For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
LAGTPNAVARMLSLLGDEWTLLIVQRALLGARRYGDFAAALPVSNTVLSGRLQSLTADGLLIRSQYQSNP PRSEYLPTSMGRSLWPMLTSIWEWERRWVPEHAEPLPRMHHATCGRPFQPVVTCRACDGPASGKDVAAQW GPSGSWERSIPSGTNRRRSSGRRSGAALLFPQTMSVVGDRWAFALLVAAFVGVGRFTDFQAQLGAPPATI ADRLSVFTDENILGQSGGRYGLTEKGLAFFPVLVCALAWAQRWLPSPEGPAVLLTHTACDRRFAPVLVCD QCGNRLRAEQVLPVS
Operon Prediction Model: Genebank
Paralogs
species | id | gene | e-value | identity (len) | annotation |
M. vanbaalenii PYR-1 | Mvan_4941 | - | - | 100% (295) | HxlR family transcriptional regulator |
M. vanbaalenii PYR-1 | Mvan_2618 | - | 3e-10 | 26.89% (119) | HxlR family transcriptional regulator |
M. vanbaalenii PYR-1 | Mvan_1032 | - | 7e-08 | 32.00% (100) | HxlR family transcriptional regulator |
Closest Orthologs (e-value cutoff: 1e-4)
species | id | gene | e-value | identity (len) | annotation |
M. bovis AF2122 / 97 | Mb3122 | - | 4e-21 | 35.29% (136) | putative transcriptional regulatory protein |
M. gilvum PYR-GCK | Mflv_1806 | - | 1e-128 | 75.70% (284) | HxlR family transcriptional regulator |
M. tuberculosis H37Rv | Rv3095 | - | 4e-21 | 35.29% (136) | putative transcriptional regulatory protein |
M. leprae Br4923 | - | - | - | - | - |
M. abscessus ATCC 19977 | MAB_3456 | - | 3e-15 | 31.40% (121) | HxlR family transcriptional regulator |
M. marinum M | MMAR_1555 | - | 6e-18 | 33.58% (137) | transcriptional regulatory protein |
M. avium 104 | MAV_4183 | - | 6e-10 | 29.17% (120) | putative transcriptional regulator family protein |
M. smegmatis MC2 155 | MSMEG_5610 | - | 5e-94 | 57.24% (297) | putative transcriptional regulator family protein |
M. thermoresistible (build 8) | TH_2405 | - | 9e-09 | 36.26% (91) | putative transcriptional regulator |
M. ulcerans Agy99 | MUL_3475 | - | 4e-18 | 33.58% (137) | transcriptional regulatory protein |
CLUSTAL 2.0.9 multiple sequence alignment Mb3122|M.bovis_AF2122/97 --------MAVSDLSHRFEGESVGRALELVGERWTLLILREAFFGVRRFG Rv3095|M.tuberculosis_H37Rv --------MAVSDLSHRFEGESVGRALELVGERWTLLILREAFFGVRRFG MMAR_1555|M.marinum_M --------MGAADLSHRFEGESVGRALELVGERWTLLILREAFFGVQRFG MUL_3475|M.ulcerans_Agy99 --------MGAADLSHRFEGESVGRALELVGERWTLLILREAFFGVQRFG MAB_3456|M.abscessus_ATCC_1997 --------MDFTTMRN----CSISNALDVIGERWTLVALREIMLGNRRFE Mvan_4941|M.vanbaalenii_PYR-1 ---------------MAGTPNAVARMLSLLGDEWTLLIVQRALLGARRYG Mflv_1806|M.gilvum_PYR-GCK -------------------------MLGLLGDEWTLLIVQRALLGARRYG MSMEG_5610|M.smegmatis_MC2_155 MDDPQPRTASGPTELAPGGTNAVGHMLALLGDEWSLLVMQQALLGATRYG MAV_4183|M.avium_104 -MTLLQGPLADRDAWSAVGECAIEKTMAVVGTKSAMLIMREAYYGTTRFD TH_2405|M.thermoresistible__bu -----------MASRTYGQHCALAKSLDLVGDRWTLLIVRELLDGPRRYS : ::* . ::: ::. * *: Mb3122|M.bovis_AF2122/97 QLARNLG-IPRPTLSSRLRMLVEVGLFDRVPYSS--DPERHEYRLTEAGR Rv3095|M.tuberculosis_H37Rv QLARNLG-IPRPTLSSRLRMLVEVGLFDRVPYSS--DPERHEYRLTEAGR MMAR_1555|M.marinum_M QLARNLN-IPRPTLSSRLRMLVNAGLLDRVPYSQ--DPERHEYRLTDTGH MUL_3475|M.ulcerans_Agy99 QLARNLN-IPRPTLSSRLRMLVNAGLLDRVPYSQ--DPERHEYRLTDTGH MAB_3456|M.abscessus_ATCC_1997 TIVRNTG-ASRDILATRLRKLVDAGVLEKRRYED--RPPRYEYLLTQSGQ Mvan_4941|M.vanbaalenii_PYR-1 DFAAALP-VSNTVLSGRLQSLTADGLLIRSQYQS--NPPRSEYLPTSMGR Mflv_1806|M.gilvum_PYR-GCK EFLDALP-VSNAVLTSRLQSLSATEMLSRNQYQS--NPPRFEYLVTPMSR MSMEG_5610|M.smegmatis_MC2_155 QFMSRLP-ISNSVLTRRLGTLTADGLLRRHRYQD--RPPRDEYLVTARGR MAV_4183|M.avium_104 DFARRVG-ITKAATSARLAELVELGLLKRRPYREPGQRSRDEYVLTQAGI TH_2405|M.thermoresistible__bu DLLTALRPIATDMLATRLRHLEEHHLVRRRELPK--PASGTVYELTADGA : . : ** * :. : . * * . Mb3122|M.bovis_AF2122/97 DLFAAIVVLMQWGDEYLPRPEGPPIKLRHHTCGEHADPRLICTHCGEEIT Rv3095|M.tuberculosis_H37Rv DLFAAIVVLMQWGDEYLPRPEGPPIKLRHHTCGEHADPRLICTHCGEEIT MMAR_1555|M.marinum_M ELFAAIVVLMQWGDKHLPNPDGPPIVLRHH-CGQFVEPRLICAHCGEEIT MUL_3475|M.ulcerans_Agy99 ELFAAIVVLMQWGDKHLPNPDGPPIVLRHH-CGQFVEPRLICAHCGEEIT MAB_3456|M.abscessus_ATCC_1997 ALRPVLFALMEWGDKFVTK--GPPPSIWEHQCGSVLHIQPTCESCGEAVT Mvan_4941|M.vanbaalenii_PYR-1 SLWPMLTSIWEWERRWVPEHAEPLPRMHHATCGRPFQPVVTCRACDGPAS Mflv_1806|M.gilvum_PYR-GCK SLWPMLTSIWEWERRWVTDHAEPLPRMRHTGCGHEFAPRVVCRSCTAEAS MSMEG_5610|M.smegmatis_MC2_155 ALWPILLSIWEWERRWVPEQRDALPGMRHISCGEEFHPLLSCSACEKEAN MAV_4183|M.avium_104 DFMPVVWAMFEWGRRHLPG--RHRLQLTHLGCGAEVGVEIRCAEG-HLVP TH_2405|M.thermoresistible__bu ALEAVVHAFIRWG-RSLLETRRAGDVVRPHWLARAVRAHVRPDRTGPPLS : . : : .* . : : . Mb3122|M.bovis_AF2122/97 ARNVTPEPGPGFKAKLASS------------------------------- Rv3095|M.tuberculosis_H37Rv ARNVTPEPGPGFKAKLASS------------------------------- MMAR_1555|M.marinum_M ARNVTPEAGPGFGDAVAAPN------------------------------ MUL_3475|M.ulcerans_Agy99 ARNVTPEAGPGYGDAVAAPN------------------------------ MAB_3456|M.abscessus_ATCC_1997 FDDLTPR-------RLGRVR------------------------------ Mvan_4941|M.vanbaalenii_PYR-1 GKDVAAQWGPSGSWERSIPSGTNRRRS-SGR----RSGAALLFPQTMSVV Mflv_1806|M.gilvum_PYR-GCK GNDVVAQWGPSGSWQRSIPGGTQRRRS-SGH----RSGAAILFPQTMSVI MSMEG_5610|M.smegmatis_MC2_155 PGEVVARWGPSGGWQRALPVATTRRRSGSGSGADDRDSPSGLFPQTMSVL MAV_4183|M.avium_104 PDELGMRLAKKSG------------------------------------- TH_2405|M.thermoresistible__bu VRLVTPEGAAAVRISADAVED---------------------LDDDTAVD : . Mb3122|M.bovis_AF2122/97 -------------------------------------------------- Rv3095|M.tuberculosis_H37Rv -------------------------------------------------- MMAR_1555|M.marinum_M -------------------------------------------------- MUL_3475|M.ulcerans_Agy99 -------------------------------------------------- MAB_3456|M.abscessus_ATCC_1997 -------------------------------------------------- Mvan_4941|M.vanbaalenii_PYR-1 GDRWAFALLVAAFVGVGRFTDFQAQLGAPPATIADRLSVFTDENILGQSG Mflv_1806|M.gilvum_PYR-GCK GDRWAFAMLVAAFVGMRRFTDFQAQLGAPPTTVADRLTTFTDEGILVSGD MSMEG_5610|M.smegmatis_MC2_155 GNRWACAILVAAFTGTTRFSTFQKLLAAPPGSVSDRLARFRANGIMTTSP MAV_4183|M.avium_104 -------------------------------------------------- TH_2405|M.thermoresistible__bu VTLTGAAEVLAAALHPDRAAELVAQGRLRVDGRADALRRLAEVVTAPAGR Mb3122|M.bovis_AF2122/97 -------------------------------------------------- Rv3095|M.tuberculosis_H37Rv -------------------------------------------------- MMAR_1555|M.marinum_M -------------------------------------------------- MUL_3475|M.ulcerans_Agy99 -------------------------------------------------- MAB_3456|M.abscessus_ATCC_1997 -------------------------------------------------- Mvan_4941|M.vanbaalenii_PYR-1 GR--YGLTEKGLAFFPVLVCALAWAQRWLPSPEGPAVLLTHTACDRRFAP Mflv_1806|M.gilvum_PYR-GCK GG--YQFTDKGRAFFPVLVCALSWAQRWFPSPEGPAVILTHTACGRRFDP MSMEG_5610|M.smegmatis_MC2_155 ERPEYLLTAKGEAFLPVLVTGLQWAQGWFSAPEGPAVNLTHTACDQVFHP MAV_4183|M.avium_104 -------------------------------------------------- TH_2405|M.thermoresistible__bu AVPDRS-------------------------------------------- Mb3122|M.bovis_AF2122/97 -------------------- Rv3095|M.tuberculosis_H37Rv -------------------- MMAR_1555|M.marinum_M -------------------- MUL_3475|M.ulcerans_Agy99 -------------------- MAB_3456|M.abscessus_ATCC_1997 -------------------- Mvan_4941|M.vanbaalenii_PYR-1 VLVCDQCGNRLRAEQVLPVS Mflv_1806|M.gilvum_PYR-GCK VLRCDQCQRHLRGAQIRPVP MSMEG_5610|M.smegmatis_MC2_155 VLRCDRCKEPLTGNSVQTI- MAV_4183|M.avium_104 -------------------- TH_2405|M.thermoresistible__bu --------------------