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M. thermoresistible (build 8) TH_0665 (sigH)

annotation: ALTERNATIVE RNA POLYMERASE SIGMA-E FACTOR (SIGMA-24) SIGH (RPOE)
coordinates: 1429646 - 1430284
length: 213

aa seq not available

Operon Prediction Model: Genebank

Paralogs

species id gene e-value identity (len) annotation
M. thermoresistible (build 8) TH_0665 sigH - 100% (213) ALTERNATIVE RNA POLYMERASE SIGMA-E FACTOR (SIGMA-24) SIGH (RPOE)
M. thermoresistible (build 8) TH_4436 - 3e-44 50.56% (180) PUTATIVE RNA polymerase, sigma-24 subunit, ECF subfamily
M. thermoresistible (build 8) TH_0545 sigE 6e-23 31.84% (201) ALTERNATIVE RNA POLYMERASE SIGMA FACTOR SIGE

Closest Orthologs (e-value cutoff: 1e-4)

species id gene e-value identity (len) annotation
M. bovis AF2122 / 97 Mb3250c sigH 1e-97 84.76% (210) RNA polymerase sigma factor RpoE
M. gilvum PYR-GCK Mflv_4689 - 1e-97 87.00% (200) ECF subfamily RNA polymerase sigma-24 factor
M. tuberculosis H37Rv Rv3223c sigH 1e-97 84.76% (210) RNA polymerase sigma factor RpoE
M. leprae Br4923 MLBr_01076 sigE 2e-20 31.95% (169) RNA polymerase sigma factor SigE
M. abscessus ATCC 19977 MAB_3543c - 2e-87 80.00% (190) RNA polymerase sigma-E factor
M. marinum M MMAR_1334 sigH 3e-98 83.03% (218) alternative RNA polymerase sigma-E factor (sigma- 24) SigH
M. avium 104 MAV_4171 - 1e-96 88.50% (200) RNA polymerase sigma factor RpoE
M. smegmatis MC2 155 MSMEG_1914 - 1e-100 85.12% (215) RNA polymerase sigma-70 factor, family protein
M. ulcerans Agy99 MUL_2545 sigH 2e-97 82.57% (218) RNA polymerase sigma factor RpoE
M. vanbaalenii PYR-1 Mvan_1778 - 2e-98 84.69% (209) ECF subfamily RNA polymerase sigma-24 factor

CLUSTAL 2.0.9 multiple sequence alignment


Mflv_4689|M.gilvum_PYR-GCK          --------MVPVMAMKAPSRSVFVLDVIGGAATEGTVFPTMTD----TNG
Mvan_1778|M.vanbaalenii_PYR-1       ------------MAMEAPSRSVHVLDVIGGAATEGTVFPTMTD----ITG
MSMEG_1914|M.smegmatis_MC2_155      ------------------------------------MFPTMTD----VDR
TH_0665|M.thermoresistible__bu      ----------------------------------------MTD----IEG
Mb3250c|M.bovis_AF2122/97           ----------------------------------------MAD----IDG
Rv3223c|M.tuberculosis_H37Rv        ----------------------------------------MAD----IDG
MMAR_1334|M.marinum_M               -MSTSTSLLGEERLGRFPASPASVATLSGGTSTEGTVFIKMAD----IDG
MUL_2545|M.ulcerans_Agy99           ----------------------------------------MAD----IDG
MAV_4171|M.avium_104                MVSTATSLLGEEQLAGFLASPGALSVLSGDTAAEGTGFIEMADSPDGPDG
MAB_3543c|M.abscessus_ATCC_199      --------------MACLERPMSVPIRMVGVATERTAVTSMDS-------
MLBr_01076|M.leprae_Br4923          -MGDGIGMEREGRWTGNTQCPLRVVPGDESPTLDGRASPEDLIITNLLSP
                                                                                      

Mflv_4689|M.gilvum_PYR-GCK          LAASPAPADAG------EAREETDAELTARFERDAIPLLDQLYGG-----
Mvan_1778|M.vanbaalenii_PYR-1       SAAEATLDGEA------PAREETDAELTARFERDAIPLLDQLYGG-----
MSMEG_1914|M.smegmatis_MC2_155      VEPETPPE-----------REETDAELTARFERDAIPLLDQLYGG-----
TH_0665|M.thermoresistible__bu      TTP--------------IRSEESDAELTARFERDAIPLLDQLYGG-----
Mb3250c|M.bovis_AF2122/97           VTGSAGLQP--------GPSEETDEELTARFERDAIPLLDQLYGG-----
Rv3223c|M.tuberculosis_H37Rv        VTGSAGLQP--------GPSEETDEELTARFERDAIPLLDQLYGG-----
MMAR_1334|M.marinum_M               VTLAEAPDP--------EPPEETDEQLTARFERDAIPLLDQLYGG-----
MUL_2545|M.ulcerans_Agy99           VTLAEAPDP--------EPPEETDEQLTACFERDAIPLLDQLYGG-----
MAV_4171|M.avium_104                VTSPEVPEAHAEPAAHEETREETDAELTARFERDAIPLLDQLYGG-----
MAB_3543c|M.abscessus_ATCC_199      --AAELPG---------LVHVETEAERVARFERDALPLLDQLYGA-----
MLBr_01076|M.leprae_Br4923          TIMSHPPPSRDDDWVEPFDALQGTAVFDATGDKATMPSWEELVRQHAARV
                                                         :      *  :: ::*  ::*        

Mflv_4689|M.gilvum_PYR-GCK          ---ALRMTRNPADAEDLLQETMVKAYSGFRSFREGTNLKAWLYRILTNTY
Mvan_1778|M.vanbaalenii_PYR-1       ---ALRMTRNPADAEDLLQETMVKAYSGFRSFREGTNLKAWLYRILTNTY
MSMEG_1914|M.smegmatis_MC2_155      ---ALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLYRILTNTY
TH_0665|M.thermoresistible__bu      ---ALRMTRNPADAEDLLQETMVKAYQGFRSFREGTNLKAWLYRILTNTY
Mb3250c|M.bovis_AF2122/97           ---ALRMTRNPADAEDLLQETMVKAYAGFRSFRHGTNLKAWLYRILTNTY
Rv3223c|M.tuberculosis_H37Rv        ---ALRMTRNPADAEDLLQETMVKAYAGFRSFRHGTNLKAWLYRILTNTY
MMAR_1334|M.marinum_M               ---ALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLYRILTNTY
MUL_2545|M.ulcerans_Agy99           ---ALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLYRILTNTY
MAV_4171|M.avium_104                ---ALRMTRNPADAEDLLQETMVKAYAGFRSFRAGTNLKAWLYRILTNTY
MAB_3543c|M.abscessus_ATCC_199      ---ALRMTRNPADAEDLVQETMVKAYAGFGTFKEGTNLKAWLYRILTNTY
MLBr_01076|M.leprae_Br4923          YWLAYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGT-FEGWLHRITTNLF
                                       * *:: *  ***** ***:::.: .. .:: ** ::.**:** ** :

Mflv_4689|M.gilvum_PYR-GCK          INSYRKKQRQPAEYPTEEITDWQLAANAEHTSTGLRSAEVEALELLPDSE
Mvan_1778|M.vanbaalenii_PYR-1       INSYRKKQRQPAEYPTEEITDWQLAANAEHSSTGLRSAEVEALELLPDNE
MSMEG_1914|M.smegmatis_MC2_155      INSYRKKQRQPSEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTE
TH_0665|M.thermoresistible__bu      INNYRKRQRQPAVYPTEEFTDWQLASTAEHSSTGLRSAEVEALEALPDTE
Mb3250c|M.bovis_AF2122/97           INSYRKKQRQPAEYPTEQITDWQLASNAEHSSTGLRSAEVEALEALPDTE
Rv3223c|M.tuberculosis_H37Rv        INSYRKKQRQPAEYPTEQITDWQLASNAEHSSTGLRSAEVEALEALPDTE
MMAR_1334|M.marinum_M               INSYRKKQRQPAEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTE
MUL_2545|M.ulcerans_Agy99           INSYRKKQRQPAEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTE
MAV_4171|M.avium_104                INSYRKKQRQPAEYPTEEITDWQLASNAEHSSTGLRSAEVEALESLPDSE
MAB_3543c|M.abscessus_ATCC_199      INIYRKKQRQPAEYPTEEITDWQLAANAEHTSTGLRSAEIEALDGLPDDE
MLBr_01076|M.leprae_Br4923          LDMVRRRAR---------IRMDALPDDYDRVPADEPNPEQIYHDSRLGPD
                                    ::  *:: *         :    *.   :: .:.  ..*    :   . :

Mflv_4689|M.gilvum_PYR-GCK          IKEALQALPEDFRMAVYYADVEGFPYKEIAEIMETPIGTVMSRLHRGRRQ
Mvan_1778|M.vanbaalenii_PYR-1       IKEALQALPDEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQ
MSMEG_1914|M.smegmatis_MC2_155      IKAALQALPEEFRMAVYYADVEGFPYKEIAEIMETPIGTVMSRLHRGRRQ
TH_0665|M.thermoresistible__bu      IKAALQELPEDFRIAVYLADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQ
Mb3250c|M.bovis_AF2122/97           IKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQ
Rv3223c|M.tuberculosis_H37Rv        IKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQ
MMAR_1334|M.marinum_M               IKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQ
MUL_2545|M.ulcerans_Agy99           IKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQ
MAV_4171|M.avium_104                IKDALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQ
MAB_3543c|M.abscessus_ATCC_199      IKEALNKLPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQ
MLBr_01076|M.leprae_Br4923          LQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQA
                                    :: **: ** :** **  .*:**:.*:**.  : . :*** **:****: 

Mflv_4689|M.gilvum_PYR-GCK          LRELLAGVARDRGFIRGEQLEAPEEVTS
Mvan_1778|M.vanbaalenii_PYR-1       LRELLAGVARDRGFIRGEQVDAPEEVTS
MSMEG_1914|M.smegmatis_MC2_155      LRDLLAGVARDRGFIRGPQLGEPEEVTS
TH_0665|M.thermoresistible__bu      LRSLLADVARERGIIRDQQAGTPEEVSS
Mb3250c|M.bovis_AF2122/97           LRGLLADVARDRGFARGEQAH--EGVSS
Rv3223c|M.tuberculosis_H37Rv        LRGLLADVARDRGFARGEQAH--EGVSS
MMAR_1334|M.marinum_M               LRTLLADVAKERGFVRGEQAH--QEVSS
MUL_2545|M.ulcerans_Agy99           LRTLLADVAKERGFVRGEQAH--QEVSS
MAV_4171|M.avium_104                LRGLLADVAKERGFNRGQQTH--EEVSS
MAB_3543c|M.abscessus_ATCC_199      LRDLLSEVAKDRGFLRNNELA--EGRA-
MLBr_01076|M.leprae_Br4923          LRDYLLTAHPRDGATTDATHVKSA----
                                    **  *  .    *   .

species	id	gene	e-value	identity (len)	annotation
M. thermoresistible (build 8)	TH_0665	sigH	-	100% (213)	ALTERNATIVE RNA POLYMERASE SIGMA-E FACTOR (SIGMA-24) SIGH (RPOE)
M. thermoresistible (build 8)	TH_4436	-	3e-44	50.56% (180)	PUTATIVE RNA polymerase, sigma-24 subunit, ECF subfamily
M. thermoresistible (build 8)	TH_0545	sigE	6e-23	31.84% (201)	ALTERNATIVE RNA POLYMERASE SIGMA FACTOR SIGE