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MECPVDVPETGHSQVKPRVGRPTDDYADVPDMFRSLAGLAEHSDAYQRKHEEIVTRCLPLADNVARHFDR RGEDLEDLIQVARVGLLNAVNRFDPEKGASFLGFAVPTMMGEVRRHFRDHGWSLHVPRAIRDRHAQISRA TAELTQELQRAPTAGELAAELGIDREEVVESLIAADAYQPQSIEAPLSHGDQESKHLSDLLGNEDPALEH VTNREAVRPLLANLPLRERTVLELRFFKGMTQSQIAAQIGVSQMHVSRILSDTLRYLREQMA
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. abscessus ATCC 19977 | MAB_2511 | - | - | 100% (272) | RNA polymerase sigma factor SigF |
| M. abscessus ATCC 19977 | MAB_3009 | - | 8e-17 | 28.88% (232) | RNA polymerase sigma factor |
| M. abscessus ATCC 19977 | MAB_3028 | - | 5e-15 | 29.55% (220) | RNA polymerase sigma factor SigB |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | Mb3314c | sigF | 2e-76 | 55.65% (248) | RNA polymerase sigma factor SigF |
| M. gilvum PYR-GCK | Mflv_4789 | - | 3e-79 | 57.37% (251) | RNA polymerase sigma factor SigF |
| M. tuberculosis H37Rv | Rv3286c | sigF | 2e-76 | 55.65% (248) | RNA polymerase sigma factor SigF |
| M. leprae Br4923 | MLBr_01014 | - | 1e-17 | 29.92% (244) | RNA polymerase sigma factor SigB |
| M. marinum M | MMAR_1248 | sigF | 3e-76 | 56.05% (248) | alternate RNA polymerase sigma factor SigF |
| M. avium 104 | MAV_2963 | - | 6e-83 | 58.85% (260) | RNA polymerase sigma factor SigF |
| M. smegmatis MC2 155 | MSMEG_1804 | - | 9e-82 | 60.64% (249) | RNA polymerase sigma factor SigF |
| M. thermoresistible (build 8) | TH_0241 | sigF | 1e-73 | 56.43% (241) | ALTERNATE RNA POLYMERASE SIGMA FACTOR SIGF |
| M. ulcerans Agy99 | MUL_2640 | sigF | 2e-76 | 56.05% (248) | RNA polymerase sigma factor SigF |
| M. vanbaalenii PYR-1 | Mvan_1660 | - | 6e-78 | 57.77% (251) | RNA polymerase sigma factor SigF |
CLUSTAL 2.0.9 multiple sequence alignment
MAB_2511|M.abscessus_ATCC_1997 ------------MECPVDVPETGHSQVKPRVGRPTDDYADVPDMFRSLAG
MAV_2963|M.avium_104 ------------MTNAIAPTPT---AARPTT-QSDDSYEDVVEMFLELRR
Mb3314c|M.bovis_AF2122/97 ------------MTARAAGGSAS---------RANE-YADVPEMFRELVG
Rv3286c|M.tuberculosis_H37Rv ------------MTARAAGGSAS---------RANE-YADVPEMFRELVG
MMAR_1248|M.marinum_M ------------MTSRTAGGSSS---------RPNE-YADVPEMFRELAT
MUL_2640|M.ulcerans_Agy99 ------------MTSRTAGGSSS---------RPNE-YADVPEMFRELAT
Mflv_4789|M.gilvum_PYR-GCK ------------MTRSSSQGSS----------RSNSEYSDVADMFRELAE
Mvan_1660|M.vanbaalenii_PYR-1 ------------MTRSSSQGSSS---------RSGSEYADVAPMFRELAE
TH_0241|M.thermoresistible__bu -------------------------------------------MFRELRK
MSMEG_1804|M.smegmatis_MC2_155 ------------MTS---------------------EYADVLDMFRELAG
MLBr_01014|M.leprae_Br4923 MAEATTNRVDSDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEA
: :
MAB_2511|M.abscessus_ATCC_1997 ---------------------LAEHSDAYQRKHEEIVTRCLPLADNVARH
MAV_2963|M.avium_104 ---------------------MPAESHEYRRQRERIVARCLPLADHVASH
Mb3314c|M.bovis_AF2122/97 ---------------------LPAGSPEFQRHRDKIVQRCLPLADHIARR
Rv3286c|M.tuberculosis_H37Rv ---------------------LPAGSPEFQRHRDKIVQRCLPLADHIARR
MMAR_1248|M.marinum_M ---------------------FDADSPNFQRHRDTIVERCLPLADHIARR
MUL_2640|M.ulcerans_Agy99 ---------------------FDADSPNFQRHRDTIVERCLPLADHIARR
Mflv_4789|M.gilvum_PYR-GCK ---------------------LEEGSAAFQRQRDRIVERCLPLADHIARR
Mvan_1660|M.vanbaalenii_PYR-1 ---------------------LEEGTAAFQRQRDRIVERCLPLADHIARR
TH_0241|M.thermoresistible__bu ---------------------LPAESKEFQRQRDRIVERCLPLADHIARR
MSMEG_1804|M.smegmatis_MC2_155 ---------------------TTEGSPSYVRQREKIVERCLPLADHIARR
MLBr_01014|M.leprae_Br4923 GLYAEHLLQTRKRFGEGRKRALAAVARDGAAARRHLLEANLRLVVSLAKR
: : :: * *. :* :
MAB_2511|M.abscessus_ATCC_1997 FDRRGEDLEDLIQVARVGLLNAVNRFDPEKGASFLGFAVPTMMGEVRRHF
MAV_2963|M.avium_104 FARRGEGLDDLVQVARLGLMNAVNRFDPAKGPSFIGFAVPTMMGEVRRYF
Mb3314c|M.bovis_AF2122/97 FEGRGEPRDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHF
Rv3286c|M.tuberculosis_H37Rv FEGRGEPRDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHF
MMAR_1248|M.marinum_M FEGRGEPRDDLVQVARVGLVNAVVRFDVETGSDFVSFAVPTIMGEVRRHF
MUL_2640|M.ulcerans_Agy99 FEGRGEPRDDLVQVARVGLVNAVVRFDVETGSDFVSFAVPTIMGEVRRHF
Mflv_4789|M.gilvum_PYR-GCK FDGRGEPRDDLVQVARVGLVNAVIRFDVTAGSDFVSFAVPTIMGEVRRHF
Mvan_1660|M.vanbaalenii_PYR-1 FDGRGEPRDDLVQVARVGLVNAVIRFDVNAGSDFVSFAVPTIMGEVRRHF
TH_0241|M.thermoresistible__bu FDGRGEARDDLVQVARVGLVNAVIRFDVETGSDFVSFAVPTIMGEVRRHF
MSMEG_1804|M.smegmatis_MC2_155 FDGRGEPREDLVQVARVGLVNAVNRFDVEAGSDFVSFAVPTIMGEVRRHF
MLBr_01014|M.leprae_Br4923 YTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGM
: ** **:* ..:**:.* :** * .* :*. : : * :
MAB_2511|M.abscessus_ATCC_1997 RDHGWSLHVPRAIRDRHAQISRATAELTQELQRAPTAGELAAELGIDREE
MAV_2963|M.avium_104 RDYSWGMRVPRRLRELHVQISRTTADLAQQLGRAPNAGELSQVLEVPREE
Mb3314c|M.bovis_AF2122/97 RDNSWSVKVPRRLKELHLRLGTATADLSQRLGRAPSASELAAELGMDRAE
Rv3286c|M.tuberculosis_H37Rv RDNSWSVKVPRRLKELHLRLGTATADLSQRLGRAPSASELAAELGMDRAE
MMAR_1248|M.marinum_M RDNSWSVKVPRRLKELHLRLGAATAELSQRLGRAPTATELAAELEMDRAE
MUL_2640|M.ulcerans_Agy99 RDNSWSVKVPRRLKELHLRLGAATAELSQRLGRAPTATELAAELEMDRAE
Mflv_4789|M.gilvum_PYR-GCK RDNSWSVKVPRRLKELHLRLGAATAELSQRLGRAPTPSELAAELEMDRDE
Mvan_1660|M.vanbaalenii_PYR-1 RDNSWSVKVPRRLKELHLRLGAATAELSQRLGRAPTATELAAELEMDRDE
TH_0241|M.thermoresistible__bu RDNSWSVKVPRRLKELHLRLGAATAELSQRLGRAPTASELAEELEMDRDE
MSMEG_1804|M.smegmatis_MC2_155 RDNSWSVKVPRRLKELHLRLGAATAELSQRLGRAPTASELAHELDMDREE
MLBr_01014|M.leprae_Br4923 ADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAAESGIPIEK
* . :::* : : ::. . :: *.* * .. **: : :
MAB_2511|M.abscessus_ATCC_1997 VVESLIAADAYQPQSIEAPLSH-GDQES-KHLSDLLGNEDPALEHVTNRE
MAV_2963|M.avium_104 IVECLVAGDAYRLDSLDAPQGA-DSSGTPRSVADSVGDIDPQIEHITNRE
Mb3314c|M.bovis_AF2122/97 VIEGLLAGSSYHTLSIDSGGG--S-DDDARAITDTLGDVDAGLDQIENRE
Rv3286c|M.tuberculosis_H37Rv VIEGLLAGSSYHTLSIDSGGG--S-DDDARAITDTLGDVDAGLDQIENRE
MMAR_1248|M.marinum_M VVEGLVAGSSYNTLSIDSGSG--SEDDDARAIADTLGDMDAGLDRIEDRE
MUL_2640|M.ulcerans_Agy99 VVEGLVAGSSYNTLSIDSGSG--SEDDDARAIADTLGDMDAGLDRIEDRE
Mflv_4789|M.gilvum_PYR-GCK VVEGLVAGSSYNTLSIDSGGG--SGNEDAPAIADTLGDVDLTLDQIENRE
Mvan_1660|M.vanbaalenii_PYR-1 VVEGLVAGSSYNTLSIDSGG---SGNEDAPAIADTLGDVDLSLDQIENRE
TH_0241|M.thermoresistible__bu VIEGLVAGSSYNTLSIDSGGSG-SGTEDAPAIADTLGDVDTGLDQIENRE
MSMEG_1804|M.smegmatis_MC2_155 VVEGLIAGSSYNTLSIDSGGG---GDEEAPAIVDTLGDLDMGLDQIDNRE
MLBr_01014|M.leprae_Br4923 INDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHTD
: : * . .: : :. : : .: . :
MAB_2511|M.abscessus_ATCC_1997 AVRPLLANLPLRERTVLELRF----FKGMTQSQIAAQIGVSQMHVSRILS
MAV_2963|M.avium_104 ALRVLVATLPHREREVLRMRF----FESMTQSQIAERIGVSQMQVSRILA
Mb3314c|M.bovis_AF2122/97 VLRPLLEALPERERTVLVLRF----FDSMTQTQIAERVGISQMHVSRLLA
Rv3286c|M.tuberculosis_H37Rv VLRPLLEALPERERTVLVLRF----FDSMTQTQIAERVGISQMHVSRLLA
MMAR_1248|M.marinum_M SLRPLLEALPERERTVLVLRF----FDSMTQTQIAERVGISQMHVSRLLA
MUL_2640|M.ulcerans_Agy99 SLRPLLEALPERERTVLVLRF----FDSMTQTQIAERVGISQMHVSRLLA
Mflv_4789|M.gilvum_PYR-GCK ALRPLLAALPERERTVLVLRF----FESMTQTQIAERVGISQMHVSRLLA
Mvan_1660|M.vanbaalenii_PYR-1 ALRPLLAALPERERTVLALRF----FESMTQTQIAERVGISQMHVSRLLA
TH_0241|M.thermoresistible__bu ALRPLLAALPERERTVLVLRF----FESLTQTQIAERVGISQMHVSRLLA
MSMEG_1804|M.smegmatis_MC2_155 SLRPLLASLPERERTVLVLRF----FESMTQTQIAERVGISQMHVSRLLA
MLBr_01014|M.leprae_Br4923 -IRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIER
:* :: * **: *: :** . * **. .*:*: :* ::
MAB_2511|M.abscessus_ATCC_1997 DTLRYLR-----EQMA----
MAV_2963|M.avium_104 NTLRCLR-----DQLE----
Mb3314c|M.bovis_AF2122/97 KSLARLR-----DQLE----
Rv3286c|M.tuberculosis_H37Rv KSLARLR-----DQLE----
MMAR_1248|M.marinum_M KSLARLR-----DQLE----
MUL_2640|M.ulcerans_Agy99 KSLARLR-----DQLE----
Mflv_4789|M.gilvum_PYR-GCK KSLTRLR-----DQLE----
Mvan_1660|M.vanbaalenii_PYR-1 KSLARLR-----DQLE----
TH_0241|M.thermoresistible__bu KSLARLR-----DQLE----
MSMEG_1804|M.smegmatis_MC2_155 KSLARLR-----DQLQ----
MLBr_01014|M.leprae_Br4923 DVMCKLRNGERADRLRSYAS
. : ** :::