For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
VVSVSGFDDWLNRLVMELADKAGLSPDRYVAEAVAMRLMDDVTTNDGVHDELLAHLSNAQIPVPAQWQWP QSIITDPERLRVLYATGLLDSPAEKVYDRIVDMAAAALAAPGAAVSLVDHDRQFFVSMHGSTGQEPESRE TSIQRSLCQYAVASGQPLVLADARTDPVLQHNPAVSDGSVVAYLGIPLIGRDHHAVGTLCVWDNTPRDWT SGHVTTLRDLAQLAADHIFPRAQRGQAP
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. vanbaalenii PYR-1 | Mvan_5263 | - | - | 100% (238) | putative GAF sensor protein |
| M. vanbaalenii PYR-1 | Mvan_2036 | - | 3e-44 | 41.92% (229) | putative GAF sensor protein |
| M. vanbaalenii PYR-1 | Mvan_2109 | - | 4e-14 | 34.48% (145) | diguanylate cyclase with PAS/PAC sensor |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | - | - | - | - | - |
| M. gilvum PYR-GCK | Mflv_1493 | - | 3e-64 | 66.29% (178) | putative GAF sensor protein |
| M. tuberculosis H37Rv | - | - | - | - | - |
| M. leprae Br4923 | - | - | - | - | - |
| M. abscessus ATCC 19977 | - | - | - | - | - |
| M. marinum M | - | - | - | - | - |
| M. avium 104 | - | - | - | - | - |
| M. smegmatis MC2 155 | MSMEG_4553 | - | 2e-05 | 31.51% (73) | GAF domain-containing protein |
| M. thermoresistible (build 8) | - | - | - | - | - |
| M. ulcerans Agy99 | - | - | - | - | - |
CLUSTAL 2.0.9 multiple sequence alignment
Mvan_5263|M.vanbaalenii_PYR-1 MVSVSGFDDWLNRLVMELADKAG---LSPDRYVAEAVAMRLMDDVTTNDG
Mflv_1493|M.gilvum_PYR-GCK --MRGDLPIGLRRLAQPLGRRAGGSRRSNGPRLCRPGGRHPADGRHQAAR
MSMEG_4553|M.smegmatis_MC2_155 --------------------------------------------------
Mvan_5263|M.vanbaalenii_PYR-1 VHD--ELLAHLSNAQIPVPAQWQWPQSIITDPERLRVLYATGLLDSPAEK
Mflv_1493|M.gilvum_PYR-GCK RRDGGLLRASLRGRHRPSPGN-QRPQSRRVRPARLQALQSTGLLDAPPDV
MSMEG_4553|M.smegmatis_MC2_155 ------MSTAEPHRTDTTPALSPVAANLEAVAEKLGVKSVLVMRSEP---
: : . *. . . . . :* . : . *
Mvan_5263|M.vanbaalenii_PYR-1 VYDRIVDMAAAALAAPGAAVSLVDHDRQFFVSMHGSTGQEPESRETSIQR
Mflv_1493|M.gilvum_PYR-GCK AYNRITDMAATALAAPGAAITLVDADRQFFVAMHGSATDEPEARETPLAR
MSMEG_4553|M.smegmatis_MC2_155 -----DSMVVAATAG--------EATKHYTVGAAGRKAGSDAGR----VP
.*..:* *. : ::: *. * . .*
Mvan_5263|M.vanbaalenii_PYR-1 SLCQYAVASGQPLVLADARTDPVLQHNPAVSDGSVVAYLGIPLIGRDHHA
Mflv_1493|M.gilvum_PYR-GCK SICQYAVAAGQPLVVSDARTDPVLKYNPAVTDGTVVSYLGIPLIDGSHHA
MSMEG_4553|M.smegmatis_MC2_155 LYCERVVASDETLFVRDSRQDNTFAGNEDETEFGLSNYLGLAVHDGSGNV
*: .**:.:.*.: *:* * .: * :: : ***:.: . . :.
Mvan_5263|M.vanbaalenii_PYR-1 VGTLCVWDNTPRDWTSGHVTTLRDLAQLAADHIFPRAQRGQAP
Mflv_1493|M.gilvum_PYR-GCK IGTLCVWDTSPREWTSGHVTTLRDLAHLASARIFNE-------
MSMEG_4553|M.smegmatis_MC2_155 VGTVCVLDDTARDYSDDDRRELEELRAQVEQIVARDDTALG--
:**:** * :.*:::... *.:* . :