For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
VNATAIAKPMTALGQFFLLSAEALAAAVRGPWAWREILEQIWFVARVSIFPTIMLSIPYTVLIVFVLNIL LVEIGAGDLSGAGAGLASVTQVGPVVTAMVVSGAGSTAMCADLGARTIREEIDAMKVIGVNPVQALVVPR IIAATFVAVMLYAVVAVTGLTGSYIFVVFVQHVTPGAFVAGMTLVTGLPQVVISLIKATLFGLSAGLIAC YKGLSVGGGPTGVGNAVNETVVFSFMALFFINILTTALGVKVTAK
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. avium 104 | MAV_2059 | - | - | 100% (255) | TrnB1 protein |
| M. avium 104 | MAV_0946 | - | 9e-89 | 60.96% (251) | TrnB1 protein |
| M. avium 104 | MAV_2530 | - | 7e-84 | 58.54% (246) | TrnB1 protein |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | Mb3531c | yrbE4A | 1e-85 | 58.40% (250) | integral membrane protein YrbE4a |
| M. gilvum PYR-GCK | Mflv_2099 | - | 4e-95 | 64.82% (253) | hypothetical protein Mflv_2099 |
| M. tuberculosis H37Rv | Rv3501c | yrbE4A | 1e-85 | 58.40% (250) | integral membrane protein YrbE4a |
| M. leprae Br4923 | MLBr_02587 | yrbE1A | 6e-77 | 52.82% (248) | hypothetical protein MLBr_02587 |
| M. abscessus ATCC 19977 | MAB_4155c | - | 1e-82 | 56.80% (250) | hypothetical protein MAB_4155c |
| M. marinum M | MMAR_4049 | yrbE3A_1 | 2e-95 | 65.22% (253) | integral membrane protein YrbE3A_1 |
| M. smegmatis MC2 155 | MSMEG_0344 | - | 7e-94 | 64.37% (247) | hypothetical protein MSMEG_0344 |
| M. thermoresistible (build 8) | TH_0260 | - | 2e-95 | 67.34% (248) | CONSERVED HYPOTHETICAL INTEGRAL MEMBRANE PROTEIN YRBE4A |
| M. ulcerans Agy99 | MUL_3916 | yrbE3A_1 | 7e-96 | 65.22% (253) | integral membrane protein YrbE3A_1 |
| M. vanbaalenii PYR-1 | Mvan_0920 | - | 1e-96 | 67.07% (249) | hypothetical protein Mvan_0920 |
CLUSTAL 2.0.9 multiple sequence alignment
MMAR_4049|M.marinum_M ----------MVAPVAVAKPLRAFGGFYSMALDTFVAMVHPPFAWREYIA
MUL_3916|M.ulcerans_Agy99 ----------MVTPVAVAKPLRAFGGFYSMALDTFVAMVHPPFAWREYIA
Mflv_2099|M.gilvum_PYR-GCK ----------MVASGVIAKPMRAFGGFFSMALDTFVAMVKPPFAWREFIS
MSMEG_0344|M.smegmatis_MC2_155 ----------MIALGPAAKPVGALGGFFAMTLDVFITIARPPFAWREYLN
TH_0260|M.thermoresistible__bu ----------------VTKPVDTAGEFFAMVLDTLVAMGRRPFAWREFLL
MAV_2059|M.avium_104 -----------MNATAIAKPMTALGQFFLLSAEALAAAVRGPWAWREILE
Mvan_0920|M.vanbaalenii_PYR-1 ----------MPATESFARPMRAVGGFFATAVDTAVLAPQPPFAWREFIF
Mb3531c|M.bovis_AF2122/97 ------------MIQQLAVPARAVGGFFEMSMDTARAAFRRPFQFREFLD
Rv3501c|M.tuberculosis_H37Rv ------------MIQQLAVPARAVGGFFEMSMDTARAAFRRPFQFREFLD
MAB_4155c|M.abscessus_ATCC_199 ------------MKQQLAAPARAVGGFVSMSLATFRNIFRRPFQGQEFLD
MLBr_02587|M.leprae_Br4923 MTTETRSSLVEYAHTKLQTPLVLVGGFFRMLVLTGKALFRRPFQWREFIL
* * * . : *: :* :
MMAR_4049|M.marinum_M QAWFVARVSLLPTLMLTIPYTVLLTFIENILLTEIGAADFSGTGAALGSV
MUL_3916|M.ulcerans_Agy99 QAWFVARVSLLPTLMLTIPYTVLLTFIENILLTEIGAADFSGTGAALGSV
Mflv_2099|M.gilvum_PYR-GCK QSWFVARVSIVPTLMLTIPYTVLLTFTFNILLTEFGAADFSGTGAALGTV
MSMEG_0344|M.smegmatis_MC2_155 QTWFVARVSLVPALMLTVPYTVLLVFTFNILLIEFGAADFSGTGAAIGTV
TH_0260|M.thermoresistible__bu QSWFVARVSILPTLMLSIPYTVLFVFTINVLLVEFGAADFSGTGAAFGTV
MAV_2059|M.avium_104 QIWFVARVSIFPTIMLSIPYTVLIVFVLNILLVEIGAGDLSGAGAGLASV
Mvan_0920|M.vanbaalenii_PYR-1 QMWFVARVSIFPTVMLSIPFTVLSVFIFNILLVEFGAADFSGAGAAFGAV
Mb3531c|M.bovis_AF2122/97 QTWMVARVSLVPTLLVSIPFTVLVAFTLNILLREIGAADLSGAGTAFGTI
Rv3501c|M.tuberculosis_H37Rv QTWMVARVSLVPTLLVSIPFTVLVAFTLNILLREIGAADLSGAGTAFGTI
MAB_4155c|M.abscessus_ATCC_199 QTWFIARVSLLPTLLVAIPFTVLVAFTLNILLREIGAADLSGAATAFGTV
MLBr_02587|M.leprae_Br4923 QCWFIMRVAFLPTVMVSIPLTVLLIFTLNVLLAQFSAADLSGAGAAIGAV
* *:: **::.*::::::* *** * *:** ::.*.*:**:.:.:.::
MMAR_4049|M.marinum_M RQIGPIVTVLVVAGAGATAMCADLGARTIREELDALRVMGVDPIQALVVP
MUL_3916|M.ulcerans_Agy99 RQIGPIVTVLVVAGAGATAMCADLGARTIREELDALRVMGVDPIQALVVP
Mflv_2099|M.gilvum_PYR-GCK RQIGPIVTVLVVAGAGATAMCADLGARTIREELDALRVMGVNPIQALVVP
MSMEG_0344|M.smegmatis_MC2_155 SQIGPIVTVLVVAGAGSTAMCADLGARTIREELDAMRVMGIDPIQALVVP
TH_0260|M.thermoresistible__bu TQLGPVVTALVVAGAGATAMCADLGARTIREELDALRVLGIDPIQALVVP
MAV_2059|M.avium_104 TQVGPVVTAMVVSGAGSTAMCADLGARTIREEIDAMKVIGVNPVQALVVP
Mvan_0920|M.vanbaalenii_PYR-1 TQIGPLVTVLVVAGAAATAMCADLGARTIREELDAMRVMGINPLQALVVP
Mb3531c|M.bovis_AF2122/97 TQLGPVVTVLVVAGAGATAICADLGARTIREEIDAMRVLGIDPIQRLVVP
Rv3501c|M.tuberculosis_H37Rv TQLGPVVTVLVVAGAGATAICADLGARTIREEIDAMRVLGIDPIQRLVVP
MAB_4155c|M.abscessus_ATCC_199 TQLGPVVTVLVVAGAGATAICADLGARTIREEIDAMQVLGIDPIQRLVVP
MLBr_02587|M.leprae_Br4923 TQLGPLTTVLVVAGAGSTSICADLGARTIREEIDAMEVLGIDPIHRLVVP
*:**:.*.:**:**.:*::************:**:.*:*::*:: ****
MMAR_4049|M.marinum_M RVLAATTVSLALSASVILVGLSGAYFFCVFIQHVSPGAFAAGLTLIIGTT
MUL_3916|M.ulcerans_Agy99 RVLAATTVSLALSASVILVGLSGAYFFCVFIQHVSPGAFAAGLTLIIGTT
Mflv_2099|M.gilvum_PYR-GCK RVLAATLVSLALSATVILVGLAGAYFFCVYIQNVSPGAFAAGLTLIIGAT
MSMEG_0344|M.smegmatis_MC2_155 RVLAATTVALALSATVIIVGLAGGFVFAVFIQHVPPGSFVAGLTVLTHGA
TH_0260|M.thermoresistible__bu RVLAAMMVALMLSSLVVLVGLSGAFGFSVFVQDVTPGAFVAGLTLVTGAA
MAV_2059|M.avium_104 RIIAATFVAVMLYAVVAVTGLTGSYIFVVFVQHVTPGAFVAGMTLVTGLP
Mvan_0920|M.vanbaalenii_PYR-1 RVLATVVVALLLNSVVSVVGVVGGFFFSVFVQHVTPGAFVAGMTLFTGLP
Mb3531c|M.bovis_AF2122/97 RVLASTLVALLLNGLVCAIGLSGGYAFSVFLQGVNPGAFINGLTVLTGLR
Rv3501c|M.tuberculosis_H37Rv RVLASTLVALLLNGLVCAIGLSGGYAFSVFLQGVNPGAFINGLTVLTGLR
MAB_4155c|M.abscessus_ATCC_199 RVLASTFVALLLNGLVCAIGMVGGYVFSVFLQGVNPGAFINGLTVLTGLG
MLBr_02587|M.leprae_Br4923 RVLAATLVATLLNGLVITVGLVGGYLFGVYLQNVSGGAYLATLTTITGLP
*::*: *: * . * *: *.: * *::* * *:: :* .
MMAR_4049|M.marinum_M DVVIALVKAALFGLSAGLIACYKGISVGGGPAGVGNAVNETVVFTFMALF
MUL_3916|M.ulcerans_Agy99 DVVIALVKAALFGLSAGLIACYKGISVGGGPAGVGNAVNETVVFTFMALF
Mflv_2099|M.gilvum_PYR-GCK DVIIALVKAALFGLSAGMIACYKGISVGGGPAGVGNAVNETVVFTFMALF
MSMEG_0344|M.smegmatis_MC2_155 DVAVALAKAALFGLSAGLIACYKGISVGGGPAGVGNAVNETVVFTFMALF
TH_0260|M.thermoresistible__bu DVFIGLAKAMLFGLAAGLIACYKGIFVGGGPAGVGNAVNETVVYSFMALF
MAV_2059|M.avium_104 QVVISLIKATLFGLSAGLIACYKGLSVGGGPTGVGNAVNETVVFSFMALF
Mvan_0920|M.vanbaalenii_PYR-1 EIIISLTKASLFGLVAALIGCYKGISVGGGPVGVGTAVNETVVFSFMALF
Mb3531c|M.bovis_AF2122/97 ELILAEIKALLFGVMAGLVGCYRGLTVKGGPKGVGNAVNETVVYAFICLF
Rv3501c|M.tuberculosis_H37Rv ELILAEIKALLFGVMAGLVGCYRGLTVKGGPKGVGNAVNETVVYAFICLF
MAB_4155c|M.abscessus_ATCC_199 ELMISEVKAFLFGIFAGLVGCYRGLTVKGGPKGVGDAVNETVVYAFICLF
MLBr_02587|M.leprae_Br4923 EVVIATVKAATFGLIAGLVGCYRGLIVRGGSNGLGAAVNETVVLCVVALY
:: :. ** **: *.::.**:*: * **. *:* ******* .:.*:
MMAR_4049|M.marinum_M AINIVATAVAIKVTL--
MUL_3916|M.ulcerans_Agy99 AINIVATAVAIKVTL--
Mflv_2099|M.gilvum_PYR-GCK AINIVATAVAVKVTM--
MSMEG_0344|M.smegmatis_MC2_155 AINVIATAVGVKITVV-
TH_0260|M.thermoresistible__bu FINIIATAVGVRITL--
MAV_2059|M.avium_104 FINILTTALGVKVTAK-
Mvan_0920|M.vanbaalenii_PYR-1 VINVVVTAVGVKATM--
Mb3531c|M.bovis_AF2122/97 VINVVMTAIGVRISAQ-
Rv3501c|M.tuberculosis_H37Rv VINVVMTAIGVRISAQ-
MAB_4155c|M.abscessus_ATCC_199 VINVVMTAIGVRVLVKH
MLBr_02587|M.leprae_Br4923 AVNVVLTTIGVRFGTGH
:*:: *::.::