For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
aa seq not available
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. thermoresistible (build 8) | TH_0808 | nadB | - | 100% (407) | L-aspartate oxidase |
| M. thermoresistible (build 8) | TH_2182 | sdhA | 2e-52 | 36.24% (425) | PROBABLE SUCCINATE DEHYDROGENASE (FLAVOPROTEIN SUBUNIT) SDHA |
| M. thermoresistible (build 8) | TH_4672 | - | 2e-49 | 36.55% (435) | PUTATIVE succinate dehydrogenase subunit A |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | Mb1621 | nadB | 1e-159 | 72.19% (392) | L-aspartate oxidase |
| M. gilvum PYR-GCK | Mflv_3618 | - | 1e-160 | 70.54% (404) | L-aspartate oxidase |
| M. tuberculosis H37Rv | Rv1595 | nadB | 1e-159 | 72.19% (392) | L-aspartate oxidase |
| M. leprae Br4923 | MLBr_01226 | nadB | 1e-149 | 67.51% (394) | L-aspartate oxidase |
| M. abscessus ATCC 19977 | MAB_2673c | - | 1e-148 | 67.60% (392) | L-aspartate oxidase |
| M. marinum M | MMAR_2392 | nadB | 1e-160 | 70.13% (395) | l-aspartate oxidase NadB |
| M. avium 104 | MAV_3190 | nadB | 1e-158 | 71.28% (397) | L-aspartate oxidase |
| M. smegmatis MC2 155 | MSMEG_3200 | nadB | 1e-163 | 72.35% (405) | L-aspartate oxidase |
| M. ulcerans Agy99 | MUL_1569 | nadB | 1e-159 | 70.13% (395) | L-aspartate oxidase |
| M. vanbaalenii PYR-1 | Mvan_2799 | - | 1e-159 | 72.41% (395) | L-aspartate oxidase |
CLUSTAL 2.0.9 multiple sequence alignment
TH_0808|M.thermoresistible__bu MIHR--FGCGGSGSVAWQQRADVVVIGTGVAGLVAARAAGRAGRRVVVLS
MSMEG_3200|M.smegmatis_MC2_155 MTGAGTFACG--TSAYWQQRTDVVVIGTGVAGLVAALAAHRAGRRVTVLS
Mflv_3618|M.gilvum_PYR-GCK -----MTGCG--GAGGWRRRADVVIVGTGVAGLAAALAAHRRGLRVVLLS
Mvan_2799|M.vanbaalenii_PYR-1 ---------------MWRQRADVVIVGTGVAGLAAALAAHRRGRRVVLLS
Mb1621|M.bovis_AF2122/97 -----------MAGPAWRDAADVVVIGTGVAGLAAALAADRAGRSVVVLS
Rv1595|M.tuberculosis_H37Rv -----------MAGPAWRDAADVVVIGTGVAGLAAALAADRAGRSVVVLS
MMAR_2392|M.marinum_M ----------MRTSPTWRDAADVVVIGTGVAGLAAALSAHRAGRSVVLLN
MUL_1569|M.ulcerans_Agy99 ----------MRTSPTWRDAADVVVIGTGVAGLAAALSAHRAGRSVVLLN
MLBr_01226|M.leprae_Br4923 ----------MMAVPDWKHAADVVVIGTGVAGLAAALAAHRAGRNVVVLT
MAV_3190|M.avium_104 ----------MIARPQWTHSADVVVIGTGVAGLAAALAAHRADRSVVVLS
MAB_2673c|M.abscessus_ATCC_199 --------MTMPAGTTWRTDADVVVVGAGVAGLAAALAVHRRGRKVVVLS
* :***::*:*****.** :. * . *.:*.
TH_0808|M.thermoresistible__bu KT-DDIGQTATRYAQGGIAVVLPD----TDDSVDVHVADTLAAGGGLCDP
MSMEG_3200|M.smegmatis_MC2_155 K----VSETATFYAQGGIAVVLPAGVGSADDTIEAHVADTLAAGGGLCDA
Mflv_3618|M.gilvum_PYR-GCK K----AAETATFYAQGGIAVVLPDVLRDGGDSVDAHVADTLAAGAGLCDP
Mvan_2799|M.vanbaalenii_PYR-1 K----ASETATFYAQGGIAVVLPDALREGGDSVDAHVADTLAAGAGLCDP
Mb1621|M.bovis_AF2122/97 KAAQTH-VTATHYAQGGIAVVLPD----NDDSVDAHVADTLAAGAGLCDP
Rv1595|M.tuberculosis_H37Rv KAAQTH-VTATHYAQGGIAVVLPD----NDDSVDAHVADTLAAGAGLCDP
MMAR_2392|M.marinum_M KAADTVGATATHYAQGGIAVVLPG----SDDSVDAHVADTVTAGAGLCDL
MUL_1569|M.ulcerans_Agy99 KATDTVGATATHYAQGGIAVVLPG----GDDSVDAHVADTVTAGAGLCDL
MLBr_01226|M.leprae_Br4923 KADQRRGETATHYAQGGIAVVLPG----SDDSVDAHASDTLAAGAGMCNL
MAV_3190|M.avium_104 KADQARGATATHYAQGGIAVVLPH----NDDSVEAHVADTVVAGAGLCDP
MAB_2673c|M.abscessus_ATCC_199 K----VGATATHFAQGGIAVVLPD----SQDSIEAHVLDTLSAGAGLCDA
* *** :********** *:::.*. **: **.*:*:
TH_0808|M.thermoresistible__bu RIVRSIVADGYAAVCDLIGAGARFDRAASGGWARTREGGHTRRRVIHAGG
MSMEG_3200|M.smegmatis_MC2_155 EAVRSIVADGAKAITDLVADGALFDESAPGRWALTREGGHTRRRIIHAGG
Mflv_3618|M.gilvum_PYR-GCK AAVRSIVADGFDAVTELVAAGARFDESEPGRWALTREGGHSRRRIIHAGG
Mvan_2799|M.vanbaalenii_PYR-1 QSVRSIVADGYRAVAELVSAGARFDETVPGRWALTREGGHTRRRIIHSGG
Mb1621|M.bovis_AF2122/97 DAVYSIVADGYRAVTDLVGAGARLDESVPGRWALTREGGHSRRRIVHAGG
Rv1595|M.tuberculosis_H37Rv DAVYSIVADGYRAVTDLVGAGARLDESVPGRWALTREGGHSRRRIVHAGG
MMAR_2392|M.marinum_M EAVYSIVADGFRAVTDLVGDGAKFDETSTGRWALTREGGHSRRRIVHAGG
MUL_1569|M.ulcerans_Agy99 EAVYSIVADGFRAVTDLVGDGAKFDETSTGRWALTREGGHSRRRIVHAGG
MLBr_01226|M.leprae_Br4923 DTVYSIVAEGYHAVTELVGYGARFDESIPGRWAVTCEGGHSRRRIVHAGG
MAV_3190|M.avium_104 QAVYSIVADGYAAVSELVGDGARFDESAPGQWALTREGGHSRRRIVHAGG
MAB_2673c|M.abscessus_ATCC_199 EAVRSIVSDGYRAVRDLVADGARFDESRSGQWALTREGGHSARRIIHAGG
* ***::* *: :*:. ** :*.: .* ** * ****: **::*:**
TH_0808|M.thermoresistible__bu DATGVEVQRALEAAAAGLDIRCRHQAVQVLVRD----GAVAGVLVRNDDG
MSMEG_3200|M.smegmatis_MC2_155 DATGAEVQRTLNHAAAHLDIRHNHVALRILQDE----AGVTGVLVHNDDG
Mflv_3618|M.gilvum_PYR-GCK DATGAEVQKALDLAAASLDIRRNHVALDLILDG----GAIAGVTVLSDDG
Mvan_2799|M.vanbaalenii_PYR-1 DATGAEVQRALDHAAATLDIRRNHVALDLLVDD----GAVTGVTVLSGDG
Mb1621|M.bovis_AF2122/97 DATGAEVQRALQDAAGMLDIRTGHVALRVLHDG----TAVTGLLVVRPDG
Rv1595|M.tuberculosis_H37Rv DATGAEVQRALQDAAGMLDIRTGHVALRVLHDG----TAVTGLLVVRPDG
MMAR_2392|M.marinum_M DATGAEVQRALDQAAGLLDIRASHVALRILHDD----TAVTGVLVLNPNG
MUL_1569|M.ulcerans_Agy99 DATGAEVQRALDQAAGLLDIRASHVALRILHDD----TAVTGVLVLNPNG
MLBr_01226|M.leprae_Br4923 DATGAEVQRALDHAADVLDIRTSHLALRVLHDG----TVVNGVSVLNPNG
MAV_3190|M.avium_104 DATGAEVQRALDHAARMLDIRTAHVALRVLHDGSMGDEAVTGVLVGNPHG
MAB_2673c|M.abscessus_ATCC_199 DATGAEVQRALDHAAAMLDVRRSHVVHDILVGP----EGVGGVLVGNSDG
****.***::*: ** **:* * . :: : *: * .*
TH_0808|M.thermoresistible__bu LGVLHTPAVVIATGGLGQLYTATTNPDGSTGDGVALALTAGAAVSDLEFI
MSMEG_3200|M.smegmatis_MC2_155 PGILHAPSVVLATGGLGHLYAATTNPVGSTGDGIALALWAGVAVSDIEFV
Mflv_3618|M.gilvum_PYR-GCK VGAVYAPSVILATGGLGHLYSATTNPDGSTGDGVALAIWAGLPVGDLEFI
Mvan_2799|M.vanbaalenii_PYR-1 LGVVYAPSVILATGGSGHLYSATTNPDGSTGDGVALAMWAGLPVSDLEFI
Mb1621|M.bovis_AF2122/97 CGIISAPSVILATGGLGHLYSATTNPAGSTGDGIALGLWAGVAVSDLEFI
Rv1595|M.tuberculosis_H37Rv CGIISAPSVILATGGLGHLYSATTNPAGSTGDGIALGLWAGVAVSDLEFI
MMAR_2392|M.marinum_M VGIISAPSVILATGGLGQLYSATTNPDGATGDGIALALWAGVTVSDLEFI
MUL_1569|M.ulcerans_Agy99 VGIISAPSVILATGGLGQLYSATTNPDGATGDGIALALWAGVTVSDLEFI
MLBr_01226|M.leprae_Br4923 WGIVSAPSVILASGGLGHLYGATTNPEGSTGDGIALALWAGVAVSDLEFI
MAV_3190|M.avium_104 YGIISAPSVILASGGLGHLYGATTNPEGSTGDGIALGLWAGVAVSDLEFI
MAB_2673c|M.abscessus_ATCC_199 IGVIHAGAVVLATGGLGHLYSATTNPEGSTGDGIALALRAGVSVADIEFI
* : : :*::*:** *:** ***** *:****:**.: ** .*.*:**:
TH_0808|M.thermoresistible__bu QFHPTMLFDGASG--GRRPLITEAVRGEGATLVDARGEPVMAGIHPMGDL
MSMEG_3200|M.smegmatis_MC2_155 QFHPTMLFGAAAG--GRRPLITEALRGEGAVLIDAQGHPVTAGVHPMGDL
Mflv_3618|M.gilvum_PYR-GCK QFHPTMLYAGAGI--GRRPLITEALRGEGAKLVDRQGRSVTDGVHPMGDL
Mvan_2799|M.vanbaalenii_PYR-1 QFHPTMLYAGHGG--GRRPLITEALRGEGAKLIDRQGESVTDGVHPMGDL
Mb1621|M.bovis_AF2122/97 QFHPTMLFAGRAG--GRRPLITEAIRGEGAILVDRQGNSITAGVHPMGDL
Rv1595|M.tuberculosis_H37Rv QFHPTMLFAGRAG--GRRPLITEAIRGEGAILVDRQGNSITAGVHPMGDL
MMAR_2392|M.marinum_M QFHPTMLFDGSSG--GRRPLITEAIRGEGAILLDRQGRSITAGVHPLGDL
MUL_1569|M.ulcerans_Agy99 QFHPTMLFYGSSG--GRRPLITEAIRGEGAILLDRQGRSITAGVHPLGDL
MLBr_01226|M.leprae_Br4923 QFHPTMLFAAGTGTGGRRPLVTEAIRGEGAILLDSKGNSVTSGVHPLGDL
MAV_3190|M.avium_104 QFHPTMLFAPGAG-GGRRPLVTEAIRGEGAKLIDSQGDSVTAGVHPMGDL
MAB_2673c|M.abscessus_ATCC_199 QFHPTMLHTPDAA--GCRPLISEAVRGEGAVLVDARGDSVTAGVHPQGDL
*******. * ***::**:***** *:* :* .: *:** ***
TH_0808|M.thermoresistible__bu APRDVVAAAIEARLAATGDPCVFLDARRVADFPRRFPTVTAVCHAAGCDP
MSMEG_3200|M.smegmatis_MC2_155 APRDVVAAAINARLAATGDPCVYLDARGVAGVADRFPTVTAACLAAGIDP
Mflv_3618|M.gilvum_PYR-GCK APRDVVAAAIEARLSETGDECVYLDARGIADFPTRFPTVTASCLEAGIDP
Mvan_2799|M.vanbaalenii_PYR-1 APRDVVAAAIEARLSEAGDPCVYLDATGVADFERRFPTVNASCLQAGIDA
Mb1621|M.bovis_AF2122/97 APRDVVAAAIDARLKATGDPCVYLDARGIEGFASRFPTVTASCRAAGIDP
Rv1595|M.tuberculosis_H37Rv APRDVVAAAIDARLKATGDPCVYLDARGIEGFASRFPTVTASCRAAGIDP
MMAR_2392|M.marinum_M APRDVVAAAIDARMKANGDPCAYLDARSIKGFESRFPTVTASCRAAGIDP
MUL_1569|M.ulcerans_Agy99 APRDVVAAAIDARMKANGDPCAYLDARSIKGFESRFPTVTASCRAAGIDP
MLBr_01226|M.leprae_Br4923 APRDVVAAAIDARLKATGDSCVYLDARGIDGFASRFPTVTAACRTVGIDP
MAV_3190|M.avium_104 APRDVVAAAIDARLKATGDACVYLDARHIFDFADRFPTVTAACRAAGIDP
MAB_2673c|M.abscessus_ATCC_199 APRDVVAGAIARRLRESGDQCVYLDARAIGNFAIRFPTITAACAAAGIDP
*******.** *: ** *.:*** : .. ****:.* * .* *.
TH_0808|M.thermoresistible__bu VRQPIPVVPGAHYSCGGIDTDDQGRSTVPGLFAAGECARTGMHGANRLAS
MSMEG_3200|M.smegmatis_MC2_155 AREPIPVVPGAHYSCGGVVTDVYGRTALPGLFAAGEVARTGMHGANRLAS
Mflv_3618|M.gilvum_PYR-GCK VRQPIPVVPGAHYSCGGVVTDVDGRTGISGLFAAGEVARTGMHGANRLAS
Mvan_2799|M.vanbaalenii_PYR-1 TRQPIPVVPGAHYSCGGVVTDVHGRTGVAGLFAAGEVARTGMHGANRLAS
Mb1621|M.bovis_AF2122/97 VRQPIPVVPGAHYSCGGIVTDVYGQTELLGLYAAGEVARTGLHGANRLAS
Rv1595|M.tuberculosis_H37Rv VRQPIPVVPGAHYSCGGIVTDVYGQTELLGLYAAGEVARTGLHGANRLAS
MMAR_2392|M.marinum_M VRQPIPVVPGAHYSCGGVITDVYGNTELPGLFAAGEVARTGMHGANRLAS
MUL_1569|M.ulcerans_Agy99 VRQPIPVVPGAHYSCGGVITDVYGNTELPGLFAAGEVARTGMHGANRLAS
MLBr_01226|M.leprae_Br4923 AREPIPVVPGAHYSCGGIVTDAYGQTELAGLFAAGEVARTGMHGANRLAS
MAV_3190|M.avium_104 VRQPIPVVPGAHYSCGGVVTDVYGRTELPGLFAAGEVARTGLHGANRLAS
MAB_2673c|M.abscessus_ATCC_199 SVQLIPVVPGAHYSCGGVVTDPYGHTEVAGLFAAGEVARTGMHGANRLAS
: *************: ** *.: : **:**** ****:********
TH_0808|M.thermoresistible__bu NSLLEGLVMGX---------------------XAAPRSAR----------
MSMEG_3200|M.smegmatis_MC2_155 NSLLEGLVVGSRAGRAAAAHAEQAG----SVRAVVPQQVRRDAVDRQVLQ
Mflv_3618|M.gilvum_PYR-GCK NSLLEGLVVGRRAGTAAAEHATVAG----PTRIVDPGPQVRPALPRAELQ
Mvan_2799|M.vanbaalenii_PYR-1 NSLLEGLVVGGRAGVAAAEHAEQTG----PARVVEAAVPTRPALPRAELQ
Mb1621|M.bovis_AF2122/97 NSLLEGLVVGGRAGKAAAAHAAAAGRSRATSSATWPEPISYTALDRGDLQ
Rv1595|M.tuberculosis_H37Rv NSLLEGLVVGGRAGKAAAAHAAAAGRSRATSSATWPEPISYTALDRGDLQ
MMAR_2392|M.marinum_M NSLLEGLVVGGRAGKGAAAHAAAAG----LAHATMPEPIAHTAPRRDDLQ
MUL_1569|M.ulcerans_Agy99 NSLLEGLVVGGRAGKGAAAHAAAAG----LAHATMPEPIAHTAPRRDDLQ
MLBr_01226|M.leprae_Br4923 NSLLEGLVVGGRAGRAAAAHAAAAG----RAYVSKLEPVTHHALKRRELQ
MAV_3190|M.avium_104 NSLLEGLVVGGRAGRAAAAHAAEAG----RPRALAPEPVAHTAPPRAELQ
MAB_2673c|M.abscessus_ATCC_199 NSLLEGLVVGRRAGEAAARIADRAG-------VVDERDPAPPRLDRRRLQ
********:*
TH_0808|M.thermoresistible__bu --------------------------------------------------
MSMEG_3200|M.smegmatis_MC2_155 AAMSTHASVVRDAQGLHRLAETLDAARAVVPS----DRASFEDAALTSVA
Mflv_3618|M.gilvum_PYR-GCK AAMTRYASVVRTADGLHRIRDLVGTAPVRNLR----NRNDFEDAALTAVA
Mvan_2799|M.vanbaalenii_PYR-1 RAMTRHASVVRSGEGLRELTEQLESATPRALR----SRSDFEDAALTAVA
Mb1621|M.bovis_AF2122/97 RAMSRDASMYRAAAGLHRLCDSLSGAQVRDVA----CRRDFEDVALTLVA
Rv1595|M.tuberculosis_H37Rv RAMSRDASMYRAAAGLHRLCDSLSGAQVRDVA----CRRDFEDVALTLVA
MMAR_2392|M.marinum_M RAMSRDASVVRDAAGLHRLAEMLDG-PTRGIA----DRNDFEDVALALAA
MUL_1569|M.ulcerans_Agy99 RAMSRDASVVRDAAGLHRLAEMLDG-PTRGIA----DRNDFEDVALALAA
MLBr_01226|M.leprae_Br4923 RVMSRDAAVMRNAAGLQRLSDTLAEAPIRHVT----GRRDFEDVALTLTA
MAV_3190|M.avium_104 AAMSRDASVVRDAAGLTRLSATLSQAPARSIG----GRRDFEDVALAVAA
MAB_2673c|M.abscessus_ATCC_199 SAMTRWASVLRDADGLGLLEAELRCGTVSPVDPARMTPRDVEDAALTLTA
TH_0808|M.thermoresistible__bu --------------------------------------------------
MSMEG_3200|M.smegmatis_MC2_155 RAVVRAATARTESRGSHHRGDFPDTDPTQEVSMTVRIHDGDVAVDIPTAV
Mflv_3618|M.gilvum_PYR-GCK SAVADAALARTETRGCHHRSDHPLTDPAQAVSIASG--LAPATVGC----
Mvan_2799|M.vanbaalenii_PYR-1 GAVTAAASARTESRGCHHRSDFPEPDPAQAVSTVFGADHAPVAVGCR---
Mb1621|M.bovis_AF2122/97 QSVTAAALARTESRGCHHRAEYPCTVPEQARSIVVRGADDANAVCVQALV
Rv1595|M.tuberculosis_H37Rv QSVTAAALARTESRGCHHRAEYPCTVPEQARSIVVRGADDANAVCVQALV
MMAR_2392|M.marinum_M RVVGAGALARNESRGCHHRAEYPDVVPEQGRGIVVRLAGDQDTVCVEALA
MUL_1569|M.ulcerans_Agy99 RVVGAGALARNESRGCHHRAEYPDVVPEQGRGIVVRLAGDQDTVCVEALA
MLBr_01226|M.leprae_Br4923 RAVAAAALARNESRGCHHCTEYPDTAPEHARSTVIRLADDQNLVRAEALA
MAV_3190|M.avium_104 RAVAAAALARTESRGCHHREEHPQAAPEQARSNLLRLADDQNSVLVQALA
MAB_2673c|M.abscessus_ATCC_199 QAVATAAAARTESRGCHARSDWPRTDSHFAVSLPVRRDADGCEVALPSGV
TH_0808|M.thermoresistible__bu ---
MSMEG_3200|M.smegmatis_MC2_155 C--
Mflv_3618|M.gilvum_PYR-GCK ---
Mvan_2799|M.vanbaalenii_PYR-1 ---
Mb1621|M.bovis_AF2122/97 AVC
Rv1595|M.tuberculosis_H37Rv AVC
MMAR_2392|M.marinum_M AVG
MUL_1569|M.ulcerans_Agy99 AVG
MLBr_01226|M.leprae_Br4923 TVG
MAV_3190|M.avium_104 AVV
MAB_2673c|M.abscessus_ATCC_199 PC-