_PYR-1 LTEIGVRLPFGEIPLTGQVYERLKGHRTCDDLIAGIRPEHLEDAAVIDAY
Mflv_3854|M.gilvum_PYR-GCK VTGNEIELPFATVPLRDEWRGSVEEGKVY---IAGIRPGAFEDAEFVDTD
: : : *:**
Mb2856c|M.bovis_AF2122/97 S------LTVHVELVEELGFESFVYATPVDQ-------------RGWSSR
Rv2832c|M.tuberculosis_H37Rv S------LTVHVELVEELGFESFVYATPVDQ-------------RGWSSR
MMAR_1901|M.marinum_M A------LGVRVEQVEELGFESFIYATPVAQ-------------DGWSSR
MAV_2479|M.avium_104 -------VEMEVDVVEELGADAYLYGRITG---------------SGKVI
MUL_2252|M.ulcerans_Agy99 -------VEMEIDVVEELGADAYLYGRISN---------------GGTMI
MLBr_01424|M.leprae_Br4923 -------VEVEIDMVEELGADAYLYGRIAG---------------ASKVT
MSMEG_0508|M.smegmatis_MC2_155 -------IAVKVGVVEVLGADSYLYG----T-------------AIHAGA
TH_3215|M.thermoresistible__bu -------VEVVVDLVEDLGSEAYLY--------------------THTGS
MAB_1375|M.abscessus_ATCC_1997 KRITGLTLTVNADVVESLGSDKYVHFTTEGGAAHSDELTELAQE--SEVA
Mvan_4484|M.vanbaalenii_PYR-1 ARIGALVFDVTVEMVESLGADKYVYFGVDGPGAEAVQLTEVAAE--STVG
Mflv_3854|M.gilvum_PYR-GCK KASRGVTFDVEIDVTEWLGNEQYAFVPFEATTEISGQLAELANELDSEQL
. : .* ** : : .
Mb2856c|M.bovis_AF2122/97 APRIVFRTDRRTAVRVGESLAIVPHSQ-EVRLFNSRTETRLR--------
Rv2832c|M.tuberculosis_H37Rv APRIVFRTDRRTAVRVGESLAIVPHSQ-EVRLFNSRTETRLR--------
MMAR_1901|M.marinum_M TRRIVIRSDRHTTVGAGDSLSIAPNPQ-EVCFFDSRTESRIR--------
MAV_2479|M.avium_104 DAPIVARVDGRNPPEKGSRVRLHPAPG-HLHFFG-RNGQRIGVRGSW---
MUL_2252|M.ulcerans_Agy99 DQSVVARADGSNPPERGSRVRLYPQPA-QLHFFT-VDGRRIA--------
MLBr_01424|M.leprae_Br4923 DQLVVARVDGRNPPAKGSRVRLYTEPG-NVHFFG-VDGHRIS--------
MSMEG_0508|M.smegmatis_MC2_155 DVDVVVRVSTRDGIRADDTVHVTADPD-AIHLFDNETGVRLN--------
TH_3215|M.thermoresistible__bu GVDLVARCLDRVPAKLADTVRLRKRTDGVVHLFHPDTGERVGE-------
MAB_1375|M.abscessus_ATCC_1997 ENEFVARLSAASKVAEGQPIELIIDTG-KLVIFDAESGENLS--------
Mvan_4484|M.vanbaalenii_PYR-1 ENEFVARVPAQSGAAVGRTLQLALNPD-NVLLFDPRTGANLS--------
Mflv_3854|M.gilvum_PYR-GCK RTQICVELDPLSRVRSGDKATLWLDSE-RLHLFDPHSGDNLTRVSHERPR
. . : . : :* .:
Mb2856c|M.bovis_AF2122/97 ----------------
Rv2832c|M.tuberculosis_H37Rv ----------------
MMAR_1901|M.marinum_M ----------------
MAV_2479|M.avium_104 ----------------
MUL_2252|M.ulcerans_Agy99 ----------------
MLBr_01424|M.leprae_Br4923 ----------------
MSMEG_0508|M.smegmatis_MC2_155 ----------------
TH_3215|M.thermoresistible__bu ----------------
MAB_1375|M.abscessus_ATCC_1997 ----------LAATAE
Mvan_4484|M.vanbaalenii_PYR-1 ----------LPAVGA
Mflv_3854|M.gilvum_PYR-GCK EQNPPESRGRHAATAG