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MSAWDRSSAEWLVGLRARRGQSYRVAVEELHAMLLKIARHEINRRSAPPVGVEFDDMAHQAAADALLAIL AKLGTYRGESRFTTWVYKFVVFEVLNKLKRWRVHNRALALDVHAEQWQALSVGFATEPSHHVEARDAIAA VRRAIWVVLTERQRQLFIGAVIDGDPLDVLAARLGISRNAVYKAVFDARRKIRAFLVANGHLVAEAST
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. smegmatis MC2 155 | MSMEG_3275 | - | - | 100% (208) | RNA polymerase sigma factor, sigma-70 family protein |
| M. smegmatis MC2 155 | MSMEG_6682 | - | 3e-51 | 51.76% (199) | RNA polymerase sigma-70 factor, putative |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | - | - | - | - | - |
| M. gilvum PYR-GCK | Mflv_0841 | - | 2e-06 | 30.50% (141) | Fis family transcriptional regulator |
| M. tuberculosis H37Rv | - | - | - | - | - |
| M. leprae Br4923 | - | - | - | - | - |
| M. abscessus ATCC 19977 | - | - | - | - | - |
| M. marinum M | - | - | - | - | - |
| M. avium 104 | MAV_5299 | - | 8e-05 | 23.30% (206) | RNA polymerase sigma factor SigM |
| M. thermoresistible (build 8) | - | - | - | - | - |
| M. ulcerans Agy99 | MUL_1353 | - | 5e-05 | 27.50% (80) | alternative RNA polymerase sigma factor |
| M. vanbaalenii PYR-1 | Mvan_1605 | - | 1e-39 | 44.06% (202) | ECF subfamily RNA polymerase sigma-24 factor |
CLUSTAL 2.0.9 multiple sequence alignment
MSMEG_3275|M.smegmatis_MC2_155 --MSAWDRSSAEWLVGLRARRGQSYRVAVEELHAMLLKIARHEINRRSAP
Mvan_1605|M.vanbaalenii_PYR-1 MEWCAVDAESREWLAQLNG-HGNARTDAIRRLHELLVRVGRREVHRRGTR
Mflv_0841|M.gilvum_PYR-GCK ---MGIFGGHPQRPPGPRTDAELLAAHVAGDRYAFEELFHRHHRQLYRLA
MAV_5299|M.avium_104 ---MG-FGRNGN---GDRSDAELLAAHVAGDRYAFGELFVRHQRHLHRLA
MUL_1353|M.ulcerans_Agy99 ----------------MQAGDGQAFRALVETLHAPLVRLASIYVSR----
. : .
MSMEG_3275|M.smegmatis_MC2_155 PVGVEFDDMAHQAAADALLAILAKLGTYRGESRFTTWVYKFVVFEVLNKL
Mvan_1605|M.vanbaalenii_PYR-1 INGAELEDIVQQAASDATIAILRKLTAFRGDSRFTTWASRFVILEAASKI
Mflv_0841|M.gilvum_PYR-GCK HLTSRDPDDAADALQDAMLAAHRTARTFRQDCAVSSWLYRIVVNACLDRL
MAV_5299|M.avium_104 RLTTRSPEDAEDALQDAMLSAHRGAGAFRHDAAVGSWLHRIVVNACLDRL
MUL_1353|M.ulcerans_Agy99 -------ATAEDAVQNAWVSAVRSIGKFEGRASIRTWMFRVVLNQVHTLA
. :* :* :: :. . . :* :.*:
MSMEG_3275|M.smegmatis_MC2_155 KRWRVHNRALAL------------------DVHAEQWQALSVGFATEPSH
Mvan_1605|M.vanbaalenii_PYR-1 G--RHHWRHPRP------------------HLAHEDWEQIPERPGGEPSG
Mflv_0841|M.gilvum_PYR-GCK RRNKTRAWDVLD------------------DESAG---------AFDPTG
MAV_5299|M.avium_104 RRTKAHPTVPLE------------------DIYP----------VADRTA
MUL_1353|M.ulcerans_Agy99 RKEANTVPFANAGPEVDPRPSVDPERLIDPELGPNHWRDVPVRWDLLPEQ
.
MSMEG_3275|M.smegmatis_MC2_155 HVEARDAIAAVRRAIWVVLTERQRQLFIGAVIDGDPLDVLAARLGISRNA
Mvan_1605|M.vanbaalenii_PYR-1 QAEAADLWEAICHAVDTKLTDRQRRVFVGIVFEQIPADTLGSRLGMSRNA
Mflv_0841|M.gilvum_PYR-GCK HVDT----AIVVERALLCLPVEQRAAVVAVDMQGFSVAETARMLGVPEGT
MAV_5299|M.avium_104 QVET----TLAVQRALMRLPVEQRAAIVAVDMQGYSVADTARLLGVAEGT
MUL_1353|M.ulcerans_Agy99 RLLS-AEVRSVVVEALQKLPGAQREVVAMRDLERWSSEETCEALGISAVN
: : *. ** . :: . **:.
MSMEG_3275|M.smegmatis_MC2_155 VYKAVFDARRKIRAFLVANGHLVAEAST------
Mvan_1605|M.vanbaalenii_PYR-1 LYKTVFDARRKIRAHLVDREYLPCG---------
Mflv_0841|M.gilvum_PYR-GCK VKSRCSRARTKLAAAL-----DCFAAVD------
MAV_5299|M.avium_104 VKSRCARARVRLAELLGYLDAGAHAAAEGAAGQA
MUL_1353|M.ulcerans_Agy99 QRVLLHRGRTALRAILEEYFHDH-----------
.* : *