For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
VPAYRVPDKQGCLAGQHPSRICDRPRVLRMRDASFCCKPSDPSDKQVRAVPTGKVKWYDSDKGFGFLSQE EGEDVYVRSSALPAGVEGLKAGQRVEFGIASGRRGPQALSLKLLDPPPSLTRTRHEAVEHKHSPDELHGM VEDMITLLESTVQPELRKGRYPDRKTARRVSEVVKAVARELDA*
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. ulcerans Agy99 | MUL_0279 | cspB | - | 100% (184) | cold shock-like protein B CspB |
| M. ulcerans Agy99 | MUL_4224 | cspA_1 | 4e-09 | 40.00% (65) | cold shock protein A CspA_1 |
| M. ulcerans Agy99 | MUL_0392 | cspA | 6e-09 | 39.34% (61) | cold shock protein a, CspA |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | Mb0895 | cspB | 3e-64 | 87.41% (135) | cold shock-like protein B CspB |
| M. gilvum PYR-GCK | Mflv_1707 | - | 2e-64 | 85.29% (136) | cold-shock DNA-binding domain-containing protein |
| M. tuberculosis H37Rv | Rv0871 | cspB | 3e-64 | 87.41% (135) | cold shock-like protein B CspB |
| M. leprae Br4923 | MLBr_02147 | cspB | 1e-66 | 90.44% (136) | putative cold shock protein |
| M. abscessus ATCC 19977 | MAB_0872 | - | 1e-60 | 81.02% (137) | cold shock-like protein B CspB |
| M. marinum M | MMAR_4661 | cspB | 1e-72 | 99.25% (134) | cold shock-like protein B CspB |
| M. avium 104 | MAV_1000 | - | 9e-68 | 91.85% (135) | cold shock DNA-binding domain-containing protein |
| M. smegmatis MC2 155 | MSMEG_5696 | - | 1e-66 | 84.62% (143) | cold-shock DNA-binding domain-containing protein |
| M. thermoresistible (build 8) | TH_1069 | cspB | 1e-57 | 77.21% (136) | PROBABLE COLD SHOCK-LIKE PROTEIN B CSPB |
| M. vanbaalenii PYR-1 | Mvan_5045 | - | 9e-68 | 91.18% (136) | cold-shock DNA-binding domain-containing protein |
CLUSTAL 2.0.9 multiple sequence alignment
MUL_0279|M.ulcerans_Agy99 MVPAYRVPDKQGCLAGQHPSRICDRPRVLRMRDASFCCKPSDPSDKQVRA
MMAR_4661|M.marinum_M --------------------------------------------------
MLBr_02147|M.leprae_Br4923 --------------------------------------------------
MAV_1000|M.avium_104 --------------------------------------------------
Mflv_1707|M.gilvum_PYR-GCK --------------------------------------------------
Mvan_5045|M.vanbaalenii_PYR-1 --------------------------------------------------
MSMEG_5696|M.smegmatis_MC2_155 -------------------------------------MFLLADNDERVRT
MAB_0872|M.abscessus_ATCC_1997 --------------------------------------------------
Mb0895|M.bovis_AF2122/97 --------------------------------------------------
Rv0871|M.tuberculosis_H37Rv --------------------------------------------------
TH_1069|M.thermoresistible__bu --------------------------------------------------
MUL_0279|M.ulcerans_Agy99 VPTGKVKWYDSDKGFGFLSQE-EGEDVYVRSSALPAGVEGLKAGQRVEFG
MMAR_4661|M.marinum_M MPTGKVKWYDSDKGFGFLSQE-EGEDVYVRSSALPAGVEGLKAGQRVEFG
MLBr_02147|M.leprae_Br4923 MPTGKVKWYDADKGFGFLSQE-DGEDVYVRSSALPAGVEGLKAGQRVEFG
MAV_1000|M.avium_104 MPTGKVKWYDADKGFGFLSQE-DGEDVYVRSSALPAGVEGLKAGQRVEFG
Mflv_1707|M.gilvum_PYR-GCK MPTGRVKWYDAEKGFGFLSQE-EGEDVYVRSSALPAGVEGLKAGQRVEFG
Mvan_5045|M.vanbaalenii_PYR-1 MPTGRVKWYDAEKGFGFLSQE-DGEDVYVRSSALPAGVEGLKAGQRVEFG
MSMEG_5696|M.smegmatis_MC2_155 VPTGKVKWYDAEKGFGFLSQE-DGEDVYVRSSALPAGVEALKSGQRVEFG
MAB_0872|M.abscessus_ATCC_1997 MPTGKVKWYDAEKGFGFLSQE-DGEDVYVRSSALPAGVEGLKAGQKVEFG
Mb0895|M.bovis_AF2122/97 MPTGKVKWYDPDKGFGFLSQE-GGEDVYVRSSALPTGVEALKAGQRVEFG
Rv0871|M.tuberculosis_H37Rv MPTGKVKWYDPDKGFGFLSQE-GGEDVYVRSSALPTGVEALKAGQRVEFG
TH_1069|M.thermoresistible__bu VPTGRVKWYDAEKGFGFLSQDDGGEDVYVRASALPEGVETLKSGQRVEFG
:***:*****.:********: *******:**** *** **:**:****
MUL_0279|M.ulcerans_Agy99 IASGRRGPQALSLKLLDPPPSLT-RTRHEA---VEHKHSPDELHGMVEDM
MMAR_4661|M.marinum_M IASGRRGPQALSLKLLDPPPSLT-RTRREA---VEHKHSPDELHGMVEDM
MLBr_02147|M.leprae_Br4923 VASGRRGPQALSLKLIDPPPSFARQVRREAL--AEHRHSPDELHGMVEDM
MAV_1000|M.avium_104 IASGRRGPQALSLKLIEPPPSLT-KARREGP--AEHKHSPDELHGMVEDM
Mflv_1707|M.gilvum_PYR-GCK VAAGRRGPQALQVKLIDPPPSVS-RNRREAAAAE-HKHTPDELHGMVEDM
Mvan_5045|M.vanbaalenii_PYR-1 VAAGRRGPQALSLKLIDPPPSLT-RTRREAAAVE-HKHSPDELHGMVEDM
MSMEG_5696|M.smegmatis_MC2_155 VAAGRRGPQALSLKLIDPPPSLS-RARREAERPE-HKHTPDELHGMVEDM
MAB_0872|M.abscessus_ATCC_1997 MAAGRRGPQALSLKLIDAPPSVQ-KTRRESSGPVNHKHTTDELHGMIEDM
Mb0895|M.bovis_AF2122/97 IASGRRGPQALSLRLIEPPPSLS-RPRREP--AAEHKHSPDELHGMVEDM
Rv0871|M.tuberculosis_H37Rv IASGRRGPQALSLRLIEPPPSLS-RPRREP--AAEHKHSPDELHGMVEDM
TH_1069|M.thermoresistible__bu IATGRRGPQALSVQIIDPPPSLS-RARRQAA-AAERKHSPDELHGLIEDM
:*:********.:::::.***. : *:: ::*:.*****::***
MUL_0279|M.ulcerans_Agy99 ITLLESTVQPELRKGRYPDRKTARRVSEVVKAVARELDA
MMAR_4661|M.marinum_M ITLLESTVQPELRKGRYPDRKTARRVSEVVKAVARELDA
MLBr_02147|M.leprae_Br4923 ITLLESTVQPELRKGRYPDRKTARRVSEVVKAVAREFDA
MAV_1000|M.avium_104 ITLLESTVQPELRKGRYPDRKTARRVSEVVRAVARELDA
Mflv_1707|M.gilvum_PYR-GCK ITLLEGAVQPELRKGKYPDRKVARRVSEVVKAVARELDA
Mvan_5045|M.vanbaalenii_PYR-1 ITLLESAVQPELRKGRYPDRKVARRVSEVVKAVARELDA
MSMEG_5696|M.smegmatis_MC2_155 ITLLESAVQPELRKGRYPDRKVARRVSEVVRAVARELDA
MAB_0872|M.abscessus_ATCC_1997 ITLLEGTVQTELRKGRYPDRKIARKVSEVVRAVASELDA
Mb0895|M.bovis_AF2122/97 ITLLESTVQPELRKGRYPDRKTARRVAEVVRAVAREFES
Rv0871|M.tuberculosis_H37Rv ITLLESTVQPELRKGRYPDRKTARRVAEVVRAVAREFES
TH_1069|M.thermoresistible__bu ITLLESAVQPDLRKGRYPDRKTARRVAEVVRAVAAELEH
*****.:**.:****:***** **:*:***:*** *::