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DAESREWLRLLDAGACPADRRTAIERLHERLLRVARREVHRRHTAITGSELDDIAQQAASDATLSILGKL DSFRGESRFTTWAYKFVILEVAHKIGRHHWRHPPVALDTEDWNRLPERFGIDPSEHAEAAELSAAINRAV EATLTERQRQMFVAIVIQGTPLDALVVKLGVSRNAIYKTIFDARRKIREFLVTNEYLTNHVALERP*
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. smegmatis MC2 155 | MSMEG_6682 | - | - | 100% (207) | RNA polymerase sigma-70 factor, putative |
| M. smegmatis MC2 155 | MSMEG_3275 | - | 3e-51 | 51.76% (199) | RNA polymerase sigma factor, sigma-70 family protein |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | Mb3941 | sigMa | 3e-05 | 26.82% (179) | RNA polymerase sigma factor SigM |
| M. gilvum PYR-GCK | Mflv_0841 | - | 8e-05 | 27.65% (170) | Fis family transcriptional regulator |
| M. tuberculosis H37Rv | - | - | - | - | - |
| M. leprae Br4923 | - | - | - | - | - |
| M. abscessus ATCC 19977 | MAB_4938 | - | 0.0001 | 25.73% (171) | alternative RNA polymerase sigma factor SigM |
| M. marinum M | MMAR_5475 | sigM | 6e-05 | 26.38% (163) | alternative RNA polymerase sigma factor SigM |
| M. avium 104 | MAV_2488 | - | 2e-05 | 24.73% (182) | RNA polymerase sigma factor, sigma-70 family protein |
| M. thermoresistible (build 8) | - | - | - | - | - |
| M. ulcerans Agy99 | - | - | - | - | - |
| M. vanbaalenii PYR-1 | Mvan_1605 | - | 9e-64 | 63.13% (198) | ECF subfamily RNA polymerase sigma-24 factor |
CLUSTAL 2.0.9 multiple sequence alignment
Mb3941|M.bovis_AF2122/97 MPPPIGYCPAVGFGGRHERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRL
MMAR_5475|M.marinum_M --MAFGGKRQRRDTAR-QRTDAELLAAFVAGEQLAFEELFRRHHRQLYHL
Mflv_0841|M.gilvum_PYR-GCK -MGIFGGHPQRPPGPR---TDAELLAAHVAGDRYAFEELFHRHHRQLYRL
MAB_4938|M.abscessus_ATCC_1997 ---MVQGVLTTP-----QHSDAELLAAHVAGDPSAFEQLFRRHHRRLYRL
MSMEG_6682|M.smegmatis_MC2_155 -------MDAESREWLRLLDAGACPADRRTAIERLHERLLRVARREVHRR
Mvan_1605|M.vanbaalenii_PYR-1 --MEWCAVDAESREWLAQLNG--HGNARTDAIRRLHELLVRVGRREVHRR
MAV_2488|M.avium_104 --------MVTPVAVPPEGTDAGRLVGGVP-----LARLVRDFHRPMLNF
*.: :* : .
Mb3941|M.bovis_AF2122/97 ARLTS--RTSEDADDALQDAMLSAHRGAGSFRYDAAVSSWLHRIVVNACL
MMAR_5475|M.marinum_M ARLTS--QTPEDAEDALQEAMISVHNCAGSFRQDAAVTSWLHRIVVNACL
Mflv_0841|M.gilvum_PYR-GCK AHLTS--RDPDDAADALQDAMLAAHRTARTFRQDCAVSSWLYRIVVNACL
MAB_4938|M.abscessus_ATCC_1997 ARATS--RTPEDAADALQEAMLSAHRGAANFRNDAAVTSWLYRIVVNACL
MSMEG_6682|M.smegmatis_MC2_155 HTAITGSELDDIAQQAASDATLSILGKLDSFRGESRFTTWAYKFVILEVA
Mvan_1605|M.vanbaalenii_PYR-1 GTRINGAELEDIVQQAASDATIAILRKLTAFRGDSRFTTWASRFVILEAA
MAV_2488|M.avium_104 ARTMV--DSPAVAEEAVQEAWLQVLRSSDSFQGRSSVGTWLFGIVKHTAA
. :* .:* : *: . . :* :*
Mb3941|M.bovis_AF2122/97 DRLRRAKA-HPTAPLEDVYP--------VADRTAQVETA-----------
MMAR_5475|M.marinum_M DRLRRAKS-RPTVPLEDVYP--------VPDATTRVETA-----------
Mflv_0841|M.gilvum_PYR-GCK DRLRRNKT-RAWDVLDDESAG-------AFDPTGHVDTA-----------
MAB_4938|M.abscessus_ATCC_1997 DRMRRNKA-HIPIELEEDVYT-------LEDPSTNVDTS-----------
MSMEG_6682|M.smegmatis_MC2_155 HKIGRHHWRHPPVALDTEDWNRLPERF-GIDPSEHAEAAELSA-------
Mvan_1605|M.vanbaalenii_PYR-1 SKIGRHHWRHPRPHLAHEDWEQIPERP-GGEPSGQAEAADLWE-------
MAV_2488|M.avium_104 RHRRRESRIRRHEVLADADIEAVDPLSGRMHPAGHPDAGHWRVPPSRRFL
: * : * . : . ::.
Mb3941|M.bovis_AF2122/97 -----------IAVQRALMRLPVEQRAAVVAVDMQGYSIADTSRMLGVAE
MMAR_5475|M.marinum_M -----------ILVRRALMRLPVEQRAAVVAVDMQGYSIADTALLLGVAQ
Mflv_0841|M.gilvum_PYR-GCK -----------IVVERALLCLPVEQRAAVVAVDMQGFSVAETARMLGVPE
MAB_4938|M.abscessus_ATCC_1997 -----------IVIQKALLRLPAEQRAAVIAVDMQGYSVADAAELLGVPE
MSMEG_6682|M.smegmatis_MC2_155 -----------AINRAVEATLTERQRQMFVAIVIQGTPLDALVVKLGVSR
Mvan_1605|M.vanbaalenii_PYR-1 -----------AICHAVDTKLTDRQRRVFVGIVFEQIPADTLGSRLGMSR
MAV_2488|M.avium_104 PEDQTVHRELLGYLREALDALPARQRQLVILRDLVGISAEEAAELLQLSA
. . *. .** .: : . * :.
Mb3941|M.bovis_AF2122/97 GTVKSRCARARARLARLLG---YLNTG--VNIRR---
MMAR_5475|M.marinum_M GTVKSRCARGRARLARLLG---YLDAD--INAVDMN-
Mflv_0841|M.gilvum_PYR-GCK GTVKSRCSRARTKLAAALD---CFAA---VD------
MAB_4938|M.abscessus_ATCC_1997 GTVKSRCARARARLAVALH---YLDKAGSVEPETIDY
MSMEG_6682|M.smegmatis_MC2_155 NAIYKTIFDARRKIREFLVTNEYLTNHVALERP----
Mvan_1605|M.vanbaalenii_PYR-1 NALYKTVFDARRKIRAHLVDREYLPCG----------
MAV_2488|M.avium_104 EAQRALLYRARGNLRNELEKR-YQP------------
: .* .: *