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VYVRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADLPLIRVGTDRAVI STIVVNDGRECAVDLEIATGRVNKARLNRSSVRSTRDVVGVLRAVLFAPEDLGLVRGDPADRRRYLDDLA IVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRGDRGVFDTLEVWDSRLAEHGAELVAARIDLVNQLAP EVKKAYQLLAPESRSASIGYRASMDVTGPSEQSDIDRQLLAARLLAALAARRDAELERGVCLVGPHRDDL ILRLGDQPAKGFASHGEAWSLAVALRLAAYQLLRVDGGEPVLLLDDVFAELDVMRRRALATAAESAEQVL VTAAVLEDIPAGWDARRVHIDVRADDTGSMSVVLP
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. tuberculosis H37Rv | Rv0003 | recF | - | 100% (385) | recombination protein F |
| M. tuberculosis H37Rv | Rv2922c | smc | 2e-05 | 47.73% (44) | chromosome partition protein Smc |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | Mb0003 | recF | 0.0 | 99.48% (385) | recombination protein F |
| M. gilvum PYR-GCK | Mflv_0824 | recF | 1e-156 | 70.57% (384) | recombination protein F |
| M. leprae Br4923 | MLBr_00003 | recF | 1e-168 | 76.62% (385) | recombination protein F |
| M. abscessus ATCC 19977 | MAB_0004 | recF | 1e-143 | 67.89% (383) | recombination protein F |
| M. marinum M | MMAR_0003 | recF | 1e-175 | 81.20% (383) | DNA replication and repair protein RecF |
| M. avium 104 | MAV_0003 | recF | 1e-168 | 77.14% (385) | recombination protein F |
| M. smegmatis MC2 155 | MSMEG_0003 | recF | 1e-155 | 72.09% (387) | recombination protein F |
| M. thermoresistible (build 8) | - | - | - | - | - |
| M. ulcerans Agy99 | MUL_0003 | recF | 1e-174 | 80.94% (383) | recombination protein F |
| M. vanbaalenii PYR-1 | Mvan_0004 | recF | 1e-156 | 71.88% (384) | recombination protein F |
CLUSTAL 2.0.9 multiple sequence alignment
Mflv_0824|M.gilvum_PYR-GCK -------------------MYVRHLALTDFRSWSRVELELSPGRTVFVGP
Mvan_0004|M.vanbaalenii_PYR-1 -------------------MYVRHLALTDFRSWARVELELEPGRTVFVGS
MSMEG_0003|M.smegmatis_MC2_155 -------------------MFARHLGLTDFRSWARVDLDLEPGRTVFVGP
Rv0003|M.tuberculosis_H37Rv -------------------MYVRHLGLRDFRSWACVDLELHPGRTVFVGP
Mb0003|M.bovis_AF2122/97 -------------------MYVRHLGLRDFRSWACVDLELHPGRTVFVGP
MLBr_00003|M.leprae_Br4923 -------------------MYVRHFGLRDFRSWDHVDLELNPGRTVFFGP
MMAR_0003|M.marinum_M -------------------MYVRHLGLRDFRSWAHADLELGPGRTVFVGP
MUL_0003|M.ulcerans_Agy99 -------------------MYVRHLGLRDFRSWAHADLELGPGRTVFVGP
MAV_0003|M.avium_104 -------------------MYVRHLGLRDFRSWAHADLELQPGRTVFIGS
MAB_0004|M.abscessus_ATCC_1997 MATRSSAWAFPAEGGARTEVYVRQLGLRDFRSWERVNLELEPGRTVFVGP
::.*::.* ***** .:*:* ******.*.
Mflv_0824|M.gilvum_PYR-GCK NGFGKTNLVEALWYSATLGSHRVASDAPLIRAGAERAVVSTIIVNEGREL
Mvan_0004|M.vanbaalenii_PYR-1 NGFGKTNLIEALWYSATLGSHRVASDAPLIRAGAERAVVSTIVVNDGREL
MSMEG_0003|M.smegmatis_MC2_155 NGFGKTNLVEALWYSATLGSHRVATDAPLIRAGAERAIVSTIVVNEGREL
Rv0003|M.tuberculosis_H37Rv NGYGKTNLIEALWYSTTLGSHRVSADLPLIRVGTDRAVISTIVVNDGREC
Mb0003|M.bovis_AF2122/97 NGYGKTNLIEALWYSTTLGSHRVSADLPLIRVGTDRAVISTIVVNDGREC
MLBr_00003|M.leprae_Br4923 NGNGKTNLIEALWYSTTLSSHRVGTDIPLIRAGTIRAIVSTIVVNEGREC
MMAR_0003|M.marinum_M NGFGKTNIIEALWYSATLGSHRVGTDAPLIRAGADRAVISTIVVNDGREC
MUL_0003|M.ulcerans_Agy99 NGFGKTNIIEALWYSATLGSHRVGTDAPLIRAGADRAVISTIVVNDGREC
MAV_0003|M.avium_104 NGFGKTNLLEALWYSSTLGSHRVGTDAPLIRAGADRTVVSTIVVNDGREC
MAB_0004|M.abscessus_ATCC_1997 NGYGKTNLVEALWYSSTLGSHRVATDAPLIRTGAERAVVSTIVVNDGREL
** ****::******:**.****.:* ****.*: *:::***:**:***
Mflv_0824|M.gilvum_PYR-GCK AVDLDITSGRANKARLNRSPVRSAREILGVLRAVLFAPEDLALVRGDPGD
Mvan_0004|M.vanbaalenii_PYR-1 AVDLDITSGRANKARLNRSPVRSAREILGVLRAVLFAPEDLALVRGDPGE
MSMEG_0003|M.smegmatis_MC2_155 AVDLEITSGRANKARLNRSPVRSAREILGVLRAVLFSPEDLSLVRGDPGD
Rv0003|M.tuberculosis_H37Rv AVDLEIATGRVNKARLNRSSVRSTRDVVGVLRAVLFAPEDLGLVRGDPAD
Mb0003|M.bovis_AF2122/97 AVDLEIATGRVNKARLNRSSVRSTRDVVGVLRAVLFAPEDLGLVRGDPAD
MLBr_00003|M.leprae_Br4923 AIDLEIAAGRANRARLNRSLVRGMREVVGVLRAVLFAPEDLALVCGDPAN
MMAR_0003|M.marinum_M AVDLEIAAGRANKARLNRSPVRSTREVIGVLRAVLFAPEDLALVRGDPAD
MUL_0003|M.ulcerans_Agy99 AVDLEIAAGRANKARLNRSPVRSTREVIGVLRAVLFAPEDLALVRGDPAD
MAV_0003|M.avium_104 AVDLEIAAGRANKARLNRSPVRSTREVLGVLRAVLFAPEDLALVRGDPSE
MAB_0004|M.abscessus_ATCC_1997 AIDLEIAAGRANKARVNRSPVRSPREVLGILHAVLFAPEDLSLVRGDPAD
*:**:*::**.*:**:*** **. *:::*:*:****:****.** ***.:
Mflv_0824|M.gilvum_PYR-GCK RRRYLDELATTRRPRIAAVRADYDKVVRQRTALLKT-ASSARFRGDRGAL
Mvan_0004|M.vanbaalenii_PYR-1 RRRYLDELATTRRPRIAAVRADYDKVVRQRTALLKT-ASGARYRGDRGAL
MSMEG_0003|M.smegmatis_MC2_155 RRRYLDELATTRRPALAGVRADYDKVVRQRTALLKT-AAGARYRGDRSVI
Rv0003|M.tuberculosis_H37Rv RRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKS-VPGARYRGDRGVF
Mb0003|M.bovis_AF2122/97 RRRYLDDLAIVRRPAIAAVRAEYERVVRQRTALLKS-VPGARYRGDRGVF
MLBr_00003|M.leprae_Br4923 RRRYLDDLATVRQPVIAAVRADYDKVLRQRTALLKS-LAAARYRSDQGVL
MMAR_0003|M.marinum_M RRRYLDDLATLRRPTIAGVRADYDKVLRQRTALLKS-VSGARFRGDRGAL
MUL_0003|M.ulcerans_Agy99 RRRYLDDLATLRRPTIAGVRADYDKVLRQRTALLKS-VSGARFRGDRGAL
MAV_0003|M.avium_104 RRRYLDDLATLRRPAIAAVRADYDKVLRQRTALLKS-LSGARHRGDRGAL
MAB_0004|M.abscessus_ATCC_1997 RRRFLDDLLIQRRPRMAGVRADYDKVLRQRTALLKTAMAALRQRHDQSVL
***:**:* *:* :*.***:*::*:********: .. * * *:..:
Mflv_0824|M.gilvum_PYR-GCK ETLDVWDGHLAAHGAQLIAARVDLVHELAPEVEKAYQLLAPASRPATVRY
Mvan_0004|M.vanbaalenii_PYR-1 ETLDVWNGHLASHGAQLISARVQLVNELAPEVEKAYQLLAPGSRPAAIRY
MSMEG_0003|M.smegmatis_MC2_155 DTLEVWDGHLAAHGAALVASRVKLVEELQPEVEKAYQLLAPASRPAAIRY
Rv0003|M.tuberculosis_H37Rv DTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGY
Mb0003|M.bovis_AF2122/97 DTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGY
MLBr_00003|M.leprae_Br4923 DTLDVWDTRLAEHGAELMAARIDLVNQLAPEVEKAYQLLAPGSRTASISY
MMAR_0003|M.marinum_M DTLDVWDSRLAQHGAELMAARIDLVRLLAPEVEKAYQLLAPESRSAAIAY
MUL_0003|M.ulcerans_Agy99 DTLDVWDSRLAQHGAELMAARIDLVRLLAPEVEKAYQLLAPESRSAAIAY
MAV_0003|M.avium_104 DTLDVWDSRLAEYGAQLMAARIDLVNQLAPEVEKAYQLLAPGSRAASIGY
MAB_0004|M.abscessus_ATCC_1997 DTLDVWDGHLVAHGAELLSARIELVGELHPLVEKSYQLLAPASRPADIAY
:**:**: :*. :** *:::*:.** * * *:*:****** **.* : *
Mflv_0824|M.gilvum_PYR-GCK RSGVEVVEAEAAAGNSDPEVFEAALLDALSRRRDAELERGVCLVGPHRDD
Mvan_0004|M.vanbaalenii_PYR-1 RSGVDVVEAEAAAGNSDEEMFEAALLDALSRRRDAELERGVCLVGPHRDD
MSMEG_0003|M.smegmatis_MC2_155 RSSVEAIED--APGPESVEFYEAALLDALARRRDAELERGVCLVGPHRDD
Rv0003|M.tuberculosis_H37Rv RASMDVTGP-SEQSDIDRQLLAARLLAALAARRDAELERGVCLVGPHRDD
Mb0003|M.bovis_AF2122/97 RASMDVTGP-SEQSDTDRQLLAARLLAALAARRDAELERGVCLVGPHRDD
MLBr_00003|M.leprae_Br4923 RASLDIGGI-AGVGSSDRALLQADLLAGLSTRRNVELERGICLVGPHRDE
MMAR_0003|M.marinum_M RASMDAFVA-ADDAAPDRVTLEEGLLAALAARRDAELERGVCLVGPHRDD
MUL_0003|M.ulcerans_Agy99 RASMDAFVA-ADDAAPDRVALEEGLLAALAARRDAELERGVCLVGPHRDD
MAV_0003|M.avium_104 RSSLGAAAA-AEVNAGDRDYLEAALLAGLAARRYAELERGVCLVGPHRDD
MAB_0004|M.abscessus_ATCC_1997 RSSVEGVEA-----GLSVEHLADALQAGLVAKRSAEIERGVCLVGPHRDD
*:.: . * .* :* .*:***:********:
Mflv_0824|M.gilvum_PYR-GCK LELRLGDQPAKGFASHGESWSMALSLRLAAYELLRADGSDPVLLLDDVFA
Mvan_0004|M.vanbaalenii_PYR-1 LELRLGDQVAKGFASHGESWSMALALRLAAYELLRVEGSDPVLLLDDVFA
MSMEG_0003|M.smegmatis_MC2_155 LELRLGDQPAKGFASHGESWSMALALRLGAYELLCSDGVEPVLLLDDVFA
Rv0003|M.tuberculosis_H37Rv LILRLGDQPAKGFASHGEAWSLAVALRLAAYQLLRVDGGEPVLLLDDVFA
Mb0003|M.bovis_AF2122/97 LILRLGDQPAKGFASHGEAWSLAVALRLAAYQLLRVDGGEPVLLLDDVFA
MLBr_00003|M.leprae_Br4923 LELRLGDQPAKGFASHGESWSLAIALRLAAYELLRADGNEPVLLLDDVFA
MMAR_0003|M.marinum_M LELRLGDQPAKGFASHGESWSMAVALRLAAFALLRADGSEPVLLLDDVFA
MUL_0003|M.ulcerans_Agy99 LELRLGDQPAKGFASHGESWSMAVALRLAAFALLRADGSEPVLLLDDVFA
MAV_0003|M.avium_104 LELWLGEQVAKGFASHGESWSLALSLRLAAYELLRADESDPVLLLDDVFA
MAB_0004|M.abscessus_ATCC_1997 LELRLGDGPAKGFASHGESWSFALALRLAAFDLLRADGTDPVLMLDDVFA
* * **: *********:**:*::***.*: ** : :***:******
Mflv_0824|M.gilvum_PYR-GCK ELDSARRQALAQVAASAEQVLVTAAVGEDIPVDWDARRIEIAMTDSDLGR
Mvan_0004|M.vanbaalenii_PYR-1 ELDSARRQALAQVAATAEQVLVTAAVEEDIPAEWDARRIGITMQDSDGGR
MSMEG_0003|M.smegmatis_MC2_155 ELDTSRRRALATVAGSAEQVLVTAAVGEDIPEDWDARRVEIRMVEDDGGR
Rv0003|M.tuberculosis_H37Rv ELDVMRRRALATAAESAEQVLVTAAVLEDIPAGWDARRVHIDVRADDTGS
Mb0003|M.bovis_AF2122/97 ELDVMRRRALATAAESAEQVLVTAAVLEDIPAGWDARRVHIDVRADDTGS
MLBr_00003|M.leprae_Br4923 ELDAARCRALATVAESAEQVLVTSAAQEDIPVGWDAKWVTVDLRDSDSGR
MMAR_0003|M.marinum_M ELDAARRTALARVAESAEQVLVTAAVLEDIPSGWDARKVHIDLRDSADGR
MUL_0003|M.ulcerans_Agy99 ELDAARRTALARVAESAEQVLVTAAVLEDIPSGWDARKVHIDLRDSADGR
MAV_0003|M.avium_104 ELDAARRRALAAVAESAEQVLVTAAVLEDIPAGWQARRLFVELRDTDAGR
MAB_0004|M.abscessus_ATCC_1997 ELDGARRRSLATVAADAEQVLVTAAVPDDVPEELSARTVTVEVQEGPAGR
*** * :** .* *******:*. :*:* .*: : : : *
Mflv_0824|M.gilvum_PYR-GCK VSVLSGVTQ
Mvan_0004|M.vanbaalenii_PYR-1 ISVVRT---
MSMEG_0003|M.smegmatis_MC2_155 VSMVAS---
Rv0003|M.tuberculosis_H37Rv MSVVLP---
Mb0003|M.bovis_AF2122/97 MSVVLP---
MLBr_00003|M.leprae_Br4923 VSVVYP---
MMAR_0003|M.marinum_M VSVVQS---
MUL_0003|M.ulcerans_Agy99 VSAVQS---
MAV_0003|M.avium_104 VSELRP---
MAB_0004|M.abscessus_ATCC_1997 KSVAHE---
*