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MSAWDRSSAEWLVGLRARRGQSYRVAVEELHAMLLKIARHEINRRSAPPVGVEFDDMAHQAAADALLAIL AKLGTYRGESRFTTWVYKFVVFEVLNKLKRWRVHNRALALDVHAEQWQALSVGFATEPSHHVEARDAIAA VRRAIWVVLTERQRQLFIGAVIDGDPLDVLAARLGISRNAVYKAVFDARRKIRAFLVANGHLVAEAST
Operon Prediction Model: Genebank
Paralogs
species | id | gene | e-value | identity (len) | annotation |
M. smegmatis MC2 155 | MSMEG_3275 | - | - | 100% (208) | RNA polymerase sigma factor, sigma-70 family protein |
M. smegmatis MC2 155 | MSMEG_6682 | - | 3e-51 | 51.76% (199) | RNA polymerase sigma-70 factor, putative |
Closest Orthologs (e-value cutoff: 1e-4)
species | id | gene | e-value | identity (len) | annotation |
M. bovis AF2122 / 97 | - | - | - | - | - |
M. gilvum PYR-GCK | Mflv_0841 | - | 2e-06 | 30.50% (141) | Fis family transcriptional regulator |
M. tuberculosis H37Rv | - | - | - | - | - |
M. leprae Br4923 | - | - | - | - | - |
M. abscessus ATCC 19977 | - | - | - | - | - |
M. marinum M | - | - | - | - | - |
M. avium 104 | MAV_5299 | - | 8e-05 | 23.30% (206) | RNA polymerase sigma factor SigM |
M. thermoresistible (build 8) | - | - | - | - | - |
M. ulcerans Agy99 | MUL_1353 | - | 5e-05 | 27.50% (80) | alternative RNA polymerase sigma factor |
M. vanbaalenii PYR-1 | Mvan_1605 | - | 1e-39 | 44.06% (202) | ECF subfamily RNA polymerase sigma-24 factor |
CLUSTAL 2.0.9 multiple sequence alignment MSMEG_3275|M.smegmatis_MC2_155 --MSAWDRSSAEWLVGLRARRGQSYRVAVEELHAMLLKIARHEINRRSAP Mvan_1605|M.vanbaalenii_PYR-1 MEWCAVDAESREWLAQLNG-HGNARTDAIRRLHELLVRVGRREVHRRGTR Mflv_0841|M.gilvum_PYR-GCK ---MGIFGGHPQRPPGPRTDAELLAAHVAGDRYAFEELFHRHHRQLYRLA MAV_5299|M.avium_104 ---MG-FGRNGN---GDRSDAELLAAHVAGDRYAFGELFVRHQRHLHRLA MUL_1353|M.ulcerans_Agy99 ----------------MQAGDGQAFRALVETLHAPLVRLASIYVSR---- . : . MSMEG_3275|M.smegmatis_MC2_155 PVGVEFDDMAHQAAADALLAILAKLGTYRGESRFTTWVYKFVVFEVLNKL Mvan_1605|M.vanbaalenii_PYR-1 INGAELEDIVQQAASDATIAILRKLTAFRGDSRFTTWASRFVILEAASKI Mflv_0841|M.gilvum_PYR-GCK HLTSRDPDDAADALQDAMLAAHRTARTFRQDCAVSSWLYRIVVNACLDRL MAV_5299|M.avium_104 RLTTRSPEDAEDALQDAMLSAHRGAGAFRHDAAVGSWLHRIVVNACLDRL MUL_1353|M.ulcerans_Agy99 -------ATAEDAVQNAWVSAVRSIGKFEGRASIRTWMFRVVLNQVHTLA . :* :* :: :. . . :* :.*: MSMEG_3275|M.smegmatis_MC2_155 KRWRVHNRALAL------------------DVHAEQWQALSVGFATEPSH Mvan_1605|M.vanbaalenii_PYR-1 G--RHHWRHPRP------------------HLAHEDWEQIPERPGGEPSG Mflv_0841|M.gilvum_PYR-GCK RRNKTRAWDVLD------------------DESAG---------AFDPTG MAV_5299|M.avium_104 RRTKAHPTVPLE------------------DIYP----------VADRTA MUL_1353|M.ulcerans_Agy99 RKEANTVPFANAGPEVDPRPSVDPERLIDPELGPNHWRDVPVRWDLLPEQ . MSMEG_3275|M.smegmatis_MC2_155 HVEARDAIAAVRRAIWVVLTERQRQLFIGAVIDGDPLDVLAARLGISRNA Mvan_1605|M.vanbaalenii_PYR-1 QAEAADLWEAICHAVDTKLTDRQRRVFVGIVFEQIPADTLGSRLGMSRNA Mflv_0841|M.gilvum_PYR-GCK HVDT----AIVVERALLCLPVEQRAAVVAVDMQGFSVAETARMLGVPEGT MAV_5299|M.avium_104 QVET----TLAVQRALMRLPVEQRAAIVAVDMQGYSVADTARLLGVAEGT MUL_1353|M.ulcerans_Agy99 RLLS-AEVRSVVVEALQKLPGAQREVVAMRDLERWSSEETCEALGISAVN : : *. ** . :: . **:. MSMEG_3275|M.smegmatis_MC2_155 VYKAVFDARRKIRAFLVANGHLVAEAST------ Mvan_1605|M.vanbaalenii_PYR-1 LYKTVFDARRKIRAHLVDREYLPCG--------- Mflv_0841|M.gilvum_PYR-GCK VKSRCSRARTKLAAAL-----DCFAAVD------ MAV_5299|M.avium_104 VKSRCARARVRLAELLGYLDAGAHAAAEGAAGQA MUL_1353|M.ulcerans_Agy99 QRVLLHRGRTALRAILEEYFHDH----------- .* : *