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M. thermoresistible (build 8) TH_2183 (sdhB)

annotation: PROBABLE SUCCINATE DEHYDROGENASE (IRON-SULPHUR PROTEIN SUBUNIT) SDHB (SUCCINIC DEHYDROGENASE) (FUMARATE REDUCTASE) (FUMARATE DEHYDROGENASE) (FUMARIC HYDROGENASE)
coordinates: 4279822 - 4280610
length: 263

aa seq not available

Operon Prediction Model: Genebank

Paralogs

species id gene e-value identity (len) annotation
M. thermoresistible (build 8) TH_2183 sdhB - 100% (263) PROBABLE SUCCINATE DEHYDROGENASE (IRON-SULPHUR PROTEIN SUBUNIT) SDHB (SUCCINIC DEHYDROGENASE) (FUMARATE REDUCTASE) (FUMARATE DEHYDROGENASE) (FUMARIC HYDROGENASE)
M. thermoresistible (build 8) TH_1916 - 2e-15 26.76% (213) PROBABLE SUCCINATE DEHYDROGENASE

Closest Orthologs (e-value cutoff: 1e-4)

species id gene e-value identity (len) annotation
M. bovis AF2122 / 97 Mb3348 sdhB 1e-134 84.96% (266) succinate dehydrogenase iron-sulfur subunit
M. gilvum PYR-GCK Mflv_4847 sdhB 1e-136 87.60% (258) succinate dehydrogenase iron-sulfur subunit
M. tuberculosis H37Rv Rv3319 sdhB 1e-134 84.96% (266) succinate dehydrogenase iron-sulfur subunit
M. leprae Br4923 MLBr_00696 sdhB 1e-129 84.98% (253) succinate dehydrogenase iron-sulfur subunit
M. abscessus ATCC 19977 MAB_3676 sdhB 1e-134 85.38% (260) succinate dehydrogenase iron-sulfur subunit
M. marinum M MMAR_1200 sdhB 1e-132 87.25% (251) succinate dehydrogenase (iron-sulphur protein subunit) SdhB
M. avium 104 MAV_4300 sdhB 1e-128 79.63% (270) succinate dehydrogenase iron-sulfur subunit
M. smegmatis MC2 155 MSMEG_1669 sdhB 1e-143 91.09% (258) succinate dehydrogenase iron-sulfur subunit
M. ulcerans Agy99 MUL_1370 sdhB 1e-129 85.26% (251) succinate dehydrogenase iron-sulfur subunit
M. vanbaalenii PYR-1 Mvan_1586 sdhB 1e-137 88.93% (253) succinate dehydrogenase iron-sulfur subunit

CLUSTAL 2.0.9 multiple sequence alignment


MMAR_1200|M.marinum_M               MSLDTERASSDDVTDSLAPPLPPVPDGAVMVTVKIARFNPDDPEAFASTG
MUL_1370|M.ulcerans_Agy99           --MDTERASSDDVTDSLAPPLPPVPDGAVMVTVKIARYNPDDPEAFASTG
Mb3348|M.bovis_AF2122/97            --MSVEP-----DVETLDPPLPPVPDGAVMVTVKIARFNPDEPDAFAATG
Rv3319|M.tuberculosis_H37Rv         --MSVEP-----DVETLDPPLPPVPDGAVMVTVKIARFNPDDPDAFAATG
MAV_4300|M.avium_104                --MSVEP-----DVETLEPPLPPVPDEAVMVTVKIARFNPDQPDAYAETG
MLBr_00696|M.leprae_Br4923          --MAVEPV----EVKSLEPPRPPISDDAVMVTVKIARFNPDNPDAFAETG
Mflv_4847|M.gilvum_PYR-GCK          ---MSAPV--LDKQ-----DTPPVPEGAVMVTLKIARFNPESPDD----A
Mvan_1586|M.vanbaalenii_PYR-1       ---MSAPT--LEKA-----ELPPVPEGAVMVTLKIARFNPESPDD----A
MSMEG_1669|M.smegmatis_MC2_155      ---MSAPV--IDKPEAGDPELPPVPEGAVMVTLKIARFNPENPDA----A
TH_2183|M.thermoresistible__bu      --MTITPD--IDKPATTDAPLPPVPEGAVMVTLKIARFNPENPDA----A
MAB_3676|M.abscessus_ATCC_1997      ----MTAV--IEKAEAGDPPLPPVPEGAVMVDLKIQRFNPEDPDA----A
                                                         **:.: **** :** *:**:.*:     .

MMAR_1200|M.marinum_M               GWQSFRVPCLPSDRLLNLLIYIKGYLDGTLTFRRSCAHGVCGSDAMRING
MUL_1370|M.ulcerans_Agy99           GWQSFRVPCLPSDRLLNLLIYIKGYLDGTLTFRRSCAHGVCGSDAMRING
Mb3348|M.bovis_AF2122/97            GWQSFRVPCLPSDRLLNLLIYIKGYLDGTLTFRRSCAHGVCGSDAMRING
Rv3319|M.tuberculosis_H37Rv         GWQSFRVPCLPSDRLLNLLIYIKGYLDGTLTFRRSCAHGVCGSDAMRING
MAV_4300|M.avium_104                GWQSFRVPCLPSDRMLNLLIYIKSYLDGTLTFRRSCAHGVCGSDAMRING
MLBr_00696|M.leprae_Br4923          GWQSFRVPCLPTDRLLNLLIYIKGYLDGTLTFRRSCAHGVCGSDAMRVNG
Mflv_4847|M.gilvum_PYR-GCK          GWQSFRVPCLPSDRLLNLLHYVKWYLDGTLTFRRSCAHGVCGSDAMRING
Mvan_1586|M.vanbaalenii_PYR-1       GWQSFRVPCLPSDRLLNLLHYVKWYLDGTLTFRRSCAHGVCGSDAMRING
MSMEG_1669|M.smegmatis_MC2_155      GWQSFRVPCLPSDRLLNLLHYVKWYLDGTLTFRRSCAHGVCGSDAMRING
TH_2183|M.thermoresistible__bu      GFQSFRVPTLPTDRLLNLLHYVKWYLDGTLTFRRSCAHGVCGSDAMRVNG
MAB_3676|M.abscessus_ATCC_1997      GWQTFRVPCLPTDRLLNLLLYVKGYLDGTLTFRRSCAHGVCGSDAMRING
                                    *:*:**** **:**:**** *:* ***********************:**

MMAR_1200|M.marinum_M               VNRLACKVLMRDLLPKKP----GKQLTLTVEPIRGLPVEKDLVVDMEPFF
MUL_1370|M.ulcerans_Agy99           VNRLACKVLMRDLLPKKS----GKQLTLTVEPIRGLPVEKDLVVDMEPFF
Mb3348|M.bovis_AF2122/97            VNRLACKVLMRDLLPKKK----GKSLTVTVEPIRGLPVEKDLVVDMEPFF
Rv3319|M.tuberculosis_H37Rv         VNRLACKVLMRDLLPKKK----GKSLTVTVEPIRGLPVEKDLVVDMEPFF
MAV_4300|M.avium_104                VNRLACKVLMRDLLPEPKKGKPGKPLTITVEPIRGLPVEKDLVVDMEPFF
MLBr_00696|M.leprae_Br4923          VNRLACKVLMRDLLPKKA----GKNLTITVEPIRGLPVEKDLVVDMEPFF
Mflv_4847|M.gilvum_PYR-GCK          VNRLACKVLMRDMLPKNP----NKQLTITIEPIRGLPVEKDLVVDMEPFF
Mvan_1586|M.vanbaalenii_PYR-1       VNRLACKVLMRDMLPKNP----KKQLTITIEPIRGLPVEKDLVVDMEPFF
MSMEG_1669|M.smegmatis_MC2_155      VNRLACKVLMRDMLPKNP----NKQLTITIEPIRGLPVEKDLVVNMEPFF
TH_2183|M.thermoresistible__bu      VNRLACKVLMRDLLPKNP----KKELTVTVEPIRGLPVEKDLVVDMEPFF
MAB_3676|M.abscessus_ATCC_1997      VNRLACKVLMRDLLPKNP----KKTLTITIEPIRGLPVEKDLVVNMEPFF
                                    ************:**:       * **:*:**************:*****

MMAR_1200|M.marinum_M               DAYRAVKPYLITSGNPPTRERIQSPTDRARYDDTTKCILCACCTTSCPVF
MUL_1370|M.ulcerans_Agy99           DAYRAVKPYLITSGNPPTRERIQSPTDRARYDDTTKCILCACCTTSCPVF
Mb3348|M.bovis_AF2122/97            DAYRAIKPYLITSGNPPTRERIQSPTDRARYDDTTKCILCACCTTSCPVF
Rv3319|M.tuberculosis_H37Rv         DAYRAIKPYLITSGNPPTRERIQSPTDRARYDDTTKCILCACCTTSCPVF
MAV_4300|M.avium_104                DAYRAVKPYLITTGNPPTRERIQSPADRARYDDTTKCILCAACTTSCPIF
MLBr_00696|M.leprae_Br4923          DAYRAVKPYLITSGNPPTRERIQSPTDRARYDDTTKCILCACCTTSCPVF
Mflv_4847|M.gilvum_PYR-GCK          DAFRAVKPYLITSGNQPTRERIQSQTDRARYDDTTKCILCACCTTSCPVY
Mvan_1586|M.vanbaalenii_PYR-1       DAFRAIKPYLITSGNQPTRERIQSQTDRARYDDTTKCILCACCTTSCPVY
MSMEG_1669|M.smegmatis_MC2_155      DAYRAVKPFLVTSGNPPTKERIQSPTDRARYDDTTKCILCACCTTSCPVY
TH_2183|M.thermoresistible__bu      DAYRAVKPFLVTSGNPPTRERLQSPQDRARYDDTTKCILCACCTTSCPVY
MAB_3676|M.abscessus_ATCC_1997      DAYRAVKPFMITSGNQPTREYIQSQTDRARFDDTTKCILCACCTTSCPVF
                                    **:**:**:::*:** **:* :**  ****:**********.******::

MMAR_1200|M.marinum_M               WNEGSYFGPAAIVNAHRFIFDSRDEAAAERLDILNEVDGVWRCRTTFNCT
MUL_1370|M.ulcerans_Agy99           WNEGSYLGPAAIVNAHRFIFDSRDEAAAERVDILNEVDGVWRCRTTFNCT
Mb3348|M.bovis_AF2122/97            WHEGSYFGPAAIVNAHRFIFDSRDEAAAERLDILNEVDGVWRCRTTFNCT
Rv3319|M.tuberculosis_H37Rv         WHEGSYFGPAAIVNAHRFIFDSRDEAAAERLDILNEVDGVWRCRTTFNCT
MAV_4300|M.avium_104                WHEGSYYGPAAIVNAHRFIFDSRDEGAAERLDILNEVDGVWRCRTTFNCT
MLBr_00696|M.leprae_Br4923          WSEGTYYGPAAIVNAHRFIFDSRDEGAGERLTLLNEVDGVWRCRTTFNCT
Mflv_4847|M.gilvum_PYR-GCK          WSEGSYFGPAAIVNAHRFIFDSRDEAAAERLDILNDIDGVWRCRTTFNCT
Mvan_1586|M.vanbaalenii_PYR-1       WNEGSYFGPAAIVNAHRFIFDSRDEGAAERLDILNDVDGVWRCRTTFNCT
MSMEG_1669|M.smegmatis_MC2_155      WSEGSYFGPAAIVNAHRFIFDSRDEAAAERLDILNEVDGVWRCRTTFNCT
TH_2183|M.thermoresistible__bu      WTEGSYFGPAAIVNAHRFIFDSRDEAAGERLDILNEVDGVWRCRTTFNCT
MAB_3676|M.abscessus_ATCC_1997      WSDGSYFGPAAIVNAHRFIFDSRDEAAAERLDILNDVDGVWRCRTTFNCT
                                    * :*:* ******************.*.**: :**::*************

MMAR_1200|M.marinum_M               EACPRGIEVTKAIQEVKRALLFSR
MUL_1370|M.ulcerans_Agy99           EACPRGIEATKAIQEVKRALLFSR
Mb3348|M.bovis_AF2122/97            ESCPRGIEVTKAIQEVKRALMFTR
Rv3319|M.tuberculosis_H37Rv         ESCPRGIEVTKAIQEVKRALMFTR
MAV_4300|M.avium_104                DACPRGIEVTKAIQEVKRAIMFSR
MLBr_00696|M.leprae_Br4923          ESCPRNIEVTKAIQEVKRALMFSR
Mflv_4847|M.gilvum_PYR-GCK          EACPRGIQVTKAIQEVKRALMFAR
Mvan_1586|M.vanbaalenii_PYR-1       EACPRGIQVTKAIQEVKRALMFAR
MSMEG_1669|M.smegmatis_MC2_155      EACPRGIQVTQAIQEVKRALMFAR
TH_2183|M.thermoresistible__bu      ESCPRGIQVTKAIQEVKRALMFAR
MAB_3676|M.abscessus_ATCC_1997      DACPRGIEVTKAIQEVKRALMFAR
                                    ::***.*:.*:********::*:*

species	id	gene	e-value	identity (len)	annotation
M. thermoresistible (build 8)	TH_2183	sdhB	-	100% (263)	PROBABLE SUCCINATE DEHYDROGENASE (IRON-SULPHUR PROTEIN SUBUNIT) SDHB (SUCCINIC DEHYDROGENASE) (FUMARATE REDUCTASE) (FUMARATE DEHYDROGENASE) (FUMARIC HYDROGENASE)
M. thermoresistible (build 8)	TH_1916	-	2e-15	26.76% (213)	PROBABLE SUCCINATE DEHYDROGENASE