For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
aa seq not available
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. thermoresistible (build 8) | TH_0357 | - | 100% (107) | PROBABLE RESUSCITATION-PROMOTING FACTOR RPFE | |
| M. thermoresistible (build 8) | TH_0358 | - | 1e-33 | 61.54% (104) | PROBABLE RESUSCITATION-PROMOTING FACTOR RPFE |
| M. thermoresistible (build 8) | TH_0979 | - | 1e-21 | 56.76% (74) | Probable resuscitation-promoting factor rpfB |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | Mb2477c | rpfE | 6e-34 | 80.52% (77) | resuscitation-promoting factor RpfE |
| M. gilvum PYR-GCK | Mflv_2619 | - | 6e-49 | 79.25% (106) | transglycosylase domain-containing protein |
| M. tuberculosis H37Rv | Rv2450c | rpfE | 2e-33 | 79.22% (77) | resuscitation-promoting factor RpfE |
| M. leprae Br4923 | MLBr_02151 | - | 1e-26 | 58.33% (96) | hypothetical protein MLBr_02151 |
| M. abscessus ATCC 19977 | MAB_1597 | - | 2e-44 | 74.55% (110) | hypothetical protein MAB_1597 |
| M. marinum M | MMAR_3776 | rpfE | 7e-33 | 80.00% (75) | resuscitation-promoting factor RpfE |
| M. avium 104 | MAV_1722 | - | 3e-33 | 79.22% (77) | secreted protein |
| M. smegmatis MC2 155 | MSMEG_4643 | - | 1e-49 | 82.24% (107) | resuscitation-promoting factor |
| M. ulcerans Agy99 | MUL_3723 | rpfE | 7e-32 | 77.33% (75) | resuscitation-promoting factor RpfE |
| M. vanbaalenii PYR-1 | Mvan_3962 | - | 3e-47 | 75.68% (111) | transglycosylase domain-containing protein |
CLUSTAL 2.0.9 multiple sequence alignment
Mflv_2619|M.gilvum_PYR-GCK MSGARTADQSPVLPGPGPGEVLSGLPCCAR----------PRRHDPTPAC
Mvan_3962|M.vanbaalenii_PYR-1 --------------------------------------------------
MSMEG_4643|M.smegmatis_MC2_155 --------------------------------------------------
TH_0357|M.thermoresistible__bu --------------------------------------------------
Mb2477c|M.bovis_AF2122/97 MKNARTTLIAAAIAGTLVTTSPAGIANADD-----------AGLDPNAAA
Rv2450c|M.tuberculosis_H37Rv MKNARTTLIAAAIAGTLVTTSPAGIANADD-----------AGLDPNAAA
MMAR_3776|M.marinum_M MKNVRKTLIVAAITGTLVTVPTAATANADDGLDPNAVGADTTGFDPNLPA
MUL_3723|M.ulcerans_Agy99 MKNVRKTLIVAAITETFVTVPTAATANADDGLDPNAVGADTTGFDPNLPA
MAV_1722|M.avium_104 -----------------------------------------MGFDPNVPA
MAB_1597|M.abscessus_ATCC_1997 MKYVRKTLTTRAVL---------------------------WAMAPALVA
MLBr_02151|M.leprae_Br4923 --------------------------------------------------
Mflv_2619|M.gilvum_PYR-GCK YRHHARVTLPCLAGA-----------------------------------
Mvan_3962|M.vanbaalenii_PYR-1 --------------------------------------------------
MSMEG_4643|M.smegmatis_MC2_155 --------------------------------------------------
TH_0357|M.thermoresistible__bu --------------------------------------------------
Mb2477c|M.bovis_AF2122/97 GP-----DAVGFDPN-----------LPPAP-------------------
Rv2450c|M.tuberculosis_H37Rv GP-----DAVGFDPN-----------LPPAP-------------------
MMAR_3776|M.marinum_M APGAFEPPAPQDAPPAPELADADPDLPPPAPDAMIAPVDMPEAPAPEEAP
MUL_3723|M.ulcerans_Agy99 APGAFEPPAPQDAPPAPELADADPDLPPPAPDAMIA--------------
MAV_1722|M.avium_104 AG-----PAP-DAP------------PPPAP-------------------
MAB_1597|M.abscessus_ATCC_1997 AP------------------------------------------------
MLBr_02151|M.leprae_Br4923 --------------------------------------------------
Mflv_2619|M.gilvum_PYR-GCK -----------------DGARSAKGQKLKNIRNTFG-------LATIAGA
Mvan_3962|M.vanbaalenii_PYR-1 ---------------------------MKNIRKTFG-------LATIAGA
MSMEG_4643|M.smegmatis_MC2_155 ---------------------------MKNIRKTFG-------LGIVAGA
TH_0357|M.thermoresistible__bu ---------------------------LKHIRKTLG-------LATFAGA
Mb2477c|M.bovis_AF2122/97 ---------------------DAAPVDTPPAPEDAG-FDP-NLPPPLAPD
Rv2450c|M.tuberculosis_H37Rv ---------------------DAAPVDTPPAPEDAG-FDP-NLPPPLAPD
MMAR_3776|M.marinum_M PAPQDAPPAPEAMIAPVDMPDGPAPEDAPPAPDAFAPPAPEDVPPAPEPV
MUL_3723|M.ulcerans_Agy99 ---------------PVDMPDGPAPEDAPPAPDAFAPPAPEDVPPAPEPV
MAV_1722|M.avium_104 -----------------DAPPAPAP-DAPPAPDAPPPPAP-DAPPPPAPD
MAB_1597|M.abscessus_ATCC_1997 --------------------------------------------MALAGT
MLBr_02151|M.leprae_Br4923 --------------------MSESYRKLTTSSIIVA-------KITFTGA
Mflv_2619|M.gilvum_PYR-GCK LAVAPLAL-----AGTANADGVNWDAVAACESGGNWSINTGNGYYGGLQF
Mvan_3962|M.vanbaalenii_PYR-1 LAVAPMAVVTGVAAGTANADSVNWDAVAACESGGNWSINTGNGYYGGLQF
MSMEG_4643|M.smegmatis_MC2_155 LAVAPVALG----AGTANADSVNWDAIASCESGGNWSINTGNGYYGGLQF
TH_0357|M.thermoresistible__bu LAVAPIAL-----AGTASADSVNWDAIAACESGGNWSINTGNGYYGGLQF
Mb2477c|M.bovis_AF2122/97 FLSPPAEEA----PPVPVAYSVNWDAIAQCESGGNWSINTGNGYYGGLQF
Rv2450c|M.tuberculosis_H37Rv FLSPPAEEA----PPVPVAYSVNWDAIAQCESGGNWSINTGNGYYGGLRF
MMAR_3776|M.marinum_M AFEPPAPDVA--PPPAPKVYTVNWDAIAQCESGGNWGINTGNGYSGGLQF
MUL_3723|M.ulcerans_Agy99 AFEPPAPDVA--PPPAPKVYTVNWDAIAQCEPGGNWGINTGNGYSGGLQF
MAV_1722|M.avium_104 APPAPGPDVP--PPPAPKAYSVNWDAIAQCESGGNWGINTGNGYAGGLQF
MAB_1597|M.abscessus_ATCC_1997 ASADP----------------VNWDAIAACESGGNWGINTGNGYYGGLQF
MLBr_02151|M.leprae_Br4923 MLDGSIALAG----QASPATDSEWDQVARCESGGNWSINTGNGYLGGLQF
. :** :* **.****.******* ***:*
Mflv_2619|M.gilvum_PYR-GCK TMGTWQSNGG---SGSPHHASREEQIRVANNVLQTQGIGAWPTCGG--RG
Mvan_3962|M.vanbaalenii_PYR-1 TMGTWQSNGG---SGSPHHASREEQIRVANNVLQTQGIGAWPSCGA--RG
MSMEG_4643|M.smegmatis_MC2_155 NLGTWRSHGG---AGMPHQASRSEQIRVAENVLRTQGIGAWPVCGK--RG
TH_0357|M.thermoresistible__bu SLSTWRANGG---TGMPHQASRAEQIRVAENTLRSQGIGAWPTCGK--RG
Mb2477c|M.bovis_AF2122/97 TAGTWRANGG---SGSAANASREEQIRVAENVLRSQGIRAWPVCGR--RG
Rv2450c|M.tuberculosis_H37Rv TAGTWRANGG---SGSAANASREEQIRVAENVLRSQGIRAWPVCGR--RG
MMAR_3776|M.marinum_M TASTWRANGG---AGSAAGASREEQIRVAENVLRSQGIGAWPVCGR--RG
MUL_3723|M.ulcerans_Agy99 TASTWRASGG---AGSAAGASREEQIRVAENVLRSQGIGAWPVCGR--RG
MAV_1722|M.avium_104 TSSTWHANGG---SGSPAGASREEQIRVAENVLHSQGIGAWPVCGR--RG
MAB_1597|M.abscessus_ATCC_1997 NLGTWRANGG---SGSPHLASREEQIRVAENVLARQGIGAWPVCGR--RG
MLBr_02151|M.leprae_Br4923 SQGTWASHGGGEYAPSAQLATREQQIAVAERVLATQGSGAWPACGHGLSG
. .** : ** : . *:* :** **:..* ** *** ** *
Mflv_2619|M.gilvum_PYR-GCK --------------------------------------------------
Mvan_3962|M.vanbaalenii_PYR-1 --------------------------------------------------
MSMEG_4643|M.smegmatis_MC2_155 --------------------------------------------------
TH_0357|M.thermoresistible__bu --------------------------------------------------
Mb2477c|M.bovis_AF2122/97 --------------------------------------------------
Rv2450c|M.tuberculosis_H37Rv --------------------------------------------------
MMAR_3776|M.marinum_M --------------------------------------------------
MUL_3723|M.ulcerans_Agy99 --------------------------------------------------
MAV_1722|M.avium_104 --------------------------------------------------
MAB_1597|M.abscessus_ATCC_1997 --------------------------------------------------
MLBr_02151|M.leprae_Br4923 PSLQEVLPAGMGAPWINGAPAPLAPPPPAEPAPPQPPADNFPPTPGDVPS
Mflv_2619|M.gilvum_PYR-GCK -----
Mvan_3962|M.vanbaalenii_PYR-1 -----
MSMEG_4643|M.smegmatis_MC2_155 -----
TH_0357|M.thermoresistible__bu -----
Mb2477c|M.bovis_AF2122/97 -----
Rv2450c|M.tuberculosis_H37Rv -----
MMAR_3776|M.marinum_M -----
MUL_3723|M.ulcerans_Agy99 -----
MAV_1722|M.avium_104 -----
MAB_1597|M.abscessus_ATCC_1997 -----
MLBr_02151|M.leprae_Br4923 PLARP