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M. gilvum PYR-GCK Mflv_1707 (-)

annotation: cold-shock DNA-binding domain-containing protein
coordinates: 1776907 - 1777317
length: 136

VPTGRVKWYDAEKGFGFLSQEEGEDVYVRSSALPAGVEGLKAGQRVEFGVAAGRRGPQALQVKLIDPPPS
VSRNRREAAAAEHKHTPDELHGMVEDMITLLEGAVQPELRKGKYPDRKVARRVSEVVKAVARELDA

Operon Prediction Model: Genebank

Paralogs

species id gene e-value identity (len) annotation
M. gilvum PYR-GCK Mflv_1707 - - 100% (136) cold-shock DNA-binding domain-containing protein
M. gilvum PYR-GCK Mflv_5230 - 5e-11 46.88% (64) cold-shock DNA-binding domain-containing protein
M. gilvum PYR-GCK Mflv_1392 - 2e-10 43.28% (67) cold-shock DNA-binding domain-containing protein

Closest Orthologs (e-value cutoff: 1e-4)

species id gene e-value identity (len) annotation
M. bovis AF2122 / 97 Mb0895 cspB 4e-61 80.88% (136) cold shock-like protein B CspB
M. tuberculosis H37Rv Rv0871 cspB 4e-61 80.88% (136) cold shock-like protein B CspB
M. leprae Br4923 MLBr_02147 cspB 4e-65 85.29% (136) putative cold shock protein
M. abscessus ATCC 19977 MAB_0872 - 6e-62 81.75% (137) cold shock-like protein B CspB
M. marinum M MMAR_4661 cspB 4e-65 86.03% (136) cold shock-like protein B CspB
M. avium 104 MAV_1000 - 5e-64 84.56% (136) cold shock DNA-binding domain-containing protein
M. smegmatis MC2 155 MSMEG_5696 - 2e-67 89.71% (136) cold-shock DNA-binding domain-containing protein
M. thermoresistible (build 8) TH_1069 cspB 7e-61 80.15% (136) PROBABLE COLD SHOCK-LIKE PROTEIN B CSPB
M. ulcerans Agy99 MUL_0279 cspB 1e-64 85.29% (136) cold shock-like protein B CspB
M. vanbaalenii PYR-1 Mvan_5045 - 7e-70 92.65% (136) cold-shock DNA-binding domain-containing protein

CLUSTAL 2.0.9 multiple sequence alignment


Mflv_1707|M.gilvum_PYR-GCK          --------------------------------------------------
Mvan_5045|M.vanbaalenii_PYR-1       --------------------------------------------------
MSMEG_5696|M.smegmatis_MC2_155      -------------------------------------MFLLADNDERVRT
MAB_0872|M.abscessus_ATCC_1997      --------------------------------------------------
MLBr_02147|M.leprae_Br4923          --------------------------------------------------
MAV_1000|M.avium_104                --------------------------------------------------
MMAR_4661|M.marinum_M               --------------------------------------------------
MUL_0279|M.ulcerans_Agy99           MVPAYRVPDKQGCLAGQHPSRICDRPRVLRMRDASFCCKPSDPSDKQVRA
Mb0895|M.bovis_AF2122/97            --------------------------------------------------
Rv0871|M.tuberculosis_H37Rv         --------------------------------------------------
TH_1069|M.thermoresistible__bu      --------------------------------------------------
                                                                                      

Mflv_1707|M.gilvum_PYR-GCK          MPTGRVKWYDAEKGFGFLSQE-EGEDVYVRSSALPAGVEGLKAGQRVEFG
Mvan_5045|M.vanbaalenii_PYR-1       MPTGRVKWYDAEKGFGFLSQE-DGEDVYVRSSALPAGVEGLKAGQRVEFG
MSMEG_5696|M.smegmatis_MC2_155      VPTGKVKWYDAEKGFGFLSQE-DGEDVYVRSSALPAGVEALKSGQRVEFG
MAB_0872|M.abscessus_ATCC_1997      MPTGKVKWYDAEKGFGFLSQE-DGEDVYVRSSALPAGVEGLKAGQKVEFG
MLBr_02147|M.leprae_Br4923          MPTGKVKWYDADKGFGFLSQE-DGEDVYVRSSALPAGVEGLKAGQRVEFG
MAV_1000|M.avium_104                MPTGKVKWYDADKGFGFLSQE-DGEDVYVRSSALPAGVEGLKAGQRVEFG
MMAR_4661|M.marinum_M               MPTGKVKWYDSDKGFGFLSQE-EGEDVYVRSSALPAGVEGLKAGQRVEFG
MUL_0279|M.ulcerans_Agy99           VPTGKVKWYDSDKGFGFLSQE-EGEDVYVRSSALPAGVEGLKAGQRVEFG
Mb0895|M.bovis_AF2122/97            MPTGKVKWYDPDKGFGFLSQE-GGEDVYVRSSALPTGVEALKAGQRVEFG
Rv0871|M.tuberculosis_H37Rv         MPTGKVKWYDPDKGFGFLSQE-GGEDVYVRSSALPTGVEALKAGQRVEFG
TH_1069|M.thermoresistible__bu      VPTGRVKWYDAEKGFGFLSQDDGGEDVYVRASALPEGVETLKSGQRVEFG
                                    :***:*****.:********:  *******:**** *** **:**:****

Mflv_1707|M.gilvum_PYR-GCK          VAAGRRGPQALQVKLIDPPPSVS-RNRREAAAAE-HKHTPDELHGMVEDM
Mvan_5045|M.vanbaalenii_PYR-1       VAAGRRGPQALSLKLIDPPPSLT-RTRREAAAVE-HKHSPDELHGMVEDM
MSMEG_5696|M.smegmatis_MC2_155      VAAGRRGPQALSLKLIDPPPSLS-RARREAERPE-HKHTPDELHGMVEDM
MAB_0872|M.abscessus_ATCC_1997      MAAGRRGPQALSLKLIDAPPSVQ-KTRRESSGPVNHKHTTDELHGMIEDM
MLBr_02147|M.leprae_Br4923          VASGRRGPQALSLKLIDPPPSFARQVRREAL--AEHRHSPDELHGMVEDM
MAV_1000|M.avium_104                IASGRRGPQALSLKLIEPPPSLT-KARREGP--AEHKHSPDELHGMVEDM
MMAR_4661|M.marinum_M               IASGRRGPQALSLKLLDPPPSLT-RTRREA---VEHKHSPDELHGMVEDM
MUL_0279|M.ulcerans_Agy99           IASGRRGPQALSLKLLDPPPSLT-RTRHEA---VEHKHSPDELHGMVEDM
Mb0895|M.bovis_AF2122/97            IASGRRGPQALSLRLIEPPPSLS-RPRREP--AAEHKHSPDELHGMVEDM
Rv0871|M.tuberculosis_H37Rv         IASGRRGPQALSLRLIEPPPSLS-RPRREP--AAEHKHSPDELHGMVEDM
TH_1069|M.thermoresistible__bu      IATGRRGPQALSVQIIDPPPSLS-RARRQAA-AAERKHSPDELHGLIEDM
                                    :*:********.:::::.***.  : *::      ::*:.*****::***

Mflv_1707|M.gilvum_PYR-GCK          ITLLEGAVQPELRKGKYPDRKVARRVSEVVKAVARELDA
Mvan_5045|M.vanbaalenii_PYR-1       ITLLESAVQPELRKGRYPDRKVARRVSEVVKAVARELDA
MSMEG_5696|M.smegmatis_MC2_155      ITLLESAVQPELRKGRYPDRKVARRVSEVVRAVARELDA
MAB_0872|M.abscessus_ATCC_1997      ITLLEGTVQTELRKGRYPDRKIARKVSEVVRAVASELDA
MLBr_02147|M.leprae_Br4923          ITLLESTVQPELRKGRYPDRKTARRVSEVVKAVAREFDA
MAV_1000|M.avium_104                ITLLESTVQPELRKGRYPDRKTARRVSEVVRAVARELDA
MMAR_4661|M.marinum_M               ITLLESTVQPELRKGRYPDRKTARRVSEVVKAVARELDA
MUL_0279|M.ulcerans_Agy99           ITLLESTVQPELRKGRYPDRKTARRVSEVVKAVARELDA
Mb0895|M.bovis_AF2122/97            ITLLESTVQPELRKGRYPDRKTARRVAEVVRAVAREFES
Rv0871|M.tuberculosis_H37Rv         ITLLESTVQPELRKGRYPDRKTARRVAEVVRAVAREFES
TH_1069|M.thermoresistible__bu      ITLLESAVQPDLRKGRYPDRKTARRVAEVVRAVAAELEH
                                    *****.:**.:****:***** **:*:***:*** *::

species	id	gene	e-value	identity (len)	annotation
M. gilvum PYR-GCK	Mflv_1707	-	-	100% (136)	cold-shock DNA-binding domain-containing protein
M. gilvum PYR-GCK	Mflv_5230	-	5e-11	46.88% (64)	cold-shock DNA-binding domain-containing protein
M. gilvum PYR-GCK	Mflv_1392	-	2e-10	43.28% (67)	cold-shock DNA-binding domain-containing protein