For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
aa seq not available
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. thermoresistible (build 8) | TH_3095 | - | - | 100% (340) | putative ABC transporter, membrane spanning protein |
| M. thermoresistible (build 8) | TH_3841 | - | 2e-63 | 43.84% (333) | PUTATIVE putative ABC transporter, membrane spanning protein |
| M. thermoresistible (build 8) | TH_4004 | - | 2e-46 | 46.88% (192) | PUTATIVE putative Fe uptake system integral membrane protein |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | - | - | - | - | - |
| M. gilvum PYR-GCK | Mflv_3883 | - | 5e-65 | 44.24% (330) | transport system permease protein |
| M. tuberculosis H37Rv | - | - | - | - | - |
| M. leprae Br4923 | - | - | - | - | - |
| M. abscessus ATCC 19977 | MAB_0549c | - | 5e-64 | 43.54% (333) | putative heme/hemin ABC transporter, permease protein |
| M. marinum M | - | - | - | - | - |
| M. avium 104 | MAV_4116 | - | 2e-06 | 26.50% (351) | hypothetical protein MAV_4116 |
| M. smegmatis MC2 155 | MSMEG_4559 | - | 1e-118 | 65.84% (322) | ABC transporter, membrane spanning protein |
| M. ulcerans Agy99 | - | - | - | - | - |
| M. vanbaalenii PYR-1 | Mvan_4679 | - | 7e-05 | 26.42% (159) | hypothetical protein Mvan_4679 |
CLUSTAL 2.0.9 multiple sequence alignment
TH_3095|M.thermoresistible__bu --------------------------VSLAHRAWL-LGAFGLAALLASIA
MSMEG_4559|M.smegmatis_MC2_155 ----------------------------MRTRSLVGVWSAAMVLLVASSA
Mflv_3883|M.gilvum_PYR-GCK ------------------------MTRPVRASLPYPVLMLGLAATVLAAV
MAB_0549c|M.abscessus_ATCC_199 ------------------------MPTAQHTRSLILAVLGGLAALVLLTV
MAV_4116|M.avium_104 MPKRSLLAQARPESGSGEYVLGTWRAAALSMAVIAPAAWYGLGALLGAAV
Mvan_4679|M.vanbaalenii_PYR-1 --------------------------------------MRESSNPVFRSL
:
TH_3095|M.thermoresistible__bu VA-VTIGPSTVG-----AGEVWAVVRARLAG---PPSGLTRIQEGIVWDL
MSMEG_4559|M.smegmatis_MC2_155 LA-VTIGPAALS-----VSDVYRIIGEHLGA---GPSGATRLQDGIVWEL
Mflv_3883|M.gilvum_PYR-GCK VAGLAIGSIAIP-----PGDVARILAHQIVPNLVDPTWPAHFQT-VITQV
MAB_0549c|M.abscessus_ATCC_199 TA-LAFGTADVP-----WRDCLHFLWAGASGGSVPAVDAANYR--IVVES
MAV_4116|M.avium_104 MIPVIYALARLRRHAPQARSTAELIGAMLGRKAGTAAGIVQLLAYLVLAA
Mvan_4679|M.vanbaalenii_PYR-1 PKGQQGGYAQFG------------------------TGAAGYGAQAVHAD
. . . :
TH_3095|M.thermoresistible__bu RLPRSL---LAAACGAGLAVCGVILQSMLRNPLADPFLLGVSSGASTGAV
MSMEG_4559|M.smegmatis_MC2_155 RLPRVL---LAAACGSGLALCGAILQSLLRNPLADPFVLGVSSGASTGAV
Mflv_3883|M.gilvum_PYR-GCK RGPRVV---LGAVVGAGLAVVGMTLQALVRNPLADPYLLGVSSGASVGAV
MAB_0549c|M.abscessus_ATCC_199 RLPRVL---LAVLVGAGLSVVGVIVQAMVRNALADPYVLGISSGASVGAT
MAV_4116|M.avium_104 QFAATLGLQLLQLLSPGDDPAAIVSWLPVGAAAAALVVGATACWASTRAV
Mvan_4679|M.vanbaalenii_PYR-1 PYVTQY----PEQQQAGVSRALTIDDVVTKTGMTLAVLTAVAVVSYYLVS
.* : : . : : .
TH_3095|M.thermoresistible__bu SIVVLGVG--AGSIGLAGGAFIGAVGAFGLVLLLTVAAGGGT-DRVILAG
MSMEG_4559|M.smegmatis_MC2_155 LVAVLGVG--GGALTLSGGAFVGAVFAFSVVLVLAYASGGGT-DKVVLAG
Mflv_3883|M.gilvum_PYR-GCK AVIVTGVS-LVGALSTSAAAFAGALLACSLVYGLSRAGGRITTTRLVLAG
MAB_0549c|M.abscessus_ATCC_199 AVVVYGVLGTLGTYALSLSASLGALAATAVVYQIARTPQGLVPLRLVLVG
MAV_4116|M.avium_104 ASLAMPLVLAGLLLYVCLAVAVTALVTLSTDPVVIGSAATPRPLSGQLVG
Mvan_4679|M.vanbaalenii_PYR-1 QNLGLAMP----------FTLVGALGGLALVLIATFGRKQDN-PAIVLSY
: . *: . *
TH_3095|M.thermoresistible__bu VATTQLFSALTSFIVFTAADAEQ----------TRGVLFWLLGSLASA--
MSMEG_4559|M.smegmatis_MC2_155 VAGTQLFSALTSFIVLSSADAEQ----------TRGVLFWLLGSLAGV--
Mflv_3883|M.gilvum_PYR-GCK VAVAYVLSAVTSLMLITADGGDR----------ARQVLTWLLGGLGGA--
MAB_0549c|M.abscessus_ATCC_199 TAVGYGLSAVTTVLVFLAPNGEA----------ARSVMFWLLGSLGAS--
MAV_4116|M.avium_104 FGLGMVGVELLTVRTPRIARPGRSMSLATAVVAAAAVVLWVGDHRGVAGP
Mvan_4679|M.vanbaalenii_PYR-1 AALEGLFLGAVSFVIANIASVGG----------VGMIAQAIVGTLGVF--
. :. . : : . .
TH_3095|M.thermoresistible__bu ---------------------SWRDVAVVTALVAAGLVACLVWASSLDSF
MSMEG_4559|M.smegmatis_MC2_155 ---------------------AWSDVVTCGLVVCGGLAVCVFHARTLDAF
Mflv_3883|M.gilvum_PYR-GCK ---------------------RWDNLWLPLAVVGAGLVVLMAHGRTLNVL
MAB_0549c|M.abscessus_ATCC_199 ---------------------SWDKVPVALAATVIGILCAGGLARQLNAL
MAV_4116|M.avium_104 WRWSATMLAEAVPEFYTDEGRRWMAAAGIALAVAAALVTGWAATRAAAGL
Mvan_4679|M.vanbaalenii_PYR-1 -------------------------FGMLVVYKTGAIRVTPKFTRMIVAG
.:
TH_3095|M.thermoresistible__bu TFGEDAAAGLGVRVGPTRLGLLLVTASMTAVIVSTSGAIGFVGLVLPHVA
MSMEG_4559|M.smegmatis_MC2_155 AFGHDAAATLGVSVLRARLVLMVVTALMTAALVSAAGAIGFVGLVLPHAA
Mflv_3883|M.gilvum_PYR-GCK LAGDEAAATLGVDTQRFRVRAFVLTSLVTGVLVAVSGPIGFVGLILPHAV
MAB_0549c|M.abscessus_ATCC_199 AMGDEVSASLGLDAGRFRVALFILSAAMTGCFVSICGAVGFVGLVIPHAA
MAV_4116|M.avium_104 AAMRGATPNAGLRLTVMGLVAVVAVVVSAHGMRSIGMVILGAAPLLLMAL
Mvan_4679|M.vanbaalenii_PYR-1 LFG-------------------VVALMLLNLVLGLFGVGGGAGLGLRDGG
: . . .. :
TH_3095|M.thermoresistible__bu RALVGVAHRRLLPLSAVIGAVFLVWVDTVARVIIDP---------QELPV
MSMEG_4559|M.smegmatis_MC2_155 RFVVGPDHRRLLPTVALLGAVFMVWVDTLARTVFAP---------QELPT
Mflv_3883|M.gilvum_PYR-GCK RLLVGSDHRRALPAAALAGAGFLVLADIAARTWASP---------QEIPV
MAB_0549c|M.abscessus_ATCC_199 RLLVGADHRRVLIVAPVLGACFLVAADLVARTAIPP---------QELPL
MAV_4116|M.avium_104 YVLVAEANSRIPGDSVVAWWVRLVMPALAVVAVVKPLVDSQFAPVQVATV
Mvan_4679|M.vanbaalenii_PYR-1 AIAIGFS----LLCIALAAFSFLIDFDAADQMVRAG-------APEKAAW
:. : :: : .
TH_3095|M.thermoresistible__bu GVATALIGVPVFALILLRRRRAV------
MSMEG_4559|M.smegmatis_MC2_155 GVVTALLGVPAFAMILLRRRAGAR-----
Mflv_3883|M.gilvum_PYR-GCK GVLTALCGGPFFLWLLRRDARRADTGAAW
MAB_0549c|M.abscessus_ATCC_199 GAITAAVGVPVFVGLMRRRAMSAGAVG--
MAV_4116|M.avium_104 VAAAIGVGAAGAAPLLARHRERTAKSE--
Mvan_4679|M.vanbaalenii_PYR-1 GIALGLTVTLVWLYLEILRLLSYFNND--
: