For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
TERTTAELLAELREKLELAKEPGGEKAVAKREKKGIPSARARIHALLDPGSFLEIGALAKTPGDPDALYG DGVVTGHGTINGRPVGVFSHDQTVFQGSVGEMFGRKVARLMEWVAMVGCPIIGINDSAGARIQDTATSLA WYAELGRRHELLRGLVPEISLIFGKCAGGAVYSPIQTDLVVAVRDQGYMFVTGPDVIKDVTGEDVTLDEL GGADAQARYGNIHQVVESEAAAFQYVRDYLSFLPGNAFDDAPIVNPGLEPEVTPHDLELDAIVPDADNQA YDMMEILLRIFDDGDVFQVGEQAGPAIITAFARVDGRPVGIIANQPMYMSGAIDNEASDKAARFVRFCDS FNTPLVFVVDTPGFMPGVEQEKGGIIKRGGRFLNAVVEADVPKVTITIRKSYGGAYAVMGSKQLTADFNF AWPTARIAVIGAEGAAQLLVKRFPDPTAPEVQKIRADFIEGYNANLATPWIAAERGFIDGVVEPHETRLL LRKCMHLLRDKQINRVQRKHGLTPI*
Operon Prediction Model: Genebank
Paralogs
species | id | gene | e-value | identity (len) | annotation |
M. vanbaalenii PYR-1 | Mvan_5639 | - | - | 100% (516) | carboxyl transferase |
M. vanbaalenii PYR-1 | Mvan_1677 | - | e-133 | 49.24% (528) | carboxyl transferase |
M. vanbaalenii PYR-1 | Mvan_2019 | - | 2e-68 | 36.03% (494) | propionyl-CoA carboxylase |
Closest Orthologs (e-value cutoff: 1e-4)
species | id | gene | e-value | identity (len) | annotation |
M. bovis AF2122 / 97 | Mb3829c | accD4 | 0.0 | 83.82% (513) | propionyl-CoA carboxylase beta chain |
M. gilvum PYR-GCK | Mflv_1170 | - | 0.0 | 96.32% (516) | carboxyl transferase |
M. tuberculosis H37Rv | Rv3799c | accD4 | 0.0 | 83.82% (513) | propionyl-CoA carboxylase beta chain |
M. leprae Br4923 | MLBr_00102 | accD4 | 0.0 | 81.32% (514) | putative acyl CoA carboxylase beta subunit |
M. abscessus ATCC 19977 | MAB_0181 | - | 0.0 | 79.69% (517) | propionyl-CoA carboxylase, beta subunit (PccB) |
M. marinum M | MMAR_5363 | accD4_1 | 0.0 | 85.19% (513) | propionyl-CoA carboxylase beta chain 4 AccD4_1 |
M. avium 104 | MAV_0220 | - | 0.0 | 81.17% (515) | propionyl-CoA carboxylase beta chain |
M. smegmatis MC2 155 | MSMEG_6391 | - | 0.0 | 86.46% (517) | propionyl-CoA carboxylase beta chain |
M. thermoresistible (build 8) | TH_1608 | - | 0.0 | 85.77% (513) | PROBABLE PROPIONYL-CoA CARBOXYLASE BETA CHAIN 4 ACCD4 (PCCASE) |
M. ulcerans Agy99 | MUL_4982 | accD4_1 | 0.0 | 84.80% (513) | propionyl-CoA carboxylase beta chain 4 AccD4_1 |
CLUSTAL 2.0.9 multiple sequence alignment Mvan_5639|M.vanbaalenii_PYR-1 ---------MTERTTAELLAELREKLELAKEPGGEKAVAKREKKGIPSAR Mflv_1170|M.gilvum_PYR-GCK ---------MTERTTAELLAELREKLELAKEPGGEKAVAKREKKGIPSAR Mb3829c|M.bovis_AF2122/97 ----MTVTEPVLHTTAEKLAELRERLELAKEPGGEKAAAKRDKKGIPSAR Rv3799c|M.tuberculosis_H37Rv ----MTVTEPVLHTTAEKLAELRERLELAKEPGGEKAAAKRDKKGIPSAR MLBr_00102|M.leprae_Br4923 ---------MIMKSTAEKLAELRVRLELANEPGGEKAAAKRDKKNIPSAR MMAR_5363|M.marinum_M MTDTAPGPAPVVHSTAEKLAELRERLELAKEPGGEKAAAKRDKKGIPSAR MUL_4982|M.ulcerans_Agy99 ----------MVHSTAEKLAELRERLELAKEPGGEKAAAKRDKKGIPSAR MAV_0220|M.avium_104 --MTEMAPAPIQHTTAEKLAELYRRLELAKEPGGEKAAAKRDKKGIPSAR TH_1608|M.thermoresistible__bu --VSQESGLRPPKTTAEQLAELREKLEQAKEPGGAKAAAKRDAKGIPSPR MSMEG_6391|M.smegmatis_MC2_155 ---------MTNKTTAELLAELREKLELAKEPGGEKAVAKREKKGIPSAR MAB_0181|M.abscessus_ATCC_1997 ---------MPPHTTAEKLADLRERIALTREPGDAKAIARRDKKGIPSAR ::*** **:* :: :.***. ** *:*: *.***.* Mvan_5639|M.vanbaalenii_PYR-1 ARIHALLDPGSFLEIGALAKTPGDPDALYGDGVVTGHGTINGRPVGVFSH Mflv_1170|M.gilvum_PYR-GCK ARIHSLLDPGSFLEIGALAKTPGDPDALYGDGVVTGHGTINGRPVGVFSH Mb3829c|M.bovis_AF2122/97 ARIYELVDPGSFMEIGALCRTPGDPNALYGDGVVTGHGLINGRPVGVFSH Rv3799c|M.tuberculosis_H37Rv ARIYELVDPGSFMEIGALCRTPGDPNALYGDGVVTGHGLINGRPVGVFSH MLBr_00102|M.leprae_Br4923 ARIYALVDPGTFLEIGALTRTPGDPNALYGDGVVTGHGLINGRQVGVFSH MMAR_5363|M.marinum_M ARVHALVDPGTFFETGALCKTPGDPGALYGDGVVTGHAMIDGRPVGVFSH MUL_4982|M.ulcerans_Agy99 ARVHALVDPGTFFETGALCKTPGDPGALYGDGVVTGHAMIDGRPVGVFSH MAV_0220|M.avium_104 ARIHALVDPGTFLETGALAKTPNDPNALYGDGCVTGHAMIDGRPVGLFSH TH_1608|M.thermoresistible__bu ARIHALLDPGSFVEIGMLAKTPGDPNALYGDGVVTGHGTIDGRPVGVFSH MSMEG_6391|M.smegmatis_MC2_155 ARINALLDPGSFIEIGALAKTPGDPNALYGDGVVTGRGTIDGRPVGVFSH MAB_0181|M.abscessus_ATCC_1997 ARIDALLDKGSFLELDAFARTPGDANAPYTDGVVTGLGRIDGRPVAVFSH **: *:* *:*.* . : :**.*..* * ** *** . *:** *.:*** Mvan_5639|M.vanbaalenii_PYR-1 DQTVFQGSVGEMFGRKVARLMEWVAMVGCPIIGINDSAGARIQDTATSLA Mflv_1170|M.gilvum_PYR-GCK DQTVFQGSVGEMFGRKVAKLMEWVAMVGCPIIGINDSAGARIQDTATSLA Mb3829c|M.bovis_AF2122/97 DQTVFGGTVGEMFGRKVARLMEWCAMVGCPIVGINDSGGARIQDAVTSLA Rv3799c|M.tuberculosis_H37Rv DQTVFGGTVGEMFGRKVARLMEWCAMVGCPIVGINDSGGARIQDAVTSLA MLBr_00102|M.leprae_Br4923 DQTVFGGTVGEMFGRKVARLMEWCAMAGCPIVGINDSGGARIQDAVTSLA MMAR_5363|M.marinum_M DQTVFQGSVGEMFGRKVARLMEWCSMVGCPIIGINDSAGARIQDTATSLA MUL_4982|M.ulcerans_Agy99 DQTVFQGSVGEMFGRKVARLMEWCSMVGCPIIGINDSAGARIQDTATSLA MAV_0220|M.avium_104 DQTVFQGTVGEMFGRKVARLMEWCAMVGCPIIGIQDSGGARIQDAVTSLA TH_1608|M.thermoresistible__bu DQTVFGGSVGEMFGRKVSRLMEWVAMVGCPIIGINDSGGARIQDLATSLA MSMEG_6391|M.smegmatis_MC2_155 DQTVFQGSVGEMFGRKVARLMEWVAMVGCPIIGINDSAGARIQDAVTSLA MAB_0181|M.abscessus_ATCC_1997 DQTVYQGSVGEMFGRKVAKLMEWAATNGCPVIGINDSAGARIQDTATSLA ****: *:*********::**** : ***::**:**.****** .**** Mvan_5639|M.vanbaalenii_PYR-1 WYAELGRRHELLRGLVPEISLIFGKCAGGAVYSPIQTDLVVAVRDQGYMF Mflv_1170|M.gilvum_PYR-GCK WYAELGRRHELLRGLVPEISLIFGKCAGGAVYSPIQTDLVVAVRDQGYMF Mb3829c|M.bovis_AF2122/97 WYAELGRRHELLSGLVPQISIILGKCAGGAVYSPIQTDLVVAVRDQGYMF Rv3799c|M.tuberculosis_H37Rv WYAELGRRHELLSGLVPQISIILGKCAGGAVYSPIQTDLVVAVRDQGYMF MLBr_00102|M.leprae_Br4923 WYAELGRRHELLSGIVPQISIVLGKCAGGAVYSPIQTDLVVAVRGQGYMF MMAR_5363|M.marinum_M WYAELGRRHEILSGQVPQISIILGKCAGGAVYSPIQTDLVVAVRDQGYMF MUL_4982|M.ulcerans_Agy99 WYAELGRRHEILSGQVPQISIILGKCAGGAVYSPIQTDLVVAVRDQGYMF MAV_0220|M.avium_104 WYAELGRRHEALSGLVPQISLIFGKCAGGAVYSPIQDDLLVSVRDQGYFF TH_1608|M.thermoresistible__bu WYAELGRRHELLSGLVPQISIILGKCAGGAVYSPIQTDLIVAVRDQGYMF MSMEG_6391|M.smegmatis_MC2_155 WYAELGRRHEMLRGLVPEISLIFGKCAGGAVYSPIQTDLLVAVRDQGYMF MAB_0181|M.abscessus_ATCC_1997 WYAELGRRHELLRGTVPEISIILGKCAGGAVYSPIQTDLLVAVRDQGYMF ********** * * **:**:::************* **:*:**.***:* Mvan_5639|M.vanbaalenii_PYR-1 VTGPDVIKDVTGEDVTLDELGGADAQARYGNIHQVVESEAAAFQYVRDYL Mflv_1170|M.gilvum_PYR-GCK VTGPDVIKDVTGEDVTLDELGGADAQARYGNIHQVVESEAAAFQYVRDYL Mb3829c|M.bovis_AF2122/97 VTGPDVIKDVTGEDVSLDELGGADHQASYGNIHQVVESEAAAYQYVRDFL Rv3799c|M.tuberculosis_H37Rv VTGPDVIKDVTGEDVSLDELGGADHQASYGNIHQVVESEAAAYQYVRDFL MLBr_00102|M.leprae_Br4923 VTGPDVIKDVTGEEVSLDELGGVDSQAKYGNIHQVVESEAAAFGYVRDFL MMAR_5363|M.marinum_M VTGPDVIKDVTGEDVSLDELGGADSQARYGNIHQVVEDEAAAFQYVRDFL MUL_4982|M.ulcerans_Agy99 VTGPDVIKDVTGEDVSLDELGGADSQARYGNIHQVVEDEAAAFQYVRDFL MAV_0220|M.avium_104 VTGPDVIREVTGEEVTLDELGGSDAQARYGNIHHVVNTEAEAFQYVREYL TH_1608|M.thermoresistible__bu VTGPDVIKDVTGEEVTLDELGGADAQARYGNIHTVVNSEKEAFQYVRDYL MSMEG_6391|M.smegmatis_MC2_155 ITGPDVIKDVTGEDVTFDELGGADEQAKRGNIHKVVNSEAEAYQYVRDYL MAB_0181|M.abscessus_ATCC_1997 ITGPDVIKDVTGEDVSFDELGGADVQAQRGNIHKVVEDEAAAFQYVRDYL :******::****:*::***** * ** **** **: * *: ***::* Mvan_5639|M.vanbaalenii_PYR-1 SFLPGNAFDDAPIVNPGLEPEVTPHDLELDAIVPDADNQAYDMMEILLRI Mflv_1170|M.gilvum_PYR-GCK SFLPANTFDDAPIVNPGLEPEITPHDLELDAIVPDSDNQAYDMMEILLRI Mb3829c|M.bovis_AF2122/97 SFLPSNCFDKPPVVNPGLEPEITGHDLELDSIVPDSDNMAYDMHEVLLRI Rv3799c|M.tuberculosis_H37Rv SFLPSNCFDKPPVVNPGLEPEITGHDLELDSIVPDSDNMAYDMHEVLLRI MLBr_00102|M.leprae_Br4923 SFLPPNCFDKAPIVNPGLEPEIMAHDLELDSIVPDSDNTAYDMREVLLRI MMAR_5363|M.marinum_M SFLPSDCFGDPPVVNPGLEPEITPSDLELDSIVPDSDNTAYDMHEILLRI MUL_4982|M.ulcerans_Agy99 SFLPSDCFGDPPVVNPGLEPEITPSDLELDSIVPDSDNTAYDMHEILLRI MAV_0220|M.avium_104 SFLPSNCFDQPPIVNPGLEPEITPTDLELDSIVPDSDNMSYDMHEILLRI TH_1608|M.thermoresistible__bu GFLPANTFDDAPIVNPGLEPEITPHDLELDSIVPDNDNTAYDMHEILLRI MSMEG_6391|M.smegmatis_MC2_155 SFLPSNHFDNPPIVNPGMEPEITPHDLELDSIVPDADNMAYDMHEILLRI MAB_0181|M.abscessus_ATCC_1997 SFLPSNTFDYPPIVNPGLEPEITEDDLYLDTFIPDSDNQGYDMMEILLRI .*** : *. .*:****:***: ** **:::** ** .*** *:**** Mvan_5639|M.vanbaalenii_PYR-1 FDDGDVFQVGEQAGPAIITAFARVDGRPVGIIANQPMYMSGAIDNEASDK Mflv_1170|M.gilvum_PYR-GCK FDDGDVFQVAEQAGPAIITAFARVDGRPVGVIANQPMYMSGAIDNEASDK Mb3829c|M.bovis_AF2122/97 FDDGDFLDVAAQAGQAIITGYARVDGRTVGVVANQPMHMSGAIDNEASDK Rv3799c|M.tuberculosis_H37Rv FDDGDFLDVAAQAGQAIITGYARVDGRTVGVVANQPMHMSGAIDNEASDK MLBr_00102|M.leprae_Br4923 FDDGHFLDVAAQAGQAIITGYARVDGRTVGVVANQPMHLSGAIDNEASDK MMAR_5363|M.marinum_M FDDGDFLDVAAQAGQAIITGYARVDGRPVGVVANQPMHMSGAIDNEASDK MUL_4982|M.ulcerans_Agy99 FDDGDFLDVAAQASQAIITGYARVDGRPVGVVANQPMHMSGAIDNEASDK MAV_0220|M.avium_104 FDDGDFLEVAAQHGPAIITGYARVDGHPVGVIANQPMHLSGSIDNEASDK TH_1608|M.thermoresistible__bu FDDGDFLEVAGQAGQAIITGFARVDGRPVGVVANQPMVLSGAIDNEASDK MSMEG_6391|M.smegmatis_MC2_155 FDDGDVFEIAEQRGPAMITAFARVDGHPVGVIANQPMVLSGAIDNEASDK MAB_0181|M.abscessus_ATCC_1997 FDDGDIFEISEQRGPAMITAFARVDGHPVGVIANQPLQMAGAVDTDASDK ****..:::. * . *:**.:*****:.**::****: ::*::*.:**** Mvan_5639|M.vanbaalenii_PYR-1 AARFVRFCDSFNTPLVFVVDTPGFMPGVEQEKGGIIKRGGRFLNAVVEAD Mflv_1170|M.gilvum_PYR-GCK AARFVRFCDSFNTPLVFVVDTPGFMPGVEQEKGGIIKRGGRFLNAVVEAS Mb3829c|M.bovis_AF2122/97 AARFIRFSDAFDIPLVFVVDTPGFLPGVEQEKNGIIKRGGRFLYAVVEAD Rv3799c|M.tuberculosis_H37Rv AARFIRFSDAFDIPLVFVVDTPGFLPGVEQEKNGIIKRGGRFLYAVVEAD MLBr_00102|M.leprae_Br4923 AARFIRFCDAFNIPLVFVVDTPGFLPGVEQEKNGIIKRGGRFLYAVVEAD MMAR_5363|M.marinum_M AARFVRFCDAFKIPLVFVVDTPGFLPGAEQEKNGIIKRGGRFLYAVVEAD MUL_4982|M.ulcerans_Agy99 AARFVRFCDAFKIPLVFVVDTPGFLPGAEQEKNGIIKRGGRFLYAVVEAD MAV_0220|M.avium_104 AARFIRFCDAFNIPLVFVVDTPGFLPGAEEEKRGIIKRGGRFLYSVVEAD TH_1608|M.thermoresistible__bu AARFVRFCDAFNTPLVFVVDTPGFLPGVEQEKNGIIKRGGRFLYAVVEAD MSMEG_6391|M.smegmatis_MC2_155 AASFIRFCDSYNLPLVFVVDTPGAMPGVAEEKGGIIKRGGRFFNAIVEAD MAB_0181|M.abscessus_ATCC_1997 AASFIRFCDAYNLPLVFVVDTPGALPGVSEEKNGIIKKGGRFFNAVVEAD ** *:**.*::. ********** :**. :** ****:****: ::***. Mvan_5639|M.vanbaalenii_PYR-1 VPKVTITIRKSYGGAYAVMGSKQLTADFNFAWPTARIAVIGAEGAAQLLV Mflv_1170|M.gilvum_PYR-GCK VAKVTITIRKSYGGAYAVMGSKQLTSDFNFAWPTARIAVIGADGAAQLLV Mb3829c|M.bovis_AF2122/97 VPKVTITIRKSYGGAYAVMGSKQLTADLNFAWPTARIAVIGADGAAQLLM Rv3799c|M.tuberculosis_H37Rv VPKVTITIRKSYGGAYAVMGSKQLTADLNFAWPTARIAVIGADGAAQLLM MLBr_00102|M.leprae_Br4923 VPKVTITIRKSYGGAYAVMGSKQLAADLNFAWPTARIAVIGADGAAQLLM MMAR_5363|M.marinum_M VPKVTITIRKSYGGAYAVMGSKQLTADFNFAWPTARIAVIGADGAAQLLM MUL_4982|M.ulcerans_Agy99 VPKVTITIRKSYGGAYAVMGSKQLTADFNFAWPTARIAVIGADGAAQLLM MAV_0220|M.avium_104 VPKVTITVRKSYGGAYAVMGSRQLTADFNFAWPTARIAVIGAEGAAQLLM TH_1608|M.thermoresistible__bu VPKVTITVRKSYGGAYAVMGSKQLTSDFNFLWPTARIAVIGAEGAAQLIM MSMEG_6391|M.smegmatis_MC2_155 VPKVTVIIRKAYGGGYAVMGSKQLSADLNFAWPTARIAVIGAEGAAQLLV MAB_0181|M.abscessus_ATCC_1997 VPKVTIITRKAYGGGYAVMGSKQLSADLNYVWPTARIAVIGAEGAAQLLV *.***: **:***.******:**::*:*: ***********:*****:: Mvan_5639|M.vanbaalenii_PYR-1 KRFPDPTAPEVQKIRADFIEGYNANLATPWIAAERGFIDGVVEPHETRLL Mflv_1170|M.gilvum_PYR-GCK KRFPDPTAPEVQKIKADFIEGYNANLAVPWIAAERGFIDGVIEPHETRLL Mb3829c|M.bovis_AF2122/97 KRFPDPNAPEAQAIRKSFVENYNLNMAIPWIAAERGFIDAVIDPHETRLL Rv3799c|M.tuberculosis_H37Rv KRFPDPNAPEAQAIRKSFVENYNLNMAIPWIAAERGFIDAVIDPHETRLL MLBr_00102|M.leprae_Br4923 KRFPDPSSPDVQAIRKTFVDNYNLNMAIPWIAAERGFIDAVVEPHQTRLL MMAR_5363|M.marinum_M KRFPDPTTPEAQKIKRDFIEGYNLNMAIPWIAAERGFIDAVVDPHQTRLL MUL_4982|M.ulcerans_Agy99 KRFPDPTTPEAQKIKRDFIEGYNLNMAIPWIAAERGYIDAVVDPHQTRLL MAV_0220|M.avium_104 KRFPDPTTPEAQQIKKDFIEGYNLNMAIPWTAAERGFIDAVIDPHETRLL TH_1608|M.thermoresistible__bu KRFPDPNAPEVQEIRRQFIEGYNRDMATPYVAAERGYVDAVIEPHETRLK MSMEG_6391|M.smegmatis_MC2_155 KRFPDPNAPEVQKIRDDFIEGYNLNMATPWIAAERGYIDAVIQPHETRLL MAB_0181|M.abscessus_ATCC_1997 KRFPDPTAPEVQKIRADFIEGYNKNLATPWIAAERGYIDGVIEPHQTRLL ******.:*:.* *: *::.** ::* *: *****::*.*::**:*** Mvan_5639|M.vanbaalenii_PYR-1 LRKCMHLLRDKQ-INRVQRKHGLTPI Mflv_1170|M.gilvum_PYR-GCK LRKCLHLLADKQ-INRVHRKHGLTPI Mb3829c|M.bovis_AF2122/97 LRKSMHLLRDKQLWWRVGRKHGLIPV Rv3799c|M.tuberculosis_H37Rv LRKSMHLLRDKQLWWRVGRKHGLIPV MLBr_00102|M.leprae_Br4923 LRKSLHLLRDKQQWWRVGRKHGLIPL MMAR_5363|M.marinum_M LRKSMHLLRDKQLWWRVGRKHGLIPV MUL_4982|M.ulcerans_Agy99 LRKSMHLLRDKQLWWRVGRKHGLIPV MAV_0220|M.avium_104 LRKSLKLLRDKQLWFRVARKHGLIPV TH_1608|M.thermoresistible__bu LRSAMRLLRDKQ-IQRVQRKHGLIPI MSMEG_6391|M.smegmatis_MC2_155 LRKSLRLLRDKQNGPKVQRKHGLLPL MAB_0181|M.abscessus_ATCC_1997 LRKSLKLLRDKQKHDRMQRKHGLTPI **..::** *** :: ***** *: