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M. smegmatis MC2 155 MSMEG_3275 (-)

annotation: RNA polymerase sigma factor, sigma-70 family protein
coordinates: 3357384 - 3358010
length: 208

MSAWDRSSAEWLVGLRARRGQSYRVAVEELHAMLLKIARHEINRRSAPPVGVEFDDMAHQAAADALLAIL
AKLGTYRGESRFTTWVYKFVVFEVLNKLKRWRVHNRALALDVHAEQWQALSVGFATEPSHHVEARDAIAA
VRRAIWVVLTERQRQLFIGAVIDGDPLDVLAARLGISRNAVYKAVFDARRKIRAFLVANGHLVAEAST
Operon Prediction Model: Genebank

Paralogs
speciesidgenee-valueidentity (len)annotation
M. smegmatis MC2 155MSMEG_3275--100% (208)RNA polymerase sigma factor, sigma-70 family protein
M. smegmatis MC2 155MSMEG_6682-3e-5151.76% (199) RNA polymerase sigma-70 factor, putative

Closest Orthologs (e-value cutoff: 1e-4)
speciesidgenee-valueidentity (len)annotation
M. bovis AF2122 / 97-----
M. gilvum PYR-GCKMflv_0841-2e-0630.50% (141) Fis family transcriptional regulator
M. tuberculosis H37Rv-----
M. leprae Br4923-----
M. abscessus ATCC 19977-----
M. marinum M-----
M. avium 104MAV_5299-8e-0523.30% (206) RNA polymerase sigma factor SigM
M. thermoresistible (build 8)-----
M. ulcerans Agy99MUL_1353-5e-0527.50% (80) alternative RNA polymerase sigma factor
M. vanbaalenii PYR-1Mvan_1605-1e-3944.06% (202) ECF subfamily RNA polymerase sigma-24 factor

CLUSTAL 2.0.9 multiple sequence alignment


MSMEG_3275|M.smegmatis_MC2_155      --MSAWDRSSAEWLVGLRARRGQSYRVAVEELHAMLLKIARHEINRRSAP
Mvan_1605|M.vanbaalenii_PYR-1       MEWCAVDAESREWLAQLNG-HGNARTDAIRRLHELLVRVGRREVHRRGTR
Mflv_0841|M.gilvum_PYR-GCK          ---MGIFGGHPQRPPGPRTDAELLAAHVAGDRYAFEELFHRHHRQLYRLA
MAV_5299|M.avium_104                ---MG-FGRNGN---GDRSDAELLAAHVAGDRYAFGELFVRHQRHLHRLA
MUL_1353|M.ulcerans_Agy99           ----------------MQAGDGQAFRALVETLHAPLVRLASIYVSR----
                                                     .              :     .           

MSMEG_3275|M.smegmatis_MC2_155      PVGVEFDDMAHQAAADALLAILAKLGTYRGESRFTTWVYKFVVFEVLNKL
Mvan_1605|M.vanbaalenii_PYR-1       INGAELEDIVQQAASDATIAILRKLTAFRGDSRFTTWASRFVILEAASKI
Mflv_0841|M.gilvum_PYR-GCK          HLTSRDPDDAADALQDAMLAAHRTARTFRQDCAVSSWLYRIVVNACLDRL
MAV_5299|M.avium_104                RLTTRSPEDAEDALQDAMLSAHRGAGAFRHDAAVGSWLHRIVVNACLDRL
MUL_1353|M.ulcerans_Agy99           -------ATAEDAVQNAWVSAVRSIGKFEGRASIRTWMFRVVLNQVHTLA
                                             . :*  :* ::       :.  . . :*  :.*:       

MSMEG_3275|M.smegmatis_MC2_155      KRWRVHNRALAL------------------DVHAEQWQALSVGFATEPSH
Mvan_1605|M.vanbaalenii_PYR-1       G--RHHWRHPRP------------------HLAHEDWEQIPERPGGEPSG
Mflv_0841|M.gilvum_PYR-GCK          RRNKTRAWDVLD------------------DESAG---------AFDPTG
MAV_5299|M.avium_104                RRTKAHPTVPLE------------------DIYP----------VADRTA
MUL_1353|M.ulcerans_Agy99           RKEANTVPFANAGPEVDPRPSVDPERLIDPELGPNHWRDVPVRWDLLPEQ
                                                                  .                   

MSMEG_3275|M.smegmatis_MC2_155      HVEARDAIAAVRRAIWVVLTERQRQLFIGAVIDGDPLDVLAARLGISRNA
Mvan_1605|M.vanbaalenii_PYR-1       QAEAADLWEAICHAVDTKLTDRQRRVFVGIVFEQIPADTLGSRLGMSRNA
Mflv_0841|M.gilvum_PYR-GCK          HVDT----AIVVERALLCLPVEQRAAVVAVDMQGFSVAETARMLGVPEGT
MAV_5299|M.avium_104                QVET----TLAVQRALMRLPVEQRAAIVAVDMQGYSVADTARLLGVAEGT
MUL_1353|M.ulcerans_Agy99           RLLS-AEVRSVVVEALQKLPGAQREVVAMRDLERWSSEETCEALGISAVN
                                    :  :              *.  **  .    ::  .       **:.   

MSMEG_3275|M.smegmatis_MC2_155      VYKAVFDARRKIRAFLVANGHLVAEAST------
Mvan_1605|M.vanbaalenii_PYR-1       LYKTVFDARRKIRAHLVDREYLPCG---------
Mflv_0841|M.gilvum_PYR-GCK          VKSRCSRARTKLAAAL-----DCFAAVD------
MAV_5299|M.avium_104                VKSRCARARVRLAELLGYLDAGAHAAAEGAAGQA
MUL_1353|M.ulcerans_Agy99           QRVLLHRGRTALRAILEEYFHDH-----------
                                           .*  :   *