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M. avium 104 MAV_4297 (sdhC)

annotation: succinate dehydrogenase, cytochrome b556 subunit
coordinates: 4428269 - 4428607
length: 112

MWSWVLHRISGATIFFFLFVHVLDAAMLRVSPQTYNAVIHDYQMPIVGVMEYGLIAAVLFHGLNGIRVIL
IDFWSEGPRHQRLMFWIVGVVFLLLMVPAGVVTVIHMLGHFR
Operon Prediction Model: Genebank

Paralogs
speciesidgenee-valueidentity (len)annotation
M. avium 104MAV_4297sdhC-100% (112)succinate dehydrogenase, cytochrome b556 subunit

Closest Orthologs (e-value cutoff: 1e-4)
speciesidgenee-valueidentity (len)annotation
M. bovis AF2122 / 97Mb3345sdhC8e-5384.82% (112) succinate dehydrogenase cytochrome B-556 subunit
M. gilvum PYR-GCKMflv_4844-6e-4267.57% (111) succinate dehydrogenase, cytochrome b subunit
M. tuberculosis H37RvRv3316sdhC8e-5384.82% (112) succinate dehydrogenase cytochrome B-556 subunit
M. leprae Br4923MLBr_00699sdhC4e-5383.93% (112) putative succinate dehydrogenase cytochrome B-556 subunit
M. abscessus ATCC 19977MAB_3673-6e-4467.57% (111) succinate dehydrogenase (cytochrome b-556 subunit) SdhC
M. marinum MMMAR_1203sdhC3e-4470.27% (111) succinate dehydrogenase (cytochrome B-556 subunit) SdhC
M. smegmatis MC2 155MSMEG_1672sdhC5e-4065.77% (111) succinate dehydrogenase, cytochrome b556 subunit
M. thermoresistible (build 8)TH_2180sdhC2e-4266.67% (111) PROBABLE SUCCINATE DEHYDROGENASE (CYTOCHROME B-556 SUBUNIT)
M. ulcerans Agy99MUL_1367sdhC9e-4469.37% (111) succinate dehydrogenase (cytochrome B-556 subunit) SdhC
M. vanbaalenii PYR-1Mvan_1589-2e-4268.47% (111) succinate dehydrogenase, cytochrome b subunit

CLUSTAL 2.0.9 multiple sequence alignment


Mflv_4844|M.gilvum_PYR-GCK          -MSTATSADTDLPEPRSKPTRRR----TFYRGDPGMWSWLLHRISGATIF
Mvan_1589|M.vanbaalenii_PYR-1       -MSTATPADTDIPAPRSEPSRRR----TIYRGDPGMWSWVLHRISGATIF
MSMEG_1672|M.smegmatis_MC2_155      -MSTQT----EVPAPQPKKTRRR----TLYRGDPGMWSWVLHRITGATIF
TH_2180|M.thermoresistible__bu      -----------------------------------MWSWVLHRITGATIF
MAB_3673|M.abscessus_ATCC_1997      -MTTATP--ETASSGREGNRLKR----SLYRGDPGMWSWVLHRITGATIF
MMAR_1203|M.marinum_M               -----------------------------------MWSWVLHRITGAAIF
MUL_1367|M.ulcerans_Agy99           -----------------------------------MWSWVLHRITGAAIF
MAV_4297|M.avium_104                -----------------------------------MWSWVLHRISGATIF
MLBr_00699|M.leprae_Br4923          MRTTATPANPATSRPVAASSRRRRPPTTTYRGDPGMWSWVLHRISGATIF
Mb3345|M.bovis_AF2122/97            -----------------------------------MWSWVCHRISGATIF
Rv3316|M.tuberculosis_H37Rv         -----------------------------------MWSWVCHRISGATIF
                                                                       ****: ***:**:**

Mflv_4844|M.gilvum_PYR-GCK          FFLFVHVLDTALVRVSPQAYNEVIETYKTPIVGLMEIGLVAAVLYHALNG
Mvan_1589|M.vanbaalenii_PYR-1       FFLFVHVLDTALVRVSPQAYNEVIETYKTPIVGLMEIGLVAAVLYHALNG
MSMEG_1672|M.smegmatis_MC2_155      FFLFVHVLDTALVRVSPQAYNEVIETYKTPIVGLMEIGLVAAVLFHALNG
TH_2180|M.thermoresistible__bu      FFLFVHVLDTALVRVSPEAYNAVIETYKTPIVGLMEIGLVAAVLFHALNG
MAB_3673|M.abscessus_ATCC_1997      FFLFVHVLDTALVRVSPESYNSVIETYKTPIVGLMELGLVAAVLYHALNG
MMAR_1203|M.marinum_M               FFLFVHVLDTALVRVSPQAYNSVIDTYKTPIVGLMEFGLVIAVSYHALNG
MUL_1367|M.ulcerans_Agy99           FFLFVHVLDTALVRVRPQAYNSVIDTYKTPIVGLMEFGLVIAVSYHALNG
MAV_4297|M.avium_104                FFLFVHVLDAAMLRVSPQTYNAVIHDYQMPIVGVMEYGLIAAVLFHGLNG
MLBr_00699|M.leprae_Br4923          FFLFVHVLDAAMLRVNPQTYNAVLSTYKAPIVGFMEYGLVAAVGFHGLNG
Mb3345|M.bovis_AF2122/97            FFLFVHVLDAAMLRVSPQTYNAVLATYKTPIVGLMEYGLVAAVLFHALNG
Rv3316|M.tuberculosis_H37Rv         FFLFVHVLDAAMLRVSPQTYNAVLATYKTPIVGLMEYGLVAAVLFHALNG
                                    *********:*::** *::** *:  *: ****.** **: ** :*.***

Mflv_4844|M.gilvum_PYR-GCK          IRIILIDFWSEGPRHQRKMLWIIAGIFIVLFTAGLGVIGMHMAERFL---
Mvan_1589|M.vanbaalenii_PYR-1       IRIILIDFWSEGPRHQRKMLWVIAGVFIAVFIAALGVIGMHMAERFL---
MSMEG_1672|M.smegmatis_MC2_155      IRVILIDFWAKGPRYQRQMLAVIAGLFLVIFIAAVGVIGMHMVERFL---
TH_2180|M.thermoresistible__bu      VRVILIDFWSEGPRYQRQMLWVVAAIFIAVLIAAVGMIGMHMAERFL---
MAB_3673|M.abscessus_ATCC_1997      VRVILVDFWSKGPRYQRLMLWIIGAVWFVVMVPAVTRILMHMAERFL---
MMAR_1203|M.marinum_M               IRIILIDFWSEGPRYQRLMLAVVGVAWLLILVPSAVVLGIHMAEHFL---
MUL_1367|M.ulcerans_Agy99           IRIILIDFWSEGPRYQRLMLAVVGVAWLLILVPSAVVLGIHMAEHFL---
MAV_4297|M.avium_104                IRVILIDFWSEGPRHQRLMFWIVGVVFLLLMVPAGVVTVIHMLGHFR---
MLBr_00699|M.leprae_Br4923          IRVILIDFWSEGPRHQRLMLWIISVIFLLLLVPAGVVIGIHMWEHFRMWE
Mb3345|M.bovis_AF2122/97            IRVILIDFWSEGPRYQRLMLWIIGSVFLLLMVPAGVVVGIHMWEHFR---
Rv3316|M.tuberculosis_H37Rv         IRVILIDFWSEGPRYQRLMLWIIGSVFLLLMVPAGVVVGIHMWEHFR---
                                    :*:**:***::***:** *: ::.  :: :: ..     :**  :*    

Mflv_4844|M.gilvum_PYR-GCK          ---
Mvan_1589|M.vanbaalenii_PYR-1       ---
MSMEG_1672|M.smegmatis_MC2_155      ---
TH_2180|M.thermoresistible__bu      ---
MAB_3673|M.abscessus_ATCC_1997      ---
MMAR_1203|M.marinum_M               ---
MUL_1367|M.ulcerans_Agy99           ---
MAV_4297|M.avium_104                ---
MLBr_00699|M.leprae_Br4923          HFR
Mb3345|M.bovis_AF2122/97            ---
Rv3316|M.tuberculosis_H37Rv         ---