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TDGAFSARPDHARLGNNIPTGRVVAFERSSPSDRTHLETEDPTTTTQAPTAAPVAAPVTMAHLEQFTDAA WVEPADELTGTAVFDATGDKAAMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSVQNYQ PGTFEGWLHRITTNLFLDMVRRRGRIRMEALPEDYDRVPADEPNPEQIYHDSRLGPDLQAALDSLAPEFR AAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALREYLARHSDAGAGRDTARSA*
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. vanbaalenii PYR-1 | Mvan_4496 | - | - | 100% (269) | RNA polymerase sigma factor SigE |
| M. vanbaalenii PYR-1 | Mvan_2297 | - | 7e-22 | 33.01% (206) | ECF subfamily RNA polymerase sigma-24 factor |
| M. vanbaalenii PYR-1 | Mvan_1778 | - | 6e-21 | 33.62% (232) | ECF subfamily RNA polymerase sigma-24 factor |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | Mb1253 | sigE | 1e-105 | 86.67% (210) | RNA polymerase sigma factor SigE |
| M. gilvum PYR-GCK | Mflv_2200 | - | 1e-128 | 83.75% (277) | RNA polymerase sigma factor SigE |
| M. tuberculosis H37Rv | Rv1221 | sigE | 1e-105 | 86.67% (210) | RNA polymerase sigma factor SigE |
| M. leprae Br4923 | MLBr_01076 | sigE | 1e-100 | 75.51% (245) | RNA polymerase sigma factor SigE |
| M. abscessus ATCC 19977 | MAB_1362 | - | 6e-97 | 88.27% (196) | alternative RNA polymerase sigma factor |
| M. marinum M | MMAR_4216 | sigE | 1e-102 | 78.28% (244) | alternative RNA polymerase sigma factor SigE |
| M. avium 104 | MAV_1365 | - | 1e-103 | 86.96% (207) | RNA polymerase sigma-70 factor |
| M. smegmatis MC2 155 | MSMEG_5072 | - | 1e-113 | 79.69% (261) | RNA polymerase sigma factor SigE |
| M. thermoresistible (build 8) | TH_0545 | sigE | 1e-101 | 85.71% (203) | ALTERNATIVE RNA POLYMERASE SIGMA FACTOR SIGE |
| M. ulcerans Agy99 | MUL_4519 | sigE | 1e-103 | 78.28% (244) | RNA polymerase sigma factor SigE |
CLUSTAL 2.0.9 multiple sequence alignment
Mvan_4496|M.vanbaalenii_PYR-1 MTDGAFS-----ARPDHARLGNNIPTGRVVAFERSSPSDRTHLETEDPTT
Mflv_2200|M.gilvum_PYR-GCK MTEGARTDTVRTARIDSARSRNENASARVAEHD-GSPQGGPHHHLEDPTT
MSMEG_5072|M.smegmatis_MC2_155 MEHDDRR-------ASQVRAGNNRVVIRVEQIE-----NNAVHEQEGSTT
Mb1253|M.bovis_AF2122/97 -----------MELLGGPRVGNTESQLCVADGD-DLPTYCS-ANSEDLNI
Rv1221|M.tuberculosis_H37Rv -----------MELLGGPRVGNTESQLCVADGD-DLPTYCS-ANSEDLNI
MMAR_4216|M.marinum_M -----------MER-GGRGLGNTEWQLRVAAGD-ELPMSDGREKPEEHTI
MUL_4519|M.ulcerans_Agy99 -----------MER-GGRGLGNTAWQLRVAAGD-ELPMSDGREKPEEHTI
MLBr_01076|M.leprae_Br4923 -----MGDGIGMER-EGRWTGNTQCPLRVVPGD-ESPTLDGRASPEDLII
MAV_1365|M.avium_104 -----------MDR-GARETGNTEWQLPVAAND-EMP-LIGMPNSEELII
TH_0545|M.thermoresistible__bu --------------------------------------------------
MAB_1362|M.abscessus_ATCC_1997 ----MSRSILNQSPSDPRLSGNNTDGIWVEQAD-GLPTGGEAAVTEQ---
Mvan_4496|M.vanbaalenii_PYR-1 TTQAPT---------AAPVAAPVTMAHLEQFTDAAWVEPA--DELTGTAV
Mflv_2200|M.gilvum_PYR-GCK TTQAPTSSVSAAAPVAAPVAAPVSMAHREQFTEAEWVEPT--DELTGTAV
MSMEG_5072|M.smegmatis_MC2_155 IASQPV---------TATHAAPVSMAHLEQFTDSDWVEPS--DEPTGTAV
Mb1253|M.bovis_AF2122/97 TT--------------ITTLSPTSMSHPQQVRDDQWVEPS--DQLQGTAV
Rv1221|M.tuberculosis_H37Rv TT--------------ITTLSPTSMSHPQQVRDDQWVEPS--DQLQGTAV
MMAR_4216|M.marinum_M T-----------------TLSTTTMSHPQLVRDDEWAETS--DGLLGTAV
MUL_4519|M.ulcerans_Agy99 T-----------------TLSTTTMSHPQLVRDDEWAETS--DGLLGTAV
MLBr_01076|M.leprae_Br4923 TN----------------LLSPTIMSHPPPSRDDDWVEPF--DALQGTAV
MAV_1365|M.avium_104 TT----------------LLSPSSMSHAHDPSADGWAEPS--DGLQGTAV
TH_0545|M.thermoresistible__bu ------------------MSVPASMTHFAPPQATEWAEPV--EEPTGTAV
MAB_1362|M.abscessus_ATCC_1997 ------------------EEHAISLTRISEPDYTEFVDAANADELSGTAV
. ::: :.:. : ****
Mvan_4496|M.vanbaalenii_PYR-1 FDATGDKAAMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVF
Mflv_2200|M.gilvum_PYR-GCK FDATGDKAAMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVF
MSMEG_5072|M.smegmatis_MC2_155 FDATGDQAAMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVF
Mb1253|M.bovis_AF2122/97 FDATGDKATMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVF
Rv1221|M.tuberculosis_H37Rv FDATGDKATMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVF
MMAR_4216|M.marinum_M FDATGDKAAMPSWDELVRQHADRVYRLAYRLSGNQQDAEDLTQETFIRVF
MUL_4519|M.ulcerans_Agy99 FDATGDKAAMPSWDELVRQHADRVYRLAYRLSGNQQDAEDLTQETFIRVF
MLBr_01076|M.leprae_Br4923 FDATGDKATMPSWEELVRQHAARVYWLAYRLSGNQHDAEDLTQETFIRVF
MAV_1365|M.avium_104 FDATGDKTAMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVF
TH_0545|M.thermoresistible__bu FDATGDKSTMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVF
MAB_1362|M.abscessus_ATCC_1997 FDATGDQAAMPSWDELVREHADRVYRLAYRLSGSQQDAEDLTQETFIRVF
******:::****:****:** *** *******.*:**************
Mvan_4496|M.vanbaalenii_PYR-1 RSVQNYQPGTFEGWLHRITTNLFLDMVRRRGRIRMEALPEDYDRVPADEP
Mflv_2200|M.gilvum_PYR-GCK RSVQNYQPGTFEGWLHRITTNLFLDMVRRRGRIRMEALPEDYDRVPADEP
MSMEG_5072|M.smegmatis_MC2_155 RSVQNYQPGTFEGWLHRITTNLFLDMVRRRGRIRMEALPEDYDRVPAEDP
Mb1253|M.bovis_AF2122/97 RSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEALPEDYDRVPADEP
Rv1221|M.tuberculosis_H37Rv RSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEALPEDYDRVPADEP
MMAR_4216|M.marinum_M RSVQNYQPGTFEGWLHRITTNLFLDMVRRRSRIRMEALPEDYDRVPADDP
MUL_4519|M.ulcerans_Agy99 RSVQNYQPGTFEGWLHRITTNLFLDMVRRRSRIRMEALPEDYDRVPADDP
MLBr_01076|M.leprae_Br4923 RSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMDALPDDYDRVPADEP
MAV_1365|M.avium_104 RSVQNYQPGTFEGWLHRITTNLFLDMVRRRSRIRMEALPEDYERVPADEP
TH_0545|M.thermoresistible__bu RSLQNYQPGTFEGWLHRITTNLFLDMVRRRGRIRMESLPEDYDRVPGNSP
MAB_1362|M.abscessus_ATCC_1997 RSLQNYQPGTFEGWLHRITTNLFLDMVRRRGRIRMEALPEDYDRVPATDP
**:***************************.****::**:**:***. .*
Mvan_4496|M.vanbaalenii_PYR-1 NPEQIYHDSRLGPDLQAALDSLAPEFRAAVVLCDIEGLSYEEIGATLGVK
Mflv_2200|M.gilvum_PYR-GCK NPEQIYHDSRLGADLQAALDSLAPEFRAAVVLCDIEGLSYEEIGATLGVK
MSMEG_5072|M.smegmatis_MC2_155 NPEQIYHDSRLGADLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVK
Mb1253|M.bovis_AF2122/97 NPEQIYHDARLGPDLQAALASLPPEFRAAVVLCDIEGLSYEEIGATLGVK
Rv1221|M.tuberculosis_H37Rv NPEQIYHDARLGPDLQAALASLPPEFRAAVVLCDIEGLSYEEIGATLGVK
MMAR_4216|M.marinum_M NPEQIYHDSRLGPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVK
MUL_4519|M.ulcerans_Agy99 NPEQIYHDSRLGPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVK
MLBr_01076|M.leprae_Br4923 NPEQIYHDSRLGPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVK
MAV_1365|M.avium_104 NPEEIYHDSRLGPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVK
TH_0545|M.thermoresistible__bu NPEQIYHDARLGPDLQAALDSLPPDFRAAVVLCDIEGLSYEEIGATLGVK
MAB_1362|M.abscessus_ATCC_1997 DPEQIYHDAQLGADLQAALDSLAPEFRAAVVLCDIEGLSYEEIGATLDVK
:**:****::**.****** **.*:**********************.**
Mvan_4496|M.vanbaalenii_PYR-1 LGTVRSRIHRGRQALREY-LARHSDAGAGRDTARSA--------------
Mflv_2200|M.gilvum_PYR-GCK LGTVRSRIHRGRQALRDH-LARHSDVGAGRDTAKSA--------------
MSMEG_5072|M.smegmatis_MC2_155 LGTVRSRIHRGRQQLRDY-LAKHS-----SETAQSA--------------
Mb1253|M.bovis_AF2122/97 LGTVRSRIHRGRQALRDY-LAAHP-EHGEC-AVHVNPVR-----------
Rv1221|M.tuberculosis_H37Rv LGTVRSRIHRGRQALRDY-LAAHP-EHGEC-AVHVNPVR-----------
MMAR_4216|M.marinum_M LGTVRSRIHRGRQALRDY-LAAHP-EHSELSPRLVGTAR-----------
MUL_4519|M.ulcerans_Agy99 LGTVRSRIHRGRQALRDY-LAAHP-EHSELSPRLVGTAR-----------
MLBr_01076|M.leprae_Br4923 LGTVRSRIHRGRQALRDYLLTAHPRDGATTDATHVKSA------------
MAV_1365|M.avium_104 LGTVRSRIHRGRQALRDY-LAAHPDHDALRASLGVVSARPANVRAAIQRL
TH_0545|M.thermoresistible__bu LGTVRSRIHRGRQALRDY-LARHSQNSGQSATTS----------------
MAB_1362|M.abscessus_ATCC_1997 LGTVRSRIHRGRQAIREY-LAAHSSASALAAAE-----------------
************* :*:: *: *. .
Mvan_4496|M.vanbaalenii_PYR-1 --------------------------------------------------
Mflv_2200|M.gilvum_PYR-GCK --------------------------------------------------
MSMEG_5072|M.smegmatis_MC2_155 --------------------------------------------------
Mb1253|M.bovis_AF2122/97 --------------------------------------------------
Rv1221|M.tuberculosis_H37Rv --------------------------------------------------
MMAR_4216|M.marinum_M --------------------------------------------------
MUL_4519|M.ulcerans_Agy99 --------------------------------------------------
MLBr_01076|M.leprae_Br4923 --------------------------------------------------
MAV_1365|M.avium_104 CGLGLGIGRPVALHSKKANKAAIRMNGKELAMPDRGHVFRRAFSWLPAQF
TH_0545|M.thermoresistible__bu --------------------------------------------------
MAB_1362|M.abscessus_ATCC_1997 --------------------------------------------------
Mvan_4496|M.vanbaalenii_PYR-1 --------------------------------------------------
Mflv_2200|M.gilvum_PYR-GCK --------------------------------------------------
MSMEG_5072|M.smegmatis_MC2_155 --------------------------------------------------
Mb1253|M.bovis_AF2122/97 --------------------------------------------------
Rv1221|M.tuberculosis_H37Rv --------------------------------------------------
MMAR_4216|M.marinum_M --------------------------------------------------
MUL_4519|M.ulcerans_Agy99 --------------------------------------------------
MLBr_01076|M.leprae_Br4923 --------------------------------------------------
MAV_1365|M.avium_104 ASQSDAPVGAPRQFGSTEHLSVEAIAAFVDGELRMNAHLRAAHHLSQCAQ
TH_0545|M.thermoresistible__bu --------------------------------------------------
MAB_1362|M.abscessus_ATCC_1997 --------------------------------------------------
Mvan_4496|M.vanbaalenii_PYR-1 --------------------------------------------------
Mflv_2200|M.gilvum_PYR-GCK --------------------------------------------------
MSMEG_5072|M.smegmatis_MC2_155 --------------------------------------------------
Mb1253|M.bovis_AF2122/97 --------------------------------------------------
Rv1221|M.tuberculosis_H37Rv --------------------------------------------------
MMAR_4216|M.marinum_M --------------------------------------------------
MUL_4519|M.ulcerans_Agy99 --------------------------------------------------
MLBr_01076|M.leprae_Br4923 --------------------------------------------------
MAV_1365|M.avium_104 CAAEVDDQSRARAALRDSRPIRIPANLLGMLAEIPYESPDAPDRLADRDA
TH_0545|M.thermoresistible__bu --------------------------------------------------
MAB_1362|M.abscessus_ATCC_1997 --------------------------------------------------
Mvan_4496|M.vanbaalenii_PYR-1 -------
Mflv_2200|M.gilvum_PYR-GCK -------
MSMEG_5072|M.smegmatis_MC2_155 -------
Mb1253|M.bovis_AF2122/97 -------
Rv1221|M.tuberculosis_H37Rv -------
MMAR_4216|M.marinum_M -------
MUL_4519|M.ulcerans_Agy99 -------
MLBr_01076|M.leprae_Br4923 -------
MAV_1365|M.avium_104 RDRRRRP
TH_0545|M.thermoresistible__bu -------
MAB_1362|M.abscessus_ATCC_1997 -------