For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
aa seq not available
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. thermoresistible (build 8) | TH_0352 | clpP | - | 100% (196) | PROBABLE ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 1 CLPP1 (ENDOPEPTIDASE CLP) |
| M. thermoresistible (build 8) | TH_3079 | - | 5e-42 | 51.16% (172) | PUTATIVE Clp protease |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | Mb2488c | clpP | 3e-98 | 92.67% (191) | ATP-dependent Clp protease proteolytic subunit |
| M. gilvum PYR-GCK | Mflv_2588 | clpP | 2e-98 | 89.74% (195) | ATP-dependent Clp protease proteolytic subunit |
| M. tuberculosis H37Rv | Rv2461c | clpP | 3e-98 | 92.67% (191) | ATP-dependent Clp protease proteolytic subunit |
| M. leprae Br4923 | MLBr_01480 | clpP | 4e-97 | 91.10% (191) | ATP-dependent Clp protease proteolytic subunit |
| M. abscessus ATCC 19977 | MAB_1581 | clpP | 3e-91 | 84.10% (195) | ATP-dependent Clp protease proteolytic subunit |
| M. marinum M | MMAR_3808 | clpP | 6e-96 | 91.15% (192) | ATP-dependent Clp protease proteolytic subunit ClpP1 |
| M. avium 104 | MAV_1713 | clpP | 4e-97 | 93.05% (187) | ATP-dependent Clp protease proteolytic subunit |
| M. smegmatis MC2 155 | MSMEG_4673 | clpP | 1e-101 | 94.76% (191) | ATP-dependent Clp protease proteolytic subunit |
| M. ulcerans Agy99 | MUL_3731 | clpP | 4e-96 | 91.15% (192) | ATP-dependent Clp protease proteolytic subunit |
| M. vanbaalenii PYR-1 | Mvan_4040 | clpP | 1e-98 | 90.21% (194) | ATP-dependent Clp protease proteolytic subunit |
CLUSTAL 2.0.9 multiple sequence alignment
Mflv_2588|M.gilvum_PYR-GCK ----MSFVRPVTASEVHKESRYP---VVTDMRGASSGLNLVDSVYERLLA
Mvan_4040|M.vanbaalenii_PYR-1 ------------------------------MRGASSGLNLVDSVYERLLS
MSMEG_4673|M.smegmatis_MC2_155 ---------------------------MTDMRGTGQGLNLVDSVYERLLA
TH_0352|M.thermoresistible__bu ------------------------------MRSAGQGLNLVDSVYERLLA
Mb2488c|M.bovis_AF2122/97 ------------------------MSQVTDMRSNSQGLSLTDSVYERLLS
Rv2461c|M.tuberculosis_H37Rv ------------------------MSQVTDMRSNSQGLSLTDSVYERLLS
MMAR_3808|M.marinum_M ---------------------------MTDMRSNSQGLNLTDSVYERLLS
MUL_3731|M.ulcerans_Agy99 ---------------------------MTDMRSNSQGLNLTDSVYERLLS
MLBr_01480|M.leprae_Br4923 MIAKQRARFVSVGAYRTPESRYPTVGHVTDIRSNSQGFNLTDSVYERLLS
MAV_1713|M.avium_104 ---------------------------MSDMRSPSQGLNLTDSVYERLLS
MAB_1581|M.abscessus_ATCC_1997 ------------------------------MRSATAGLNLIDSVYERLLS
:*. *:.* ********:
Mflv_2588|M.gilvum_PYR-GCK ERIIFLGSQVDDDIANRLCAQILLLSAEDPTKDIHLYINSPGGSISAGMA
Mvan_4040|M.vanbaalenii_PYR-1 ERIIFLGSQVDDDIANRLCAQILLLSAEDPTKDIHLYINSPGGSISAGMA
MSMEG_4673|M.smegmatis_MC2_155 ERIIFLGSQVDDDIANRLCAQILLLSAEDPTKDIHLYINSPGGSISAGMA
TH_0352|M.thermoresistible__bu ERIIFLGSQVDDEIANRLCAQILLLAAEDPTKDISLYINSPGGSISAGMA
Mb2488c|M.bovis_AF2122/97 ERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMA
Rv2461c|M.tuberculosis_H37Rv ERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMA
MMAR_3808|M.marinum_M ERIIFLGSEVNDEVANRLCAQILLLAAEDASKDINLYINSPGGSISAGMA
MUL_3731|M.ulcerans_Agy99 ERIIFLGSEVNDEVANRLCAQILLLAAEDASKDINLYINSPGGSISAGMA
MLBr_01480|M.leprae_Br4923 ERIIFLGSEVNDNIANRLCAQILLLAAEDAFKDISLYINSPGGSISAGMA
MAV_1713|M.avium_104 ERIIFLGSEVNDDVANRLCAQILLLAAEDPTKDISLYINSPGGSISAGMA
MAB_1581|M.abscessus_ATCC_1997 ERIIFLGQQVDDDIANKLCAQILLLTAEDPTKDIHLYINSPGGSISAGMA
*******.:*:*::**:********:***. *** ***************
Mflv_2588|M.gilvum_PYR-GCK IYDTMVLAPCDVATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPL
Mvan_4040|M.vanbaalenii_PYR-1 IYDTMVLAPCDVATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPL
MSMEG_4673|M.smegmatis_MC2_155 IYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPL
TH_0352|M.thermoresistible__bu IYDTMVLAPCDIATYAMGMAASMGQFLLAAGTKGKRYALPHARILMHQPL
Mb2488c|M.bovis_AF2122/97 IYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPL
Rv2461c|M.tuberculosis_H37Rv IYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPL
MMAR_3808|M.marinum_M IYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPL
MUL_3731|M.ulcerans_Agy99 IYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPL
MLBr_01480|M.leprae_Br4923 IYDTMVLAPCDIATYAMGMAASMGEFLLAAGTRGKRYALPHARILMHQPL
MAV_1713|M.avium_104 IYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPL
MAB_1581|M.abscessus_ATCC_1997 IFDTMQLSECDIATYAMGMAASMGEFLLAAGTKGKRHALPHARILMHQPL
*:*** *: **:************:*******:***:*************
Mflv_2588|M.gilvum_PYR-GCK GGITGGAADIAIQAEQFASIKKEMFRLNAEFTGQTIERIEADSDRDRWFT
Mvan_4040|M.vanbaalenii_PYR-1 GGITGGAADIAIQAEQFAVIKKEMFRLNAEFTGQTIERIEADSDRDRWFT
MSMEG_4673|M.smegmatis_MC2_155 GGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFT
TH_0352|M.thermoresistible__bu GGVTGSAADIAIQAEQFALIKKEMFRLNAEFTGQPIERIEADSDRDRWFT
Mb2488c|M.bovis_AF2122/97 GGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFT
Rv2461c|M.tuberculosis_H37Rv GGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFT
MMAR_3808|M.marinum_M GGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQSIERIEADSDRDRWFT
MUL_3731|M.ulcerans_Agy99 GGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQSIERIEADSDRDRWFT
MLBr_01480|M.leprae_Br4923 GGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFT
MAV_1713|M.avium_104 GGVTGSAADIAIQAEQFHVIKKEMFRLNAEFTGQSIERIEADSDRDRWFT
MAB_1581|M.abscessus_ATCC_1997 GGVTGSASDIAIQAEQFQVIKKEMFRLNAEFTGKSIEQIEQDSDRDRWFT
**:**.*:********* **************:.**:** *********
Mflv_2588|M.gilvum_PYR-GCK AQEALEYGFVDHIITS-VNFN-GANNS-----
Mvan_4040|M.vanbaalenii_PYR-1 AQEALEYGFVDHIITS-TNVN-GVTS------
MSMEG_4673|M.smegmatis_MC2_155 AQEALEYGFVDHIITS-ASVN-GEGPGAGLDK
TH_0352|M.thermoresistible__bu AQEALEYGFVDHVITR-ADVN-GVSNA-----
Mb2488c|M.bovis_AF2122/97 AAEALEYGFVDHIITR-AHVN-GEAQ------
Rv2461c|M.tuberculosis_H37Rv AAEALEYGFVDHIITR-AHVN-GEAQ------
MMAR_3808|M.marinum_M APEALEYGFVDHIITRAAHVN-GEAQ------
MUL_3731|M.ulcerans_Agy99 APEALEYGFVDHIITRAAHVN-GEAQ------
MLBr_01480|M.leprae_Br4923 ASEALEYGFVDHIITR-AHVN-GEVQ------
MAV_1713|M.avium_104 AQEALEYGFVDHIITRAATITNGEAQ------
MAB_1581|M.abscessus_ATCC_1997 APEALEYGFVDKIITR-GNLN-GSKGASK---
* *********::** .. *