For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
MSTLSATPGQTVGPFYGYALPIPGGNELVPPGSPGAIRLHGLVTDGAGAPVPDALLEIWQADADGVVPTK TGSLRRDGWTFTGWGRAATDGAGRYSFTTVEPGVSQTGSAPFIAMTVFARGLLNRLFTRVYLPGEHVATD PLLSSLPSGRRDTLIAVPDEHGLTFDIRLQGDRETVFLRFPGHTP
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. smegmatis MC2 155 | MSMEG_2602 | pcaG | - | 100% (185) | protocatechuate 3,4-dioxygenase, alpha subunit |
| M. smegmatis MC2 155 | MSMEG_2601 | pcaH | 5e-12 | 33.33% (156) | protocatechuate 3,4-dioxygenase, beta subunit |
| M. smegmatis MC2 155 | MSMEG_4041 | - | 3e-06 | 33.33% (102) | hydroxyquinol 1,2-dioxygenase |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | - | - | - | - | - |
| M. gilvum PYR-GCK | Mflv_0529 | - | 2e-69 | 67.91% (187) | protocatechuate 3,4-dioxygenase, alpha subunit |
| M. tuberculosis H37Rv | - | - | - | - | - |
| M. leprae Br4923 | - | - | - | - | - |
| M. abscessus ATCC 19977 | - | - | - | - | - |
| M. marinum M | - | - | - | - | - |
| M. avium 104 | MAV_3505 | pcaG | 2e-46 | 57.67% (163) | protocatechuate 3,4-dioxygenase, alpha subunit |
| M. thermoresistible (build 8) | - | - | - | - | - |
| M. ulcerans Agy99 | - | - | - | - | - |
| M. vanbaalenii PYR-1 | Mvan_0561 | - | 2e-70 | 68.98% (187) | protocatechuate 3,4-dioxygenase, alpha subunit |
CLUSTAL 2.0.9 multiple sequence alignment
Mflv_0529|M.gilvum_PYR-GCK MSTLLPATPGQTVGPFFGYALPFDRCNELVPPGSPNAVQLHGVVADADGR
Mvan_0561|M.vanbaalenii_PYR-1 MSTLLPATPGQTVGPFFGYALPFDRCNELVPPGSPNAVQLHGVVADADGR
MSMEG_2602|M.smegmatis_MC2_155 MSTLS-ATPGQTVGPFYGYALPIPGGNELVPPGSPGAIRLHGLVTDGAGA
MAV_3505|M.avium_104 --------------------MPYPGDARLVDDGDPRAVRLHGTVYDGVGA
:* .** *.* *::*** * *. *
Mflv_0529|M.gilvum_PYR-GCK GLPDALLEIWQADADGTIPNASGSLHRDGWTFTGWGRATTDEAGRYTFTT
Mvan_0561|M.vanbaalenii_PYR-1 GLPDALLEIWQADADGSIPNASGSLHRDGWTFTGWGRATTDEAGRYTFTT
MSMEG_2602|M.smegmatis_MC2_155 PVPDALLEIWQADADGVVPTKTGSLRRDGWTFTGWGRAATDGAGRYSFTT
MAV_3505|M.avium_104 AVPDALVELWQPDGGGRIVRQAGSLRRDPAVFTGWGRCATGEDGGYGFTT
:****:*:**.*..* : :***:** .******.:*. * * ***
Mflv_0529|M.gilvum_PYR-GCK VIPGVTEPVVAPFISITVFARGLLNRLFTRAYIPGKQLENDSLLNTLTPE
Mvan_0561|M.vanbaalenii_PYR-1 VIPGVSEPVAAPFISITVFARGLLNRLFTRAYIPGKQLENDSLLNTLTPE
MSMEG_2602|M.smegmatis_MC2_155 VEPGVSQTGSAPFIAMTVFARGLLNRLFTRVYLPGEHVATDPLLSSLPSG
MAV_3505|M.avium_104 LAPGSVIDGRTPFFALTVFARGLLNRLFTRAYLPGAGPDTDPLLARVAPE
: ** :**:::**************.*:** .*.** :..
Mflv_0529|M.gilvum_PYR-GCK RRDTLIATRDQTG--LRFDIQLQDTPDKPETVFLRYPGHQR
Mvan_0561|M.vanbaalenii_PYR-1 RRDTLIATRDRTG--LRFDIQLQGTPDKPETVFLRYPGHQR
MSMEG_2602|M.smegmatis_MC2_155 RRDTLIAVPDEHG--LTFDIRLQG--DR-ETVFLRFPGHTP
MAV_3505|M.avium_104 RRTTLLCVAENGGRAYRFDIRLQG---PGETVFLAYRTDGR
** **:.. :. * ***:**. ***** : .