For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
SAHCQVTGRKPGFGNTVSHSHRRSRRRWSPNIQQRTYYLPSEGRRIRLRVSTKGIKVIDRDGIEAVVARL RRQGQRI*
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. tuberculosis H37Rv | Rv2058c | rpmB | - | 100% (78) | 50S ribosomal protein L28 |
| M. tuberculosis H37Rv | Rv0105c | rpmB | 5e-24 | 73.02% (63) | 50S ribosomal protein L28 |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | Mb2084c | rpmB | 1e-41 | 100.00% (78) | 50S ribosomal protein L28 |
| M. gilvum PYR-GCK | Mflv_1312 | - | 3e-35 | 82.05% (78) | ribosomal protein L28 |
| M. leprae Br4923 | - | - | - | - | - |
| M. abscessus ATCC 19977 | MAB_0334c | rpmB.2 | 2e-35 | 85.71% (77) | 50S ribosomal protein L28-2 |
| M. marinum M | MMAR_0292 | rpmB2 | 5e-33 | 82.05% (78) | 50S ribosomal protein L28 RpmB2 |
| M. avium 104 | MAV_4875 | rpmB | 2e-34 | 84.62% (78) | ribosomal protein L28 |
| M. smegmatis MC2 155 | MSMEG_6068 | rpmB | 2e-34 | 80.77% (78) | ribosomal protein L28 |
| M. thermoresistible (build 8) | TH_2053 | rpmB | 5e-10 | 43.86% (57) | ribosomal protein L28 |
| M. ulcerans Agy99 | MUL_4831 | rpmB2 | 3e-33 | 82.05% (78) | 50S ribosomal protein L28 RpmB2 |
| M. vanbaalenii PYR-1 | Mvan_5489 | rpmB | 6e-36 | 83.33% (78) | 50S ribosomal protein L28 |
CLUSTAL 2.0.9 multiple sequence alignment
Mflv_1312|M.gilvum_PYR-GCK ----MSAHCQVTGRKPGFGNAVSHSHRRTRRRWDPNIQRKTYYLPSEGRR
Mvan_5489|M.vanbaalenii_PYR-1 ----MSAHCQVTGRAPGFGNAVSHSHRRTRRRWNPNIQTKTYYLPSEGRR
Rv2058c|M.tuberculosis_H37Rv ----MSAHCQVTGRKPGFGNTVSHSHRRSRRRWSPNIQQRTYYLPSEGRR
Mb2084c|M.bovis_AF2122/97 ----MSAHCQVTGRKPGFGNTVSHSHRRSRRRWSPNIQQRTYYLPSEGRR
MMAR_0292|M.marinum_M ----MSARCQVTGRTVSFGNTVSHSHRRSRRRWSPNIQLKTYYLPSENRR
MUL_4831|M.ulcerans_Agy99 ----MSARCQVTGRTVSFGNTVSHSHRRSRRRWSPNIQLKTYYLPSENRR
MAV_4875|M.avium_104 ----MSADCQVTGRRPSFGNAVSHSHRRTPRRWSPNIQLKTYYLPSEGRR
MAB_0334c|M.abscessus_ATCC_199 MELPLSAHCEVTGRSPGFGNAVSHSHRRTRRRWSPNIQLKTYYLPSEDRR
MSMEG_6068|M.smegmatis_MC2_155 ----MSAHCQVTGRGPGFGNSVSHSHRRTPRRWDPNIQNKTYYLPSEGRR
TH_2053|M.thermoresistible__bu ----MAAVCDICGKAPGFGKSVSHSHRRHSRRWNPNIQTVRAVARPGGNK
::* *:: *: .**::******* ***.**** . ..:
Mflv_1312|M.gilvum_PYR-GCK ITLRVSTKGIKIIDRDGIESVVARLRREEHKL
Mvan_5489|M.vanbaalenii_PYR-1 VKLRVSAKGIKVIDRDGIESVVARLRREGQKI
Rv2058c|M.tuberculosis_H37Rv IRLRVSTKGIKVIDRDGIEAVVARLRRQGQRI
Mb2084c|M.bovis_AF2122/97 IRLRVSTKGIKVIDRDGIEAVVARLRRQGQRI
MMAR_0292|M.marinum_M IKLRVSAKGIKVIDRDGIEATVARLRRAGEQI
MUL_4831|M.ulcerans_Agy99 IKLRVSAKGIKVIDRDGIEATVARLRRAGEQI
MAV_4875|M.avium_104 IRLRVSAKGIKVIDRDGIEAVVARLRRHGQQI
MAB_0334c|M.abscessus_ATCC_199 IKLRVSTKGIKVIDRDGIEAVVARLRAQGRKF
MSMEG_6068|M.smegmatis_MC2_155 IRLRVSAKGIKVIDRDGIEAVVARMRARGEKV
TH_2053|M.thermoresistible__bu QRMNVCASCLKAG---------KVLRG-----
:.*.:. :* :*