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M. thermoresistible (build 8) TH_2180 (sdhC)

annotation: PROBABLE SUCCINATE DEHYDROGENASE (CYTOCHROME B-556 SUBUNIT) SDHC (SUCCINIC DEHYDROGENASE) (FUMARATE REDUCTASE) (FUMARATE DEHYDROGENASE) (FUMARIC HYDROGENASE)
coordinates: 4277255 - 4277593
length: 113

aa seq not available

Operon Prediction Model: Genebank

Paralogs

species id gene e-value identity (len) annotation
M. thermoresistible (build 8) TH_2180 sdhC - 100% (113) PROBABLE SUCCINATE DEHYDROGENASE (CYTOCHROME B-556 SUBUNIT) SDHC (SUCCINIC DEHYDROGENASE) (FUMARATE REDUCTASE) (FUMARATE DEHYDROGENASE) (FUMARIC HYDROGENASE)

Closest Orthologs (e-value cutoff: 1e-4)

species id gene e-value identity (len) annotation
M. bovis AF2122 / 97 Mb3345 sdhC 2e-47 72.97% (111) succinate dehydrogenase cytochrome B-556 subunit
M. gilvum PYR-GCK Mflv_4844 - 1e-53 83.04% (112) succinate dehydrogenase, cytochrome b subunit
M. tuberculosis H37Rv Rv3316 sdhC 2e-47 72.97% (111) succinate dehydrogenase cytochrome B-556 subunit
M. leprae Br4923 MLBr_00699 sdhC 1e-45 71.17% (111) putative succinate dehydrogenase cytochrome B-556 subunit
M. abscessus ATCC 19977 MAB_3673 - 4e-52 82.14% (112) succinate dehydrogenase (cytochrome b-556 subunit) SdhC
M. marinum M MMAR_1203 sdhC 4e-47 75.00% (112) succinate dehydrogenase (cytochrome B-556 subunit) SdhC
M. avium 104 MAV_4297 sdhC 2e-42 66.67% (111) succinate dehydrogenase, cytochrome b556 subunit
M. smegmatis MC2 155 MSMEG_1672 sdhC 3e-54 86.61% (112) succinate dehydrogenase, cytochrome b556 subunit
M. ulcerans Agy99 MUL_1367 sdhC 1e-46 74.11% (112) succinate dehydrogenase (cytochrome B-556 subunit) SdhC
M. vanbaalenii PYR-1 Mvan_1589 - 8e-56 87.50% (112) succinate dehydrogenase, cytochrome b subunit

CLUSTAL 2.0.9 multiple sequence alignment


Mflv_4844|M.gilvum_PYR-GCK          -MSTATSADTDLPEPRSKPTRRR----TFYRGDPGMWSWLLHRISGATIF
Mvan_1589|M.vanbaalenii_PYR-1       -MSTATPADTDIPAPRSEPSRRR----TIYRGDPGMWSWVLHRISGATIF
MSMEG_1672|M.smegmatis_MC2_155      -MSTQT----EVPAPQPKKTRRR----TLYRGDPGMWSWVLHRITGATIF
TH_2180|M.thermoresistible__bu      -----------------------------------MWSWVLHRITGATIF
MAB_3673|M.abscessus_ATCC_1997      -MTTATP--ETASSGREGNRLKR----SLYRGDPGMWSWVLHRITGATIF
MMAR_1203|M.marinum_M               -----------------------------------MWSWVLHRITGAAIF
MUL_1367|M.ulcerans_Agy99           -----------------------------------MWSWVLHRITGAAIF
Mb3345|M.bovis_AF2122/97            -----------------------------------MWSWVCHRISGATIF
Rv3316|M.tuberculosis_H37Rv         -----------------------------------MWSWVCHRISGATIF
MLBr_00699|M.leprae_Br4923          MRTTATPANPATSRPVAASSRRRRPPTTTYRGDPGMWSWVLHRISGATIF
MAV_4297|M.avium_104                -----------------------------------MWSWVLHRISGATIF
                                                                       ****: ***:**:**

Mflv_4844|M.gilvum_PYR-GCK          FFLFVHVLDTALVRVSPQAYNEVIETYKTPIVGLMEIGLVAAVLYHALNG
Mvan_1589|M.vanbaalenii_PYR-1       FFLFVHVLDTALVRVSPQAYNEVIETYKTPIVGLMEIGLVAAVLYHALNG
MSMEG_1672|M.smegmatis_MC2_155      FFLFVHVLDTALVRVSPQAYNEVIETYKTPIVGLMEIGLVAAVLFHALNG
TH_2180|M.thermoresistible__bu      FFLFVHVLDTALVRVSPEAYNAVIETYKTPIVGLMEIGLVAAVLFHALNG
MAB_3673|M.abscessus_ATCC_1997      FFLFVHVLDTALVRVSPESYNSVIETYKTPIVGLMELGLVAAVLYHALNG
MMAR_1203|M.marinum_M               FFLFVHVLDTALVRVSPQAYNSVIDTYKTPIVGLMEFGLVIAVSYHALNG
MUL_1367|M.ulcerans_Agy99           FFLFVHVLDTALVRVRPQAYNSVIDTYKTPIVGLMEFGLVIAVSYHALNG
Mb3345|M.bovis_AF2122/97            FFLFVHVLDAAMLRVSPQTYNAVLATYKTPIVGLMEYGLVAAVLFHALNG
Rv3316|M.tuberculosis_H37Rv         FFLFVHVLDAAMLRVSPQTYNAVLATYKTPIVGLMEYGLVAAVLFHALNG
MLBr_00699|M.leprae_Br4923          FFLFVHVLDAAMLRVNPQTYNAVLSTYKAPIVGFMEYGLVAAVGFHGLNG
MAV_4297|M.avium_104                FFLFVHVLDAAMLRVSPQTYNAVIHDYQMPIVGVMEYGLIAAVLFHGLNG
                                    *********:*::** *::** *:  *: ****.** **: ** :*.***

Mflv_4844|M.gilvum_PYR-GCK          IRIILIDFWSEGPRHQRKMLWIIAGIFIVLFTAGLGVIGMHMAERFL---
Mvan_1589|M.vanbaalenii_PYR-1       IRIILIDFWSEGPRHQRKMLWVIAGVFIAVFIAALGVIGMHMAERFL---
MSMEG_1672|M.smegmatis_MC2_155      IRVILIDFWAKGPRYQRQMLAVIAGLFLVIFIAAVGVIGMHMVERFL---
TH_2180|M.thermoresistible__bu      VRVILIDFWSEGPRYQRQMLWVVAAIFIAVLIAAVGMIGMHMAERFL---
MAB_3673|M.abscessus_ATCC_1997      VRVILVDFWSKGPRYQRLMLWIIGAVWFVVMVPAVTRILMHMAERFL---
MMAR_1203|M.marinum_M               IRIILIDFWSEGPRYQRLMLAVVGVAWLLILVPSAVVLGIHMAEHFL---
MUL_1367|M.ulcerans_Agy99           IRIILIDFWSEGPRYQRLMLAVVGVAWLLILVPSAVVLGIHMAEHFL---
Mb3345|M.bovis_AF2122/97            IRVILIDFWSEGPRYQRLMLWIIGSVFLLLMVPAGVVVGIHMWEHFR---
Rv3316|M.tuberculosis_H37Rv         IRVILIDFWSEGPRYQRLMLWIIGSVFLLLMVPAGVVVGIHMWEHFR---
MLBr_00699|M.leprae_Br4923          IRVILIDFWSEGPRHQRLMLWIISVIFLLLLVPAGVVIGIHMWEHFRMWE
MAV_4297|M.avium_104                IRVILIDFWSEGPRHQRLMFWIVGVVFLLLMVPAGVVTVIHMLGHFR---
                                    :*:**:***::***:** *: ::.  :: :: ..     :**  :*    

Mflv_4844|M.gilvum_PYR-GCK          ---
Mvan_1589|M.vanbaalenii_PYR-1       ---
MSMEG_1672|M.smegmatis_MC2_155      ---
TH_2180|M.thermoresistible__bu      ---
MAB_3673|M.abscessus_ATCC_1997      ---
MMAR_1203|M.marinum_M               ---
MUL_1367|M.ulcerans_Agy99           ---
Mb3345|M.bovis_AF2122/97            ---
Rv3316|M.tuberculosis_H37Rv         ---
MLBr_00699|M.leprae_Br4923          HFR
MAV_4297|M.avium_104                ---

species	id	gene	e-value	identity (len)	annotation
M. thermoresistible (build 8)	TH_2180	sdhC	-	100% (113)	PROBABLE SUCCINATE DEHYDROGENASE (CYTOCHROME B-556 SUBUNIT) SDHC (SUCCINIC DEHYDROGENASE) (FUMARATE REDUCTASE) (FUMARATE DEHYDROGENASE) (FUMARIC HYDROGENASE)