For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
RAWPGISAVVVTASVVLAGCGTEPQTTEPTAQPSRSSSQTTAEHPAGAAELTPVTVEVPEGLDDAPLDQP RQALVPDGWTLEVVARVPKARMAAWAPDGALLVSVPSTGEVLKVLPTQSTLLDGLDQPHGLFFAGPTLYV AESDQIDAYDYADGAAVNRRTVIDGLPDAKSPDLRGAYAHALKSVVVGDDGAVYFSIGSTGNISAEDRTA DPPRATIMRVPPGGGPAEPFATGVRNGTGLAFAPDGSLWTAVNNRDNVADPDGRVVQSYVDDHPPESVAR LTPGRELGWPYCNPDGPPPAKLIRDLQTNPDGAEMDCAALPPIEQTLGAHSAPLGMSFAELPQPFGQGAL VGVHGSWNRDAPRAPEVSFFAWRDGTLGPQQTLVGGFQDDDGQRWGRPVAAVTGPDGAVYITDDFAGAVY RLAPPP*
Operon Prediction Model: Genebank
Paralogs
species | id | gene | e-value | identity (len) | annotation |
M. smegmatis MC2 155 | MSMEG_0214 | - | - | 100% (427) | L-sorbosone dehydrogenase |
M. smegmatis MC2 155 | MSMEG_1214 | - | 3e-07 | 22.83% (381) | oxidoreductase |
M. smegmatis MC2 155 | MSMEG_5629 | - | 1e-06 | 27.00% (237) | hypothetical protein MSMEG_5629 |
Closest Orthologs (e-value cutoff: 1e-4)
species | id | gene | e-value | identity (len) | annotation |
M. bovis AF2122 / 97 | - | - | - | - | - |
M. gilvum PYR-GCK | Mflv_0697 | - | 1e-167 | 67.36% (435) | SMP-30/gluconolaconase/LRE-like region |
M. tuberculosis H37Rv | - | - | - | - | - |
M. leprae Br4923 | - | - | - | - | - |
M. abscessus ATCC 19977 | - | - | - | - | - |
M. marinum M | - | - | - | - | - |
M. avium 104 | MAV_5210 | - | 1e-05 | 28.14% (167) | hypothetical protein MAV_5210 |
M. thermoresistible (build 8) | TH_2267 | - | 6e-08 | 24.06% (374) | oxidoreductase |
M. ulcerans Agy99 | - | - | - | - | - |
M. vanbaalenii PYR-1 | Mvan_0146 | - | 1e-166 | 68.84% (430) | SMP-30/gluconolaconase/LRE-like region |
CLUSTAL 2.0.9 multiple sequence alignment Mflv_0697|M.gilvum_PYR-GCK --------MRESVRHNRIGVLVLGCALLAGCSGEQSSPSSTPTPT----- Mvan_0146|M.vanbaalenii_PYR-1 --------MRDLVRHKPIGAILLGVALLAGCTAER---QAEPSPT----- MSMEG_0214|M.smegmatis_MC2_155 --------MRAWPGIS--AVVVTASVVLAGCGTEPQTTEPTAQPS----- TH_2267|M.thermoresistible__bu -----VAVGRIRRTTVRAAVALMCLALLAAACDGEAVPAPPAPPE----- MAV_5210|M.avium_104 MPAIDVAPGWRLDRVTAPSRLFGANGLRTGPDGRIYIAQVTGSQISALDH . . : :. Mflv_0697|M.gilvum_PYR-GCK -AAPSSSSTSTTQPVAGTQTVTVEVAPDLGDSPFDEPRQ-AVVPKGWTLS Mvan_0146|M.vanbaalenii_PYR-1 -APPP-ASTTPAAPAAGTARVTVEVDADLAGAPFDAPRE-AMVPQGWTLS MSMEG_0214|M.smegmatis_MC2_155 -RSSSQTTAEHPAGAAELTPVTVEVPEGLDDAPLDQPRQ-ALVPDGWTLE TH_2267|M.thermoresistible__bu -QPPAQTGESGARDVVTDLGVPWGIAFLPDGSALIAERDSGMIKQLSEPG MAV_5210|M.avium_104 HTGELETASPKGGDIVAPDDVAFDAAGNLYATEVMDGRVSVRDTGGRTRV : . *. : . * Mflv_0697|M.gilvum_PYR-GCK VWARTSRPRLMAWAPDGALLVSVPSTGQVLSFRPRGDGPPEESVLLDDLD Mvan_0146|M.vanbaalenii_PYR-1 VWARTPRPRLAAWTPDGDLLVSVPSAGRVLRFEPRGDGPPDESVLLDGLD MSMEG_0214|M.smegmatis_MC2_155 VVARVPKARMAAWAPDGALLVSVPSTGEVLKVLP------TQSTLLDGLD TH_2267|M.thermoresistible__bu VVRDVGAVEGVAARGEGGLLGLATAGDTVFAYHT---------------- MAV_5210|M.avium_104 LRDDVPSANGITFHRGRLFIGECRERGRLLEFDLAGG---PPRVLLDNVP : . . : :: . :: Mflv_0697|M.gilvum_PYR-GCK EPHGLAFDGPTLYVAQSDQVDGYDYAGGAATNPRVVAGGLPDDRSPDLRG Mvan_0146|M.vanbaalenii_PYR-1 EPHGLAFDGSTLYVAESDQVDAYRYAAGAATEPRTVAGGLPDDRSPDLRG MSMEG_0214|M.smegmatis_MC2_155 QPHGLFFAGPTLYVAESDQIDAYDYADGAAVNRRTVIDGLPDAKSPDLRG TH_2267|M.thermoresistible__bu -------------TATDNRVVRMDFDGQALGPPAPILTGIP-------TG MAV_5210|M.avium_104 SPNAMEVGPDGLLYFPVMGANEIWRVDPDGGEPQCVATGLGVPDSVKFDA : *: . Mflv_0697|M.gilvum_PYR-GCK AYSHVLKSVAVGPDGAVYFSIG-----STGNISADDRDATPPRATIMRVP Mvan_0146|M.vanbaalenii_PYR-1 AYAHALKSVAVGPDGAVYFSIG-----STGNISAQDRSADPPRATVMRVP MSMEG_0214|M.smegmatis_MC2_155 AYAHALKSVVVGDDGAVYFSIG-----STGNISAEDRTADPPRATIMRVP TH_2267|M.thermoresistible__bu GSRHDGGRIAFGPDGRLYVATG-----EIGDPPLAQDRSSLAGKILRINP MAV_5210|M.avium_104 RGHIVSTQVASGQVLRIDPRSGEQQVLAQLNPGLDNCTFVGDRLFVSNFT :. * : * : : : . Mflv_0697|M.gilvum_PYR-GCK PGGGPAEP-------FATGVRNGTGLAVAPDGAVWIANNGRDNIAFPDPE Mvan_0146|M.vanbaalenii_PYR-1 PGGGRAEP-------FATGVRNGTGLAVAPDGAVWTANNGRDNVAYPEPG MSMEG_0214|M.smegmatis_MC2_155 PGGGPAEP-------FATGVRNGTGLAFAPDGSLWTAVNNRDNVADPD-- TH_2267|M.thermoresistible__bu DGSIPADNPDPQSPVWSFGHRNVQGLAWDPGGRLWATEYG---------- MAV_5210|M.avium_104 GEITEISPDGTTRSVLPGGLNWPLDLAVGHDGRLYVADGTYFYAALPDGA . . * . .** .* :: : Mflv_0697|M.gilvum_PYR-GCK PSYGEVLPDY--------VDDNPPEQIARLTPGRELG--WPYCNN----- Mvan_0146|M.vanbaalenii_PYR-1 PSYGQVIPEY--------VNDNPPEQIARLTPGRELG--WPYCNN----- MSMEG_0214|M.smegmatis_MC2_155 ---GRVVQSY--------VDDHPPESVARLTPGRELG--WPYCN------ TH_2267|M.thermoresistible__bu --------------------ADTWDELNLIEPGGNYG--WPVAE------ MAV_5210|M.avium_104 LHTVGMLFSPGYPGFLRGVAASGPGEFVVTTSGGQISRYRPQASESEVLA .. .* : . * .. Mflv_0697|M.gilvum_PYR-GCK -----VGAPADLPFVRDVQTNPDGELLDCAALPPVEQSMGAHSAPLGLSF Mvan_0146|M.vanbaalenii_PYR-1 -----VDGPADLPFVRDVQTNPDGALLDCAALPPVEQSMGAHSAPLGLSF MSMEG_0214|M.smegmatis_MC2_155 -----PDGPPPAKLIRDLQTNPDGAEMDCAALPPIEQTLGAHSAPLGMSF TH_2267|M.thermoresistible__bu -----------------------GRQEMPGMIDPVLQWRPAEASPSGLAF MAV_5210|M.avium_104 DGFDQLYGIAPGPAGVVVAELGTGRVLSLQRSGAVEVLAAGLREPVGVAI * .: . * *::: Mflv_0697|M.gilvum_PYR-GCK TDG--VLPEPYASGALVGVHGS----WNRQPPRAPEVSFYPWRDGGLGDQ Mvan_0146|M.vanbaalenii_PYR-1 VDG--ELPAPFQRGALVGVHGS----WNRQPPRAPEVSFYPWQDGTLGGQ MSMEG_0214|M.smegmatis_MC2_155 AE----LPQPFGQGALVGVHGS----WNRDAPRAPEVSFFAWRDGTLGPQ TH_2267|M.thermoresistible__bu WDG---------ALWIANLRGQ----RLLEVPVRADGELGEPVSRFVGEY MAV_5210|M.avium_104 GSDGAALVAEAGAGRVVRVDGSKVDTVMADLQRPQGILLHGGVLYVVDAG . :. : *. : : :. Mflv_0697|M.gilvum_PYR-GCK QTLVGGFQADDGSRWGRPVAATTGP------------------------- Mvan_0146|M.vanbaalenii_PYR-1 QTLVGGFQTDDGTRWGRPVAAVVGP------------------------- MSMEG_0214|M.smegmatis_MC2_155 QTLVGGFQDDDGQRWGRPVAAVTGP------------------------- TH_2267|M.thermoresistible__bu GRLRTVVAAPDGSLW-----FTTSN------------------------- MAV_5210|M.avium_104 AKELIAFDPADKTRRTIASGLPVGPPPGVNPKPLKGMPPFSGPQGPFAGI . * .. Mflv_0697|M.gilvum_PYR-GCK ----DGSVYITDDAADAIYRLTPPA--- Mvan_0146|M.vanbaalenii_PYR-1 ----DGAVYITDDAADAIYRLAPG---- MSMEG_0214|M.smegmatis_MC2_155 ----DGAVYITDDFAGAVYRLAPPP--- TH_2267|M.thermoresistible__bu ----RDGRGVPRSGDDRILRYRR----- MAV_5210|M.avium_104 TAAADGTLYVSADGEGSVLALRPTRDGH . :. . . :