For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
MSTSGALVRSASCLAAALFLAAAPAVSGTASPLGRAEPGAEPNAAPTNCPYKVNTPPAVDSSEVPTAGDP PMPLAVPAKPVGGDALGSCGIVAAPNTPPLPGDVSAEAWLVADLDSGAVIAAKDPHGRHRPASIIKVLVA MAAINTLNLNKAVPGTADDAAAEGTKVGVEEGGVFTVNQLLHGLLMHSGNDAAHALAMQLGGMQQALEKI NVLAAKLGGQDTRVATPSGLDAPGMSTSAYDIGLFYRYAWQNPTFADIVATRTFDFPGHGDHPGYELEND NQLLYKYPGALGGKTGYTDDAGQTFVGAANHDGRRLVAVLLHGTRQPIAPWEQAAHLLDYGFATPQGTQV GSLIAPDPSLAPAKRDGAADRLAGNTAAAGMISSADALPVRVGVAVIGTIVVFTLIMMARSMNRRPQHR
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. avium 104 | MAV_4305 | - | - | 100% (419) | D-alanyl-D-alanine carboxypeptidase |
| M. avium 104 | MAV_3766 | - | 4e-56 | 43.53% (278) | D-alanyl-D-alanine carboxypeptidase |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | Mb3363 | dacB1 | 0.0 | 78.21% (413) | penicillin-binding protein DacB1 |
| M. gilvum PYR-GCK | Mflv_4869 | - | 1e-157 | 67.94% (418) | Serine-type D-Ala-D-Ala carboxypeptidase |
| M. tuberculosis H37Rv | Rv3330 | dacB1 | 0.0 | 78.21% (413) | penicillin-binding protein DacB1 |
| M. leprae Br4923 | MLBr_00691 | - | 0.0 | 77.35% (415) | putative D-alanyl-D-alanine carboxypeptidase |
| M. abscessus ATCC 19977 | MAB_3681 | - | 1e-144 | 61.48% (418) | penicillin-binding protein DacB1 |
| M. marinum M | MMAR_1192 | dacC | 0.0 | 79.71% (414) | penicillin-binding protein DacC |
| M. smegmatis MC2 155 | MSMEG_1661 | - | 1e-153 | 66.59% (413) | D-alanyl-D-alanine carboxypeptidase |
| M. thermoresistible (build 8) | TH_1977 | - | 1e-152 | 65.48% (420) | PROBABLE PENICILLIN-BINDING PROTEIN DACB1 (D-ALANYL-D-ALANINE |
| M. ulcerans Agy99 | MUL_1445 | dacC | 0.0 | 79.71% (414) | penicillin-binding protein DacC |
| M. vanbaalenii PYR-1 | Mvan_1562 | - | 1e-159 | 69.10% (411) | Serine-type D-Ala-D-Ala carboxypeptidase |
CLUSTAL 2.0.9 multiple sequence alignment
Mflv_4869|M.gilvum_PYR-GCK ----------------MATLRTTLLRASALVTASMLALAPAAAAQPAPAA
Mvan_1562|M.vanbaalenii_PYR-1 ----------------MATLRTLLTRSSALVTAAMLILAPVAAAQPPAEA
MSMEG_1661|M.smegmatis_MC2_155 ----------------MTRRAVTAVGALALLTAPLMT-----AGVAGAEP
TH_1977|M.thermoresistible__bu ------MA----IFSSVTRRLVAVGAAIAVLAMPAISSLPTAAADPVAEA
Mb3363|M.bovis_AF2122/97 ------MA----FLRSVSCLAAAVFA------VGTGIGLPTAAGEPNAAP
Rv3330|M.tuberculosis_H37Rv ------MA----FLRSVSCLAAAVFA------VGTGIGLPTAAGEPNAAP
MMAR_1192|M.marinum_M ------MY----LLRAASCLAAAVFMAAGPAVVGMPAALPSASAEPNAEA
MUL_1445|M.ulcerans_Agy99 ------MY----LLRAASCLAAAVFMAAGPAVVGMPAALPSASAEPNAEA
MAV_4305|M.avium_104 ------MSTSGALVRSASCLAAALFLAAAPAVSG--TASPLGRAEPGAEP
MLBr_00691|M.leprae_Br4923 ------MS----FLRSTACLAAAVFAIVGPVALDLPTAVPVGHAEPNAGP
MAB_3681|M.abscessus_ATCC_1997 MTTWTPAPDRRPSPRTAVTRLAAATAAGLIVAVLPLCAPPLASAEPGFTP
. . . .
Mflv_4869|M.gilvum_PYR-GCK ----DPCPYRVTTPPAVDASEVPKPGDPTPGPLPVPAKPMGGDALSGCGV
Mvan_1562|M.vanbaalenii_PYR-1 ----NTCPYRVTTPPAVDASEVPKPGDPTPGPLPVPAKPMGGDALSGCGV
MSMEG_1661|M.smegmatis_MC2_155 G---VDCPYRETTPPAVDASEVPKPGEAAPGPLPVPPKAIGGEALSGCGV
TH_1977|M.thermoresistible__bu G---DPCPYRETTPPAISASEVPKPGEDPPAPLPVPATAVGGDALSGCGV
Mb3363|M.bovis_AF2122/97 ----AACPYKVSTPPAVDSSEVPAAGE-PPLPLVVPPTPVGGNALGGCGI
Rv3330|M.tuberculosis_H37Rv ----AACPYKVSTPPAVDSSEVPAAGE-PPLPLVVPPTPVGGNALGGCGI
MMAR_1192|M.marinum_M NSGAQECPYRVTTPPAVDSSEVPQAGE-PPLPLAVPSAPVGGNALGGCGI
MUL_1445|M.ulcerans_Agy99 NSGAQECPYRVTTPPAVDSSEVPQAGE-PPLPLAVPSAPVGGNALGGCGI
MAV_4305|M.avium_104 NAAPTNCPYKVNTPPAVDSSEVPTAGD-PPMPLAVPAKPVGGDALGSCGI
MLBr_00691|M.leprae_Br4923 NAGPATCPYQVSTPPAVDSSEVPQTGN-PPMPLAVPPKPVGGAALNSCGI
MAB_3681|M.abscessus_ATCC_1997 P-DTSGCPYKVVTPPAVDTSEVPKAGGDPPAPLPVPAKPIGGEMLGRCDV
***: ****:.:**** .* .* ** **. .:** *. *.:
Mflv_4869|M.gilvum_PYR-GCK ITAPGTPPVPGDVSAEAWLVADLDSGDVIAARDPHGRHRPASIIKVLTAM
Mvan_1562|M.vanbaalenii_PYR-1 ITAPGTPPVPADVSAEAWLVADLDSGDVIAARDPHGRHRPASIIKVLTAM
MSMEG_1661|M.smegmatis_MC2_155 ITAPNTPPVPEDVSAEAWIVADMDTGDVIAARDPHGRHRPASIIKVLTAT
TH_1977|M.thermoresistible__bu IVAPGTPPLPTEISAEAWLVADLDTGDVIAAKDPHGRHRPASVIKALTAM
Mb3363|M.bovis_AF2122/97 ITAPGSAPAPGDVSAEAWLVADLDSGAVIAARDPHGRHRPASVIKVLVAM
Rv3330|M.tuberculosis_H37Rv ITAPGSAPAPGDVSAEAWLVADLDSGAVIAARDPHGRHRPASVIKVLVAM
MMAR_1192|M.marinum_M IAAPDTPPVPGDVSAEAWLVGDLDSGAIIAARDPHARHRPASIIKVLVAM
MUL_1445|M.ulcerans_Agy99 IAAPDTPPVPGDVSAEAWLVGDLDSGAIIAARDPHGRHRPASIIKVLVVM
MAV_4305|M.avium_104 VAAPNTPPLPGDVSAEAWLVADLDSGAVIAAKDPHGRHRPASIIKVLVAM
MLBr_00691|M.leprae_Br4923 VTAPDTPPVPGDLSAEAWLVADLNSGAVIAARDPHGRHRPASIIKVLLAM
MAB_3681|M.abscessus_ATCC_1997 ITPDGAGPVPNDISAESWLIADLNTGNVVAAKDPHARHRPASVIKVLVAM
:.. .: * * ::***:*::.*:::* ::**:***.******:**.* .
Mflv_4869|M.gilvum_PYR-GCK QALRDLPLMKTVPGTPEDAAQEGTKVGVGEGGVYTVNDLLHGLLMYSGND
Mvan_1562|M.vanbaalenii_PYR-1 QAINDLPLHKVIPGTEEDAAQEGTKVGVGPGGFYSINDLLHGLLMYSGND
MSMEG_1661|M.smegmatis_MC2_155 AALNELNLNKRVAGTQDDANAEGTRVGVGPGGQYTINDLLHGLLMYSGND
TH_1977|M.thermoresistible__bu AAINELPLNRQVHGTAQDSAIEGTKVGVGPGGVYTVRDLLHGLMMYSGND
Mb3363|M.bovis_AF2122/97 ASINTLTLNKSVAGTADDAAVEGTKVGVNTGGTYTVNQLLHGLLMHSGND
Rv3330|M.tuberculosis_H37Rv ASINTLTLNKSVAGTADDAAVEGTKVGVNTGGTYTVNQLLHGLLMHSGND
MMAR_1192|M.marinum_M VSIKELNQNKAVPGTNDDSAAEGTKVGVNAGGMYTVNQLLHGLLMHSGND
MUL_1445|M.ulcerans_Agy99 VSIKELNQNKAVPGTNDDSAAEGTKVGVNAGGMYTVNQLLHGLLMHSGND
MAV_4305|M.avium_104 AAINTLNLNKAVPGTADDAAAEGTKVGVEEGGVFTVNQLLHGLLMHSGND
MLBr_00691|M.leprae_Br4923 ASINTLNLNKSVAGTAEDAAAEGTKVGVHDGGTYTINQLLHGLLMQSGND
MAB_3681|M.abscessus_ATCC_1997 EAINNLNLNQAVVGTQEDANSEGTRVGVDVGGTYTVRQLLTGLLMNSGND
::. * : : ** :*: ***:*** ** :::.:** **:* ****
Mflv_4869|M.gilvum_PYR-GCK AAHALAMQMGGMDTALNKINVLAQKLGARDTRVATPSGLDGPGMSTSVYD
Mvan_1562|M.vanbaalenii_PYR-1 AAHALAMQMGGMQTALNKINALAGKLGARDTRVATPSGLDGPGMSTSAYD
MSMEG_1661|M.smegmatis_MC2_155 AAHALAMQLGGWDPALQKLNTLAAKLGGRDTRAATPSGLDGPGMSTSAYD
TH_1977|M.thermoresistible__bu AANALANQMGGVDVALDKLNALAAKLGAQDTRAASPSGLDGPGMSTSAYD
Mb3363|M.bovis_AF2122/97 AAYALARQLGGMPAALEKINLLAAKLGGRDTRVATPSGLDGPGMSTSAYD
Rv3330|M.tuberculosis_H37Rv AAYALARQLGGMPAALEKINLLAAKLGGRDTRVATPSGLDGPGMSTSAYD
MMAR_1192|M.marinum_M AAHALAIQLGGMQTALEKINMLAAKLGGRDTRVATPSGLDGPGMSTSAYD
MUL_1445|M.ulcerans_Agy99 AAHALAIQLGGMQTALEKINMLAAKLGGRDTRVATPSGLDGPGMSTSAYD
MAV_4305|M.avium_104 AAHALAMQLGGMQQALEKINVLAAKLGGQDTRVATPSGLDAPGMSTSAYD
MLBr_00691|M.leprae_Br4923 AAHSLAMQLGGMQQALQKINVLAAKLGGQDTRVATPSGLDGPGMSTSAYD
MAB_3681|M.abscessus_ATCC_1997 AAHALAVQLGGMDETVAKINDMAQKLGARDTRAATPSGLDGPGMSTSAYD
** :** *:** :: *:* :* ***.:***.*:*****.******.**
Mflv_4869|M.gilvum_PYR-GCK MGLFYRYAWHNPVFADIVATRATQFPGR-------EGAG-YPIENDNKLL
Mvan_1562|M.vanbaalenii_PYR-1 IGLFYRYAWQNPVFTDIVATRSSNFPGR-------DGAG-YPIENDNKLL
MSMEG_1661|M.smegmatis_MC2_155 IALFYRYAWQNPVFADIVHTQSYQFPGR-------DGGS-YPIENDNKLL
TH_1977|M.thermoresistible__bu IALIYRYAWQDPTFSQIVATRSYHFPGR-------EGSPPYEILNDNQLL
Mb3363|M.bovis_AF2122/97 IGLFYRYAWQNPVFADIVATRTFDFPGH-------GDHPGYELENDNQLL
Rv3330|M.tuberculosis_H37Rv IGLFYRYAWQNPVFADIVATRTFDFPGH-------GDHPGYELENDNQLL
MMAR_1192|M.marinum_M IGLFYRYAWQNPIFADIVATRTFDFPGH-------GEHPGYELENDNHLL
MUL_1445|M.ulcerans_Agy99 IGLFYRYAWQNPIFADIVATRTFDFPGH-------GEHPGYELENDNHLL
MAV_4305|M.avium_104 IGLFYRYAWQNPTFADIVATRTFDFPGH-------GDHPGYELENDNQLL
MLBr_00691|M.leprae_Br4923 IGLFYRYAWQNPSFSNIVATRTFNFPGP-------GDHPGYQLENDNQLL
MAB_3681|M.abscessus_ATCC_1997 LGLFYKYAFADPTFADLVSAPKATFPGHPAKPGERDDHPAYEMTNDNKLL
:.*:*:**: :* *:::* : *** * : ***:**
Mflv_4869|M.gilvum_PYR-GCK ANYPGALGGKTGYTDDAGQTFVGAAERDGRRLVAVLMRGTRQPIAPWEQA
Mvan_1562|M.vanbaalenii_PYR-1 ANYPGALGGKTGFTDDAGQTFVGAATRDGRRLVAVLLRGTRQPIAPWEQA
MSMEG_1661|M.smegmatis_MC2_155 ANYPGALGGKTGYTDDAGQTFVGAAERDGRRLIAVLLKGTRVPIAPWEQA
TH_1977|M.thermoresistible__bu MNYPGALGGKTGFTDDAGQTFVGAAERDGRRLVAVLLRGTRQPIPPWQQA
Mb3363|M.bovis_AF2122/97 YNYPGALGGKTGYTDDAGQTFVGAANRDGRRLMTVLLHGTRQPIPPWEQA
Rv3330|M.tuberculosis_H37Rv YNYPGALGGKTGYTDDAGQTFVGAANRDGRRLMTVLLHGTRQPIPPWEQA
MMAR_1192|M.marinum_M YNYPGALGGKTGYTDDAGQTFVGAANHNGRRLFAVLLHGTRQPIAPWEQA
MUL_1445|M.ulcerans_Agy99 YNYPGALGGKTGYTDDAGQTFVGAANHNGRRLFAVLLHGTRQPIAPWEQA
MAV_4305|M.avium_104 YKYPGALGGKTGYTDDAGQTFVGAANHDGRRLVAVLLHGTRQPIAPWEQA
MLBr_00691|M.leprae_Br4923 YQYPGALGGKTGYTDDAGQTFVGAANRNGRRLMAVLLHGTRQPIAPWEQA
MAB_3681|M.abscessus_ATCC_1997 YNYPGALGGKTGYTDDAQQTFVGAAERDGRRLVVTMLRGTRLPIAPWEQA
:**********:**** ******* ::****...:::*** **.**:**
Mflv_4869|M.gilvum_PYR-GCK ARLLDYGFATAPGTKVGTLIEPDPSLGVDRADPAVAALTKTNANANAVLP
Mvan_1562|M.vanbaalenii_PYR-1 ARLLDYGFATAPGTKVGSLIEPDPSLGVTRADPAAATTTT----ANAVLP
MSMEG_1661|M.smegmatis_MC2_155 ARLLDYGFATPPGTKVGTLVDPDPSLAPKQAEEP--SPAQ----AASVLP
TH_1977|M.thermoresistible__bu AQLLDYGFATAPGTRVGTLVDPDPSVSRQKINTSGEADTA----AAPILL
Mb3363|M.bovis_AF2122/97 AHLLDYGFNTPAGTQIGTLIEPDPSLMSTDR-NPADRQRVD-PQAAARIS
Rv3330|M.tuberculosis_H37Rv AHLLDYGFNTPAGTQIGTLIEPDPSLMSTDR-NPADRQRVD-PQAAARIS
MMAR_1192|M.marinum_M AHLLDYGFSTAQGTQIGSLIEPDPSLVAPKE-TPEARRLAD-AQAAGLVS
MUL_1445|M.ulcerans_Agy99 AHLLDYGFSTAQGTQIGSLIEPDPSLVAPKE-TPEARRLAD-AQAAGLVS
MAV_4305|M.avium_104 AHLLDYGFATPQGTQVGSLIAPDPSLAPAKRDGAADRLAGN-TAAAGMIS
MLBr_00691|M.leprae_Br4923 AHLLDYGFSTAVGTQIGTLIEPDPTVA-----GNADRHGHG-LQAAGIMS
MAB_3681|M.abscessus_ATCC_1997 AHLLDYGFSTPRDASIGKLVDPDPSLLTKPHADDTPSAQA----AGLPAE
*:****** *. .: :*.*: ***:: *
Mflv_4869|M.gilvum_PYR-GCK DVDAMPVRIGVGVIGAVIVLTLIMGARALNSRPAR-
Mvan_1562|M.vanbaalenii_PYR-1 DVDAMPVRIGVGVIGAVIVFSLIMGARALNRRPAR-
MSMEG_1661|M.smegmatis_MC2_155 PADAMPVRVGVAVVGAIIVFMLILGARQLNQRPQH-
TH_1977|M.thermoresistible__bu PADAVPVRVGVAVIGTIIVFGLIMAARSMNRRSHR-
Mb3363|M.bovis_AF2122/97 AADALPVRVGVAVIGALIVFGLIMVARAMNRRPQH-
Rv3330|M.tuberculosis_H37Rv AADALPVRVGVAVIGALIVFGLIMVARAMNRRPQH-
MMAR_1192|M.marinum_M SADALPVRVGVAVIGAIIVFGLMLVARSLNNRPQH-
MUL_1445|M.ulcerans_Agy99 SADALPVRVGVAVIGAIIVFGLMLVARSLNNRPQH-
MAV_4305|M.avium_104 SADALPVRVGVAVIGTIVVFTLIMMARSMNRRPQHR
MLBr_00691|M.leprae_Br4923 SNDTLPVRIGVAVVGTLIVFGLIMITRSLNRRPQH-
MAB_3681|M.abscessus_ATCC_1997 AINSVPVRVGVTIIGAMIVFGLILAARSLNRRQA--
:::***:** ::*:::*: *:: :* :* *