For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
MDEIESLIGLRPTPLTWPVVIAGDFLGVWDPPPSLPGAANHEISAPTARISCMLIERRDAAARLRRALHR APVVLLTGPRQAGKTTLSRLVGKSAPECTFDAENPVDATRLADPMLALSGLSGLITIDEAQRIPDLFPVL RVLVDRPVMPARFLILGSASPDLVGLASESLAGRVELVELSGLTVRDVGSSAADRLWLRGGLPPSFTARS NEDSAAWRDGYITTFLERDLAQLGVRIPAATMRRAWTMLAHYHGQLFSGAELARSLDVAQTTARRYLDAL TDALVVRQLTPWFANIGKRQRRSPKIYIRDTGLLHRLLGIDDRLALERNPKLGASWEGFVLEQLAALLAP NPLYYWRTQQDAELDLYVELSGRPYGFEIKRTSTPSISRSMRSALVDLQLARLAIVYPGEHRFPLSDTVV AVPADQILTTGSVDELLALLK
Operon Prediction Model: Genebank
Paralogs
species | id | gene | e-value | identity (len) | annotation |
M. bovis AF2122 / 97 | Mb2031c | - | - | 100% (441) | hypothetical protein Mb2031c |
M. bovis AF2122 / 97 | Mb0613c | - | 2e-30 | 31.52% (368) | hypothetical protein Mb0613c |
M. bovis AF2122 / 97 | Mb3205 | - | 8e-23 | 26.78% (422) | hypothetical protein Mb3205 |
Closest Orthologs (e-value cutoff: 1e-4)
species | id | gene | e-value | identity (len) | annotation |
M. gilvum PYR-GCK | Mflv_1328 | - | 1e-07 | 80.00% (30) | peptide chain release factor 3 |
M. tuberculosis H37Rv | Rv2008c | - | 0.0 | 100.00% (441) | hypothetical protein Rv2008c |
M. leprae Br4923 | - | - | - | - | - |
M. abscessus ATCC 19977 | - | - | - | - | - |
M. marinum M | - | - | - | - | - |
M. avium 104 | - | - | - | - | - |
M. smegmatis MC2 155 | MSMEG_1316 | prfC | 5e-07 | 73.33% (30) | peptide chain release factor 3 |
M. thermoresistible (build 8) | - | - | - | - | - |
M. ulcerans Agy99 | - | - | - | - | - |
M. vanbaalenii PYR-1 | Mvan_5464 | - | 3e-08 | 83.33% (30) | peptide chain release factor 3 |
CLUSTAL 2.0.9 multiple sequence alignment Mflv_1328|M.gilvum_PYR-GCK MTSANKIDGIMTNSTADASTTAAKRSDRVSNEAQRRRTFAVISHPDAGKS Mvan_5464|M.vanbaalenii_PYR-1 ----------MT-----TSTAAGPRADLVSAEARRRRTFAVISHPDAGKS MSMEG_1316|M.smegmatis_MC2_155 ----------MTDTPALAPSANTSLSRRIAAEATRRRTFAVISHPDAGKS Mb2031c|M.bovis_AF2122/97 ---------------------MDEIESLIGLRPTPLTWPVVIAG------ Rv2008c|M.tuberculosis_H37Rv ---------------------MDEIESLIGLRPTPLTWPVVIAG------ :. .. .**: Mflv_1328|M.gilvum_PYR-GCK TLTEALVLHAKAITEAGAIHGKQGRRATVSDWMEMEKARGISITSTALQF Mvan_5464|M.vanbaalenii_PYR-1 TLTEALVLHAKAITEAGAIHGKAGRRATVSDWMEMEKARGISITSTALQF MSMEG_1316|M.smegmatis_MC2_155 TLTEALALHARVITEAGAIHGKAGRRSTVSDWMEMEKARGISITSTVLQF Mb2031c|M.bovis_AF2122/97 ---DFLGVWDPPPSLPGAANHEISAPTARISCMLIERRDAAARLRRALH- Rv2008c|M.tuberculosis_H37Rv ---DFLGVWDPPPSLPGAANHEISAPTARISCMLIERRDAAARLRRALH- : * : : .** : : . :: . * :*: . : .*: Mflv_1328|M.gilvum_PYR-GCK PYTTQAGDTCVINLLDTPGHADFSEDTYRVLTAVDSAVMLIDAAKGLEPQ Mvan_5464|M.vanbaalenii_PYR-1 PYITQAGNTCVINLLDTPGHADFSEDTYRVLTAVDSAVMLIDAAKGLEPQ MSMEG_1316|M.smegmatis_MC2_155 PYR-----DSVINLLDTPGHADFSEDTYRVLTAVDCAVMLIDAAKGLEPQ Mb2031c|M.bovis_AF2122/97 --------RAPVVLLTGP--RQAGKTTLSRLVGKSAPECTFDAENPVDAT Rv2008c|M.tuberculosis_H37Rv --------RAPVVLLTGP--RQAGKTTLSRLVGKSAPECTFDAENPVDAT . : ** * : .: * *.. ... :** : ::. Mflv_1328|M.gilvum_PYR-GCK TLKLFQVCAHRRIPIITVINKWDRPGRHALELMDEINERIGLRPTPLTWP Mvan_5464|M.vanbaalenii_PYR-1 TLKLFQVCRHRRIPIITVVNKWDRPGRHALELMDEIQSQIGLRPTPLTWP MSMEG_1316|M.smegmatis_MC2_155 TLKLFQVCKHRGIPIITVINKWDRPGRHALELIDEIQTRIGLKPTPLTWP Mb2031c|M.bovis_AF2122/97 RLADPMLALS---------------GLSGLITIDEAQRIPDLFP------ Rv2008c|M.tuberculosis_H37Rv RLADPMLALS---------------GLSGLITIDEAQRIPDLFP------ * :. * .* :** : .* * Mflv_1328|M.gilvum_PYR-GCK VGIAGDFKGVLDRRTGKFIRFTRTAGGATAAPEEHIAAEAAHDAAGIDWD Mvan_5464|M.vanbaalenii_PYR-1 VGIAGDFKGVLDRRTGKFIRFTRTAGGATAAPEEHIDPDKAHDAAGVDWD MSMEG_1316|M.smegmatis_MC2_155 VGIAGDFKGVLDRRGGQFIRFTRTAGGATAAPEEHIPADAAHAAAGDDWD Mb2031c|M.bovis_AF2122/97 -----VLRVLVDR--------------PVMPARFLILGSASPDLVGLASE Rv2008c|M.tuberculosis_H37Rv -----VLRVLVDR--------------PVMPARFLILGSASPDLVGLASE :: ::** .. ... * . : .* : Mflv_1328|M.gilvum_PYR-GCK NAVEESELLEADGADFDPDSFLDCTSTPVLFTSAALNFGVNQLLDVLSAL Mvan_5464|M.vanbaalenii_PYR-1 NAVEESELLSADGADFDPDTFLDCTSTPVLFTSAALNFGVNQLLDVLAQL MSMEG_1316|M.smegmatis_MC2_155 TAVEESELLSADGGDYDRDAFLAGTASPTLFTSAALNFGVNQLLDVLVEL Mb2031c|M.bovis_AF2122/97 SLAGRVELVELSG-----------------LTVRDVGSSAADRLWLRGGL Rv2008c|M.tuberculosis_H37Rv SLAGRVELVELSG-----------------LTVRDVGSSAADRLWLRGGL . . . **:. .* :* :. .. : * : * Mflv_1328|M.gilvum_PYR-GCK APSPNGQLDVDGNRREAAAPFSAFVFKVQAGMDSAHRDRIAYARVCSGTF Mvan_5464|M.vanbaalenii_PYR-1 APSPNGALDVDGNRREAAAPFSAFVFKVQAGMDSAHRDRIAYARVCSGTF MSMEG_1316|M.smegmatis_MC2_155 APSPNGALDVDGERRDPDAPFSAFVFKVQAGMDSAHRDRIAYARVVSGTF Mb2031c|M.bovis_AF2122/97 PPSFTARSNEDSAAWR-DGYITTFLERDLAQLG---------VRIPAATM Rv2008c|M.tuberculosis_H37Rv PPSFTARSNEDSAAWR-DGYITTFLERDLAQLG---------VRIPAATM .** .. : *. . :::*: : * :. .*: :.*: Mflv_1328|M.gilvum_PYR-GCK ERGDVLTHATTGKPFVTKYAQSVFGRERSTLDTAWPGDVIGLANANALRP Mvan_5464|M.vanbaalenii_PYR-1 ERGDVLTHASTGKPFVTKYAQSVFGRERSTLDTAWPGDVIGLANAAALRP MSMEG_1316|M.smegmatis_MC2_155 ERGDVLTHAATGKPFVTKYAQSVFGQQRSTLDDAWPGDVIGLANAQALRP Mb2031c|M.bovis_AF2122/97 RRAWTMLAHYHGQLFSG----AELARSLDVAQTTARRYLDALTDALVVRQ Rv2008c|M.tuberculosis_H37Rv RRAWTMLAHYHGQLFSG----AELARSLDVAQTTARRYLDALTDALVVRQ .*. .: *: * : :.:. .. : : : .*::* .:* Mflv_1328|M.gilvum_PYR-GCK GDTLYQDVAVQFPPIPSFSPEHFSVARGTDPSKHKQFRKGIEQLDQEGVV Mvan_5464|M.vanbaalenii_PYR-1 GDTLYQDIAVQYPPIPSFSPEHFSVARGTDPSKHKQFRKGIEQLDQEGVV MSMEG_1316|M.smegmatis_MC2_155 GDTLYRDVPVQFPPIPSFSPEHFAVARGTDPSKHKQFRRGIEQLEQEGVV Mb2031c|M.bovis_AF2122/97 LTPWFANIGKRQRRSPKIY------IRDTGLLHRLLGIDDRLALERNPKL Rv2008c|M.tuberculosis_H37Rv LTPWFANIGKRQRRSPKIY------IRDTGLLHRLLGIDDRLALERNPKL . : :: : *.: *.*. :: . *::: : Mflv_1328|M.gilvum_PYR-GCK QVLRSDRRGDQAPVLAAVGPMQFEVAAHRMAAEFSAPIELESLPYQVARI Mvan_5464|M.vanbaalenii_PYR-1 QVLRSDRRGEQAPVLAAVGPMQFEVASHRMAAEFSAPIALESLPYTIARI MSMEG_1316|M.smegmatis_MC2_155 QVLRSDKRGEQAPVFAAVGPMQFEVASHRMATELSAPISLEPLPYQVARI Mb2031c|M.bovis_AF2122/97 GASWEGFVLEQLAALLAPNPLYYWRTQQDAELDLYVELSGRPYGFEIKRT Rv2008c|M.tuberculosis_H37Rv GASWEGFVLEQLAALLAPNPLYYWRTQQDAELDLYVELSGRPYGFEIKRT . .. :* ..: * .*: : : : :: . : .. : : * Mflv_1328|M.gilvum_PYR-GCK CDPADAEALQKMAAVEVFTRTDGVMLAVFSTKWRLETVQRDNPDIMLREL Mvan_5464|M.vanbaalenii_PYR-1 CDPADAEALAKMAAVEVFTRTDGVMLAVFSTKWRLETVQRENPAMELREL MSMEG_1316|M.smegmatis_MC2_155 VDPEDADFMNRQPSAEVMTRSDGVMLVLFSTPWRLEGFQRDNPDIKLRSL Mb2031c|M.bovis_AF2122/97 STPSISRSMRSALVDLQLARLAIVYPGEHRFPLSDTVVAVPADQILTTGS Rv2008c|M.tuberculosis_H37Rv STPSISRSMRSALVDLQLARLAIVYPGEHRFPLSDTVVAVPADQILTTGS * : : ::* * . . : Mflv_1328|M.gilvum_PYR-GCK IAAGQE--- Mvan_5464|M.vanbaalenii_PYR-1 VAAGQ---- MSMEG_1316|M.smegmatis_MC2_155 VAS------ Mb2031c|M.bovis_AF2122/97 VDELLALLK Rv2008c|M.tuberculosis_H37Rv VDELLALLK :