For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
AQGTVKWFNGEKGFGFITPDDGTKDLFVHYSEIQGSGYRSLEENQRVQFEVEQGTKGPQAVGVSAV*
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. marinum M | MMAR_4823 | cspA | - | 100% (67) | cold shock protein a, CspA |
| M. marinum M | MMAR_5140 | cspA_1 | 2e-25 | 70.15% (67) | cold shock protein A CspA_1 |
| M. marinum M | MMAR_4661 | cspB | 3e-09 | 39.34% (61) | cold shock-like protein B CspB |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | Mb3672c | cspA | 6e-25 | 67.16% (67) | cold shock protein A |
| M. gilvum PYR-GCK | Mflv_5230 | - | 3e-31 | 86.57% (67) | cold-shock DNA-binding domain-containing protein |
| M. tuberculosis H37Rv | Rv3648c | cspA | 6e-25 | 67.16% (67) | cold shock protein A |
| M. leprae Br4923 | MLBr_00198 | cspA | 5e-26 | 70.15% (67) | putative cold shock protein |
| M. abscessus ATCC 19977 | MAB_0487 | - | 3e-26 | 73.13% (67) | cold shock protein A (CspA) |
| M. avium 104 | MAV_0852 | - | 8e-34 | 94.03% (67) | hypothetical protein MAV_0852 |
| M. smegmatis MC2 155 | MSMEG_0559 | - | 3e-29 | 82.09% (67) | hypothetical protein MSMEG_0559 |
| M. thermoresistible (build 8) | TH_0855 | - | 3e-24 | 72.58% (62) | PROBABLE COLD SHOCK PROTEIN A CSPA |
| M. ulcerans Agy99 | MUL_0392 | cspA | 1e-34 | 98.51% (67) | cold shock protein a, CspA |
| M. vanbaalenii PYR-1 | Mvan_1040 | - | 6e-29 | 82.09% (67) | cold-shock DNA-binding domain-containing protein |
CLUSTAL 2.0.9 multiple sequence alignment
MMAR_4823|M.marinum_M MAQGTVKWFNGEKGFGFITPDDGTKDLFVHYSEIQGSGYRSLEENQRVQF
MUL_0392|M.ulcerans_Agy99 MAQGTVKWFNGEKGFGFITPDDGTKDLFVHYSEIQCSGYRSLEENQRVQF
MAV_0852|M.avium_104 MAQGTVKWFNGEKGFGFITPDDGTKDLFVHYSEIQGSGYRSLDENQRVQF
MSMEG_0559|M.smegmatis_MC2_155 MAQGTVKWFNGEKGFGFIAPDGGAPDVFVHYSEISGSGFRSLEENQRVEF
Mvan_1040|M.vanbaalenii_PYR-1 MAQGTVKWFNGDKGFGFIAPDGGAPDVFVHYSEISGNGYRSLEENQRVEF
Mflv_5230|M.gilvum_PYR-GCK MAQGTVKWFNGEKGFGFIAPDDGSKDVFVHYSEISGSGYRSLEENQRVEF
Mb3672c|M.bovis_AF2122/97 MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEF
Rv3648c|M.tuberculosis_H37Rv MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGTGFRTLEENQKVEF
MLBr_00198|M.leprae_Br4923 MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGSGFRTLEENQKVEF
MAB_0487|M.abscessus_ATCC_1997 MPQGTVKWFNAEKGFGFIAPEDGSADVFVHYTEIQGNGFRTLEENQKVEF
TH_0855|M.thermoresistible__bu -----VKWFNAEKGFGFIAPEDGSADVFVHYTEIQGSGFRTLEENQRVEF
*****.:******:*:.*: *:****:**. .*:*:*:***:*:*
MMAR_4823|M.marinum_M EVEQGTKGPQAVGVSAV
MUL_0392|M.ulcerans_Agy99 EVEQGTKGPQAVGVSAV
MAV_0852|M.avium_104 DVEQGAKGPQAVGVSTV
MSMEG_0559|M.smegmatis_MC2_155 EITQGAKGPQAVGVTAV
Mvan_1040|M.vanbaalenii_PYR-1 EVEQGNKGPQAVRVTAV
Mflv_5230|M.gilvum_PYR-GCK EVEQGNKGPQAVRVNAI
Mb3672c|M.bovis_AF2122/97 EIGHSPKGPQATGVRSL
Rv3648c|M.tuberculosis_H37Rv EIGHSPKGPQATGVRSL
MLBr_00198|M.leprae_Br4923 EIGHSPKGPQATGVRSV
MAB_0487|M.abscessus_ATCC_1997 EVGQSPKGPQATGVRAV
TH_0855|M.thermoresistible__bu EVGQSPKGPQATGVRSI
:: :. *****. * ::