For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
aa seq not available
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. thermoresistible (build 8) | TH_1486 | sigB | - | 100% (157) | RNA POLYMERASE SIGMA FACTOR SIGB |
| M. thermoresistible (build 8) | TH_0829 | sigB | 5e-45 | 55.84% (154) | RNA POLYMERASE SIGMA FACTOR SIGB |
| M. thermoresistible (build 8) | TH_0241 | sigF | 1e-06 | 29.93% (147) | ALTERNATE RNA POLYMERASE SIGMA FACTOR SIGF |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | Mb2729 | sigB | 2e-77 | 91.67% (156) | RNA polymerase sigma factor SigB |
| M. gilvum PYR-GCK | Mflv_3948 | - | 3e-79 | 94.23% (156) | RNA polymerase sigma factor SigB |
| M. tuberculosis H37Rv | Rv2710 | sigB | 2e-77 | 91.67% (156) | RNA polymerase sigma factor SigB |
| M. leprae Br4923 | MLBr_01014 | - | 2e-77 | 91.67% (156) | RNA polymerase sigma factor SigB |
| M. abscessus ATCC 19977 | MAB_3028 | - | 3e-77 | 91.67% (156) | RNA polymerase sigma factor SigB |
| M. marinum M | MMAR_2003 | sigB | 9e-78 | 92.95% (156) | RNA polymerase sigma factor SigB |
| M. avium 104 | MAV_3603 | - | 1e-76 | 91.03% (156) | RNA polymerase sigma factor SigB |
| M. smegmatis MC2 155 | MSMEG_2752 | - | 9e-79 | 93.59% (156) | RNA polymerase sigma factor SigB |
| M. ulcerans Agy99 | MUL_3350 | sigB | 2e-78 | 93.59% (156) | RNA polymerase sigma factor SigB |
| M. vanbaalenii PYR-1 | Mvan_2451 | - | 5e-79 | 94.23% (156) | RNA polymerase sigma factor SigB |
CLUSTAL 2.0.9 multiple sequence alignment
MMAR_2003|M.marinum_M MTAQADREGEMAQPIARGIVGRVDSDLDAQSPAADLVRVYLNGIGKTALL
MUL_3350|M.ulcerans_Agy99 ----------MAQPIARGIVGRVDSDLDAQSPAADLVRVYLNGIGKTALL
Mb2729|M.bovis_AF2122/97 ----------MADAPTRATTSRVDSDLDAQSPAADLVRVYLNGIGKTALL
Rv2710|M.tuberculosis_H37Rv ----------MADAPTRATTSRVDSDLDAQSPAADLVRVYLNGIGKTALL
MAV_3603|M.avium_104 ----------MAN----ASTSRFDGDLDAQSPAADLVRVYLNGIGKTALL
MLBr_01014|M.leprae_Br4923 ----------MAE----ATTNRVDSDLDAQSPAADLVRVYLNGIGKTALL
Mflv_3948|M.gilvum_PYR-GCK MNVPPDQEAAMAN----ATTSRFDQDLDAQSPAADLVRVYLNGIGKTALL
Mvan_2451|M.vanbaalenii_PYR-1 MKVPPDQEAAMAN----ATTSRIDQDLDAQSPAADLVRVYLNGIGKTALL
MSMEG_2752|M.smegmatis_MC2_155 ----------MAN----ATTSRVDTDLDAQSPAADLVRVYLNGIGKTALL
TH_1486|M.thermoresistible__bu --------------------------------------------------
MAB_3028|M.abscessus_ATCC_1997 ----------MANATTRPARTTESEDLDAQSPAADLVRVYLNGIGKTALL
MMAR_2003|M.marinum_M NAEGEVELAKRIEAGLYAEHLLATRKRLGDNRKRELAAVVRDGAEARRHL
MUL_3350|M.ulcerans_Agy99 NAEGEVELAKRIEAGLYAEHLLATRKRLGDNRKRELAAVVRDGAEARRHL
Mb2729|M.bovis_AF2122/97 NAAGEVELAKRIEAGLYAEHLLETRKRLGENRKRDLAAVVRDGEAARRHL
Rv2710|M.tuberculosis_H37Rv NAAGEVELAKRIEAGLYAEHLLETRKRLGENRKRDLAAVVRDGEAARRHL
MAV_3603|M.avium_104 NAAGEVELAKRIEAGLYAEHLLETRKRLGENRKRDLEAVVRDGQAARRHL
MLBr_01014|M.leprae_Br4923 NAADEVELAKRIEAGLYAEHLLQTRKRFGEGRKRALAAVARDGAAARRHL
Mflv_3948|M.gilvum_PYR-GCK TAADEVELAKRIEAGLYAQHLLATRKRLGENRKRDLAAVVRDGEAARRHL
Mvan_2451|M.vanbaalenii_PYR-1 NAADEVELAKRIEAGLYAQHLLDTRKRLGENRKRDLAAVVRDGEAARRHL
MSMEG_2752|M.smegmatis_MC2_155 NAADEVELAKRIEAGLYAQHLLDTKKRLGEARKRDLQAVVRDGEAARRHL
TH_1486|M.thermoresistible__bu --------------------------------------------------
MAB_3028|M.abscessus_ATCC_1997 TAEDEVELAKRIEAGLYAQHLLDTKKRLGEARKKDLAVIVREGNAARSHL
MMAR_2003|M.marinum_M LEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFST
MUL_3350|M.ulcerans_Agy99 LEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFST
Mb2729|M.bovis_AF2122/97 LEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFST
Rv2710|M.tuberculosis_H37Rv LEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFST
MAV_3603|M.avium_104 LEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFST
MLBr_01014|M.leprae_Br4923 LEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFST
Mflv_3948|M.gilvum_PYR-GCK LEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFST
Mvan_2451|M.vanbaalenii_PYR-1 LEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFST
MSMEG_2752|M.smegmatis_MC2_155 LEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFST
TH_1486|M.thermoresistible__bu --------------------------------------------------
MAB_3028|M.abscessus_ATCC_1997 LEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFST
MMAR_2003|M.marinum_M YATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREAT
MUL_3350|M.ulcerans_Agy99 YATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREIHQNLGREAT
Mb2729|M.bovis_AF2122/97 YATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGREAT
Rv2710|M.tuberculosis_H37Rv YATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGREAT
MAV_3603|M.avium_104 YATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREAT
MLBr_01014|M.leprae_Br4923 YATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREAT
Mflv_3948|M.gilvum_PYR-GCK YATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREAT
Mvan_2451|M.vanbaalenii_PYR-1 YATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREAT
MSMEG_2752|M.smegmatis_MC2_155 YATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREAT
TH_1486|M.thermoresistible__bu ---------------------------VEQVNKLARIKRELHQTLGREPT
MAB_3028|M.abscessus_ATCC_1997 YATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQRLGREAS
*************:** ****.:
MMAR_2003|M.marinum_M DEELAAESGIPVEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAM
MUL_3350|M.ulcerans_Agy99 DEELAAESGIPVEKINDLLEHSRDPVSLDMPVGSDEEAPLGDFIEDAEAM
Mb2729|M.bovis_AF2122/97 DEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAM
Rv2710|M.tuberculosis_H37Rv DEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAM
MAV_3603|M.avium_104 DEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAM
MLBr_01014|M.leprae_Br4923 DEELAAESGIPIEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAM
Mflv_3948|M.gilvum_PYR-GCK DEELAEESGIPVEKINDLLEHSRDPVSLDMPVGSDEEAPLGDFIEDAEAM
Mvan_2451|M.vanbaalenii_PYR-1 DEELAAESGIPVEKITDLLEHSRDPVSLDMPVGSDEEAPLGDFIEDAEAM
MSMEG_2752|M.smegmatis_MC2_155 DEELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAM
TH_1486|M.thermoresistible__bu DEELAEESGIPVEKIADLLDHSRDPVSLDMPVGSDEEAPLGDFIEDAEAM
MAB_3028|M.abscessus_ATCC_1997 DEELAEESGIPVEKIGDLLDHSRDPVSLDMPVGTDEEAPLGDFIEDTEAM
***** *****::** ***:*************::***********:***
MMAR_2003|M.marinum_M SAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKL
MUL_3350|M.ulcerans_Agy99 SAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKL
Mb2729|M.bovis_AF2122/97 SAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKL
Rv2710|M.tuberculosis_H37Rv SAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKL
MAV_3603|M.avium_104 SAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKL
MLBr_01014|M.leprae_Br4923 SAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKL
Mflv_3948|M.gilvum_PYR-GCK SAENAVISELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKL
Mvan_2451|M.vanbaalenii_PYR-1 SAENAVISELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKL
MSMEG_2752|M.smegmatis_MC2_155 SAENAVISELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKL
TH_1486|M.thermoresistible__bu SAENAVIAELLHTDIRHVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKL
MAB_3028|M.abscessus_ATCC_1997 SAENAVIAELLHSDVRSVLATLDEREQQVIRLRYGLDDGQARTLDQIGKL
*******:****:*:* *********:******:******.*********
MMAR_2003|M.marinum_M FGLSRERVRQIERDVMCKLRHGERADRLRSYAS
MUL_3350|M.ulcerans_Agy99 FGLSRERVRQIERDVMCKLRHGERADRLRSYAS
Mb2729|M.bovis_AF2122/97 FGLSRERVRQIERDVMSKLRHGERADRLRSYAS
Rv2710|M.tuberculosis_H37Rv FGLSRERVRQIERDVMSKLRHGERADRLRSYAS
MAV_3603|M.avium_104 FGLSRERVRQIERDVMSKLRNGERADRLRSYAS
MLBr_01014|M.leprae_Br4923 FGLSRERVRQIERDVMCKLRNGERADRLRSYAS
Mflv_3948|M.gilvum_PYR-GCK FGLSRERVRQIEREVMAKLRNGDRADRLRSYAS
Mvan_2451|M.vanbaalenii_PYR-1 FGLSRERVRQIEREVMAKLRNGERADRLRSYAS
MSMEG_2752|M.smegmatis_MC2_155 FGLSRERVRQIEREVMAKLRNGERADRLRSYAS
TH_1486|M.thermoresistible__bu FGLSRERVRQIEREVMAKLRHGERADRLRSYAS
MAB_3028|M.abscessus_ATCC_1997 FGLSRERVRQIEREVMAKLRHGDRAERLRSYAS
*************:**.***:*:**:*******