For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
VRYTTPVRAAVYLRISEDRSGEQLGVARQREDCLKLCGQRKWVPVEYLDNDVSASTGKRRPAYEQMLADI TAGKIAAVVAWDLDRLHRRPIELEAFMSLADEKRLALATVAGDVDLATPQGRLVARLKGSVAAHETEHKK ARQRRAARQKAERGHPNWSKAFGYLPGPNGPEPDPRTAPLVKQAYADILAGASLGDVCRQWNDAGAFTIT GRPWTTTTLSKFLRKPRNAGLRAYKGARYGPVDRDAIVGKAQWSPLVDEATFWAAQAVLDAPGRAPGRKS VRRHLLTGLAGCGKCGNHLAGSYRTDGQVVYVCKACHGVAILADNIEPILYHIVAERLAMPDAVDLLRRE IHDAAEAETIRLELETLYGELDRLAVERAEGLLTARQVKISTDIVNAKITKLQARQQDQERLRVFDGIPL GTPQVAGMIAELSPDRFRAVLDVLAEVVVQPVGKSGRIFNPERVQVNWR
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | Mb1612c | - | - | 100% (469) | phiRv1 integrase |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. gilvum PYR-GCK | Mflv_3036 | - | 4e-07 | 23.45% (499) | recombinase |
| M. tuberculosis H37Rv | Rv1586c | - | 0.0 | 100.00% (469) | phiRv1 integrase |
| M. leprae Br4923 | - | - | - | - | - |
| M. abscessus ATCC 19977 | MAB_2101 | - | 1e-09 | 23.80% (479) | recombinase |
| M. marinum M | MMAR_2129 | - | 3e-53 | 33.27% (496) | site-specific integrase |
| M. avium 104 | MAV_3790 | - | 3e-57 | 34.78% (483) | integrase/recombinase |
| M. smegmatis MC2 155 | - | - | - | - | - |
| M. thermoresistible (build 8) | TH_3834 | - | 1e-112 | 50.00% (450) | PUTATIVE putative short-chain dehydrogenase/reductase SDR |
| M. ulcerans Agy99 | MUL_3230 | - | 3e-05 | 24.01% (279) | prophage integrase |
| M. vanbaalenii PYR-1 | Mvan_1448 | - | 3e-64 | 35.55% (481) | recombinase |
CLUSTAL 2.0.9 multiple sequence alignment
Mflv_3036|M.gilvum_PYR-GCK -----------MSLRFAFYGRVSTEDAQDPDASRSWQKRRATDLITPHGG
MAB_2101|M.abscessus_ATCC_1997 -----------MSLRFAFYGRVSTEDAQDPEASRSWQKRRAIDLISPHGG
Mb1612c|M.bovis_AF2122/97 -------MRYTTPVRAAVYLRIS-EDRSGEQLGVARQREDCLKLCGQRKW
Rv1586c|M.tuberculosis_H37Rv -------MRYTTPVRAAVYLRIS-EDRSGEQLGVARQREDCLKLCGQRKW
TH_3834|M.thermoresistible__bu --------------------------------------------------
MMAR_2129|M.marinum_M MPARKSAGQRVGVGSAAIYARIS-SDVEGTGLGVARQLEDCRKLAEDRGW
MAV_3790|M.avium_104 MGKAKTPAQRVGARSAAIYARIS-ADVEGTGLGVARQLEDCRKLAAERGW
Mvan_1448|M.vanbaalenii_PYR-1 -------------MRAVIYTRIS-DDQAGRGLGVARQLEDCQALADKLGW
MUL_3230|M.ulcerans_Agy99 ---MGVKIDREFIEPGHSAKTLDERPVFKELLAYVHQRRGIKYVIVYMRS
Mflv_3036|M.gilvum_PYR-GCK VLAADYFDVGQSRSLPWKRRPEASRLLIDVASRDRNFDAVVIGEPARAFY
MAB_2101|M.abscessus_ATCC_1997 VLAADYFDIGQSRSLPWKRRPEASRLLADVTSRDRGFDAVVIGEPARAFY
Mb1612c|M.bovis_AF2122/97 VP-VEYLDNDVS-ASTGKRRPAYEQMLADITAGK--IAAVVAWDLDRLHR
Rv1586c|M.tuberculosis_H37Rv VP-VEYLDNDVS-ASTGKRRPAYEQMLADITAGK--IAAVVAWDLDRLHR
TH_3834|M.thermoresistible__bu -------------------------MLADIRDGL--VRAVVVWDLDRLHR
MMAR_2129|M.marinum_M PVGAEYVDNDVS-AFSGKPRREYARMLADLASGD--RDAVIVYNLDRLHR
MAV_3790|M.avium_104 PIGDEYVDNDVS-AYSGKPRREYARMLDDLKSGA--RDAVIVYNLDRLHR
Mvan_1448|M.vanbaalenii_PYR-1 QVVNHFDDNDIS-AYSGKRRPGFEAMLEAMKAGQ--FDALLCFHTDRLYR
MUL_3230|M.ulcerans_Agy99 RAFRNHFDAAIVQTKLKKLGVRLVSAKEDFGEGPTAVAMEGMLDIMNGLQ
. . .
Mflv_3036|M.gilvum_PYR-GCK GPQFALTFPVLTHHGVGLWVPEVGGAVDPGSEAHDLVMTLFGGMSKGERA
MAB_2101|M.abscessus_ATCC_1997 GPQFALTFPVLTHYGVGLWVPEVGGAVDPGSEAHDLVMTLFGGMSKGERA
Mb1612c|M.bovis_AF2122/97 RPIELEAFMSLADEKRLALATVAG-DVDLATPQGRLVARLKGSVAAHETE
Rv1586c|M.tuberculosis_H37Rv RPIELEAFMSLADEKRLALATVAG-DVDLATPQGRLVARLKGSVAAHETE
TH_3834|M.thermoresistible__bu RPLELEGFMALADERGLKLATVSG-DVDLSTAQGRLIARLKGSVAAHEIE
MMAR_2129|M.marinum_M RPVELEEFVTLCESVGVRDVATVTADIDLGNDDGLFMARIFAAFAAKESG
MAV_3790|M.avium_104 RPVELEDFVTLCESVGVRDVATVTADIDLGNDDGLFMARIFAAFAAKESG
Mvan_1448|M.vanbaalenii_PYR-1 NMSDLERVIELADARRVEIRTVQGGTLDLSTSAGRMVARILGSVARQESE
MUL_3230|M.ulcerans_Agy99 NTLQGLDVQTKMRNKAKAGGTVSLAKLGYKNVRVDYEGRQINTIALDPER
. . :. . .:
Mflv_3036|M.gilvum_PYR-GCK RIQMRVRTAMSALAQDTNRYLGGRPPYGYRLVDAGPHPNAAKANLGQRLH
MAB_2101|M.abscessus_ATCC_1997 RIQMRVRTAMSALAQDTTRYLGGRPPYGYQLVDAGPHPNPAKASLGQRLH
Mb1612c|M.bovis_AF2122/97 HKKARQRRAARQKAERG-HPN-WSKAFGYLPGPN----------------
Rv1586c|M.tuberculosis_H37Rv HKKARQRRAARQKAERG-HPN-WSKAFGYLPGPN----------------
TH_3834|M.thermoresistible__bu HKRARQLRAAQQKAERG-VPQ-WKRAFGFADG------------------
MMAR_2129|M.marinum_M RKSARIRRKMLQNAQAG-LPHGSARPFGYEAD------------------
MAV_3790|M.avium_104 RKSARIRRKMLQNAEKG-LPHGPARPFGYEPD------------------
Mvan_1448|M.vanbaalenii_PYR-1 HSSERRKRANVQRAANG-DWVAARRPFGYTMD------------------
MUL_3230|M.ulcerans_Agy99 APLVRKAWELYATGEYSVERLEATMADLGLTARP----------------
* . .
Mflv_3036|M.gilvum_PYR-GCK RLEPDPATSSVVERIYRMYADGAGLRYIAQELTDDG-----------VPS
MAB_2101|M.abscessus_ATCC_1997 RLEPDPETAPTVERIYRMYADGAGLRFIAQQLTDDG-----------VPS
Mb1612c|M.bovis_AF2122/97 GPEPDPRTAPLVKQAYADILAGASLGDVCRQWNDAG--------------
Rv1586c|M.tuberculosis_H37Rv GPEPDPRTAPLVKQAYADILAGASLGDVCRQWNDAG--------------
TH_3834|M.thermoresistible__bu -YVADEITAPLVKEMYAHVLAGGSLSGLARELNARGDWAWGQKWVKPKDD
MMAR_2129|M.marinum_M KITVRESEAAVVREMVDRYLAGQSLRSLTIWLNESQ--------------
MAV_3790|M.avium_104 KITLRPEEAKIVREMVDRYLAGASIRSLTIWLSDTG--------------
Mvan_1448|M.vanbaalenii_PYR-1 GEPLEP-EATAIRSAITDVLSGKSVRAVARDWNDAG--------------
MUL_3230|M.ulcerans_Agy99 -NRRSPKGTPVSASKLHRMLSDPYYVGFVTYKGDMYPG------------
: . .
Mflv_3036|M.gilvum_PYR-GCK PSQYDPARNRHRDPRGWSHSAIRAILDNPTYLGVRVWGKQEKYEVLVDPD
MAB_2101|M.abscessus_ATCC_1997 PSQYDPARNRHRDPRGWSHSAIRAILDNPAYRGIRVWGKQEKYEVLLNPD
Mb1612c|M.bovis_AF2122/97 -------AFTITGR-PWTTTTLSKFLRKPRNAGLRAYKGA----------
Rv1586c|M.tuberculosis_H37Rv -------AFTITGR-PWTTTTLSKFLRKPRNAGLRAYKGA----------
TH_3834|M.thermoresistible__bu YGETIKSAEVVCQRQPWSASTLSLFLRSPRNAGLRTYN------------
MMAR_2129|M.marinum_M -------ITPS-VAKSWQTSAVRQVLSSGRIAGLREHRG-----------
MAV_3790|M.avium_104 -------VAPP-ASKSWQTTTVRNILASGRIAGLREHHG-----------
Mvan_1448|M.vanbaalenii_PYR-1 -------LATTGKADKWTATSVRRVLLRPRYAALVVHQG-----------
MUL_3230|M.ulcerans_Agy99 ------RHEPIVSQALFDRAQDVLHARSARGQRDRVHQHYLKG-------
: :
Mflv_3036|M.gilvum_PYR-GCK DVAAGYETRMRWRDQADWIAPDRRTHEALIHDDLAQAVRLRTLARRGPGL
MAB_2101|M.abscessus_ATCC_1997 DVAAGYETRMRWRDRADWIAPDRRTHEELIPDELAQAVRLRMQARRGPGR
Mb1612c|M.bovis_AF2122/97 ----------RYGPVDRDAIVGKAQWSPLVDEATFWAAQAVLD---APGR
Rv1586c|M.tuberculosis_H37Rv ----------RYGPVDRDAIVGKAQWSPLVDEATFWAAQAVLD---APGR
TH_3834|M.thermoresistible__bu ----------RELVLDKDGQPVRGAWEPLVDEDTWRAVQSVLD---APGR
MMAR_2129|M.marinum_M ------------------EVIGPAVWPAIITPAERDRVLARMA---ARS-
MAV_3790|M.avium_104 ------------------EVIGAAAWPAIITAGERDRILARMT---ARS-
Mvan_1448|M.vanbaalenii_PYR-1 ------------------KVVGPGSWTPLIDTDTHHGIVAYLN---DPAR
MUL_3230|M.ulcerans_Agy99 -----------ALFCQRCHHAGRTSRMIYTEVTGNGGKYAYYACRGRQEG
Mflv_3036|M.gilvum_PYR-GCK VCSRESIVPYALRGLLFCAACGRRMQGAARVGKQTTRILYR-------CE
MAB_2101|M.abscessus_ATCC_1997 VCSRESTVPYALRGLLFCAACGRRMQGAARPGKQTTRILYR-------CE
Mb1612c|M.bovis_AF2122/97 APGRKSVRRHLLTGLAGCGKCGNHLAGSYRTD------------------
Rv1586c|M.tuberculosis_H37Rv APGRKSVRRHLLTGLAGCGKCGNHLAGSYRTD------------------
TH_3834|M.thermoresistible__bu APGRKSVRQHLLTGVLVCGKCEGSLAGQWVMQPTGGEPGRSKAGRVKEPT
MMAR_2129|M.marinum_M VTKSRTARTYLLSGLLRCRRCGNRLYSQARHSNPQNRVRR----------
MAV_3790|M.avium_104 VTKTRAPRTYLLSGMLRCGRCGNRLFSQARHNNPTNRVRR----------
Mvan_1448|M.vanbaalenii_PYR-1 KGKVGFERKYQGSGVYRCGVCGTPVITHMSSGGSPNRVARR---------
MUL_3230|M.ulcerans_Agy99 LCDLPHLRVELIEKAIAEHYTTLRLPDDFIQDVRRLLADTVS-----DSQ
:
Mflv_3036|M.gilvum_PYR-GCK LGKSRSVPADLSDHPRTVYLREDEVTVQLDEWIATLADPDDLARGQDADS
MAB_2101|M.abscessus_ATCC_1997 FGKSRSVPVDLSDHPRTVYLREDAVTARLDEWIATLADPEDLARGQDVDP
Mb1612c|M.bovis_AF2122/97 GQ----VVYVCKACHGVAILADNIEPILYHIVAERLAMPDAVDLLRR-EI
Rv1586c|M.tuberculosis_H37Rv GQ----VVYVCKACHGVAILADNIEPILYHIVAERLAMPDAVDLLRR-EI
TH_3834|M.thermoresistible__bu GQKRHVITYSCKTCRGVSMRAEHIEPLVYGVVGARLAEPDALDLLRS-EQ
MMAR_2129|M.marinum_M --YVCLKGPDHGGCGRLTVVAAPVEELLTEAVLTRLDSAQLADALAGKAN
MAV_3790|M.avium_104 --YVCLKGPDHGGCGRLTVVALPVEELLTDAVLTRLDSPQLAGALAGRSS
Mvan_1448|M.vanbaalenii_PYR-1 -AYACPNGFHVRRQG------DGLDTYVDTIVIGRLSQPDAAELLSTLSN
MUL_3230|M.ulcerans_Agy99 ANTRELHASMTRRLKQIDVRESPLIDLAADGEMPRDKIRAKLNALKMERA
Mflv_3036|M.gilvum_PYR-GCK AARTGYAALQRQLSEANRKVAALVNAVESG-VAVEDLTAALRRRTAERDE
MAB_2101|M.abscessus_ATCC_1997 AAGPGYAALQRQLSEANAKVAALITAVESG-VAVEDLTAALRQRTAERDE
Mb1612c|M.bovis_AF2122/97 HDAAEAETIRLELETLYGELDRLAVERAEG-LLTARQVKISTDIVNAK-I
Rv1586c|M.tuberculosis_H37Rv HDAAEAETIRLELETLYGELDRLAVERAEG-LLTARQVKISTDIVNAK-I
TH_3834|M.thermoresistible__bu HDVEAAEQVRQQRSALNQRLLEIADERADG-LLTGQQAARATARILDR-L
MMAR_2129|M.marinum_M AD-ADVTALAAQVDTDQGRLDELAGLYADG-AITAREWIAARDPITER-I
MAV_3790|M.avium_104 VD-ADVAALAAQLEADQARLDELAGLYAEG-AVSAREWIAARDPITDR-I
Mvan_1448|M.vanbaalenii_PYR-1 SEGVDIGALHAQRTALQARQEELASLFADG-AISAPQLKLGSAKLTNA-L
MUL_3230|M.ulcerans_Agy99 NIEASLASTSEELAIGASLLRDALHLVEDPQSLYANVPNEVRRHLNQTFY
: .
Mflv_3036|M.gilvum_PYR-GCK LKARLERAERPLAMSAAQISELVEELGGLAAVLGEAT-GAERAQVYASLG
MAB_2101|M.abscessus_ATCC_1997 LRARVERVERPRAMCAAEISELVKELGGLSVILGAAT-GAERAEVYASLG
Mb1612c|M.bovis_AF2122/97 TKLQARQQDQER---LRVFDGIPLGTPQVAGMIAELS-PDRFRAVLDVLA
Rv1586c|M.tuberculosis_H37Rv TKLQARQQDQER---LRVFDGIPLGTPQVAGMIAELS-PDRFRAVLDVLA
TH_3834|M.thermoresistible__bu AALQLVDADQER---LRVLDGLPLGTPDAEGALEGLT-PDRFRAVLGVVC
MMAR_2129|M.marinum_M TAARRDIAAVTD---TTAVFELVGTGGALRTEWDGLD-LGRQQAIIKAVL
MAV_3790|M.avium_104 ARARRDIAKATD---TSAVMDLVGCGEVLRGQWDDLD-IDRQQAIIKSVL
Mvan_1448|M.vanbaalenii_PYR-1 ETLERDLAAATQGNPASALLQDVNGVAQLEGRWAELS-PDLRGKVIDQLM
MUL_3230|M.ulcerans_Agy99 ERFYIDDTEVANDQRTPLFAELEEAAHVFAQHRAKGNSVPTQSDAVAAMN
. :
Mflv_3036|M.gilvum_PYR-GCK LRLDYDPHLRQVTATADLSRVAGCVRGGT----------------
MAB_2101|M.abscessus_ATCC_1997 LRLDYDPHLRRVTATADLSRVAGCVRGGT----------------
Mb1612c|M.bovis_AF2122/97 EVVVQPVGKSGR--IFNPERVQVNWR-------------------
Rv1586c|M.tuberculosis_H37Rv EVVVQPVGKSGR--IFNPERVQVNWR-------------------
TH_3834|M.thermoresistible__bu TITVLPIGRGRRKGVEHRDRLQIDWK-------------------
MMAR_2129|M.marinum_M DHAVIAPGTPGAR-RLDIDRVAPIWRV------------------
MAV_3790|M.avium_104 DHAVIAPGTPGSR-KLDINRVQPHWRI------------------
Mvan_1448|M.vanbaalenii_PYR-1 TVTINRS-PKGLR-RFDPDYVTVDWKQG-----------------
MUL_3230|M.ulcerans_Agy99 EENPRQAGAPRSTGTESLTLAGVFSVTGLSKNVLVGLTGFEPATT