For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
MTNTLLPAVLACAVVAAAATAGPASAEPGPTAPADFVSLSDIDPSILLDIRYSAPHNFTGDPVDGYQAPM CLLTRPAAYALRDAQQEFLEQGYSLKVYDCYRPQRAVNDFVEWAKNLTDQRMKAEFYPRVDKTRLFADGY IAEKSGHSRGSTVDLTLVALPASQEPAYVPGQPLVDCAAPVNQRFPDVSVDMGTGYDCFDTLAHTLDPRI QGEQLKNRLLLKEGLERHGLQNYELEWWHYTFKPETHPETYFDFPVAPSSLTE
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. vanbaalenii PYR-1 | Mvan_4724 | - | - | 100% (263) | peptidase M15D, vanX D-ala-D-ala dipeptidase |
| M. vanbaalenii PYR-1 | Mvan_5181 | - | 3e-13 | 27.91% (258) | peptidase M15D, vanX D-ala-D-ala dipeptidase |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | - | - | - | - | - |
| M. gilvum PYR-GCK | Mflv_1575 | - | 4e-10 | 26.07% (234) | peptidase M15D, vanX D-ala-D-ala dipeptidase |
| M. tuberculosis H37Rv | - | - | - | - | - |
| M. leprae Br4923 | - | - | - | - | - |
| M. abscessus ATCC 19977 | MAB_1843 | - | 4e-12 | 27.62% (239) | D-alanyl-D-alanine dipeptidase |
| M. marinum M | MMAR_4800 | lpqR | 2e-11 | 28.75% (240) | lipoprotein, LpqR |
| M. avium 104 | MAV_0853 | ddpX | 2e-12 | 26.42% (246) | D-alanyl-D-alanine dipeptidase |
| M. smegmatis MC2 155 | - | - | - | - | - |
| M. thermoresistible (build 8) | - | - | - | - | - |
| M. ulcerans Agy99 | MUL_0369 | lpqR | 2e-11 | 28.33% (240) | lipoprotein, LpqR |
CLUSTAL 2.0.9 multiple sequence alignment
MMAR_4800|M.marinum_M ------------MRRVGAAAALVACGVACGITAAPSGVWTSPGGSSIPSP
MUL_0369|M.ulcerans_Agy99 MSSIADALHRGPLRRVGAAAALVAC----GITAVPSGVWTSPGGSSIPSP
MAV_0853|M.avium_104 ------------MR-----LAWVLR------------------------L
Mflv_1575|M.gilvum_PYR-GCK --------------------------------------------------
MAB_1843|M.abscessus_ATCC_1997 -----------------MMKRLILG----------------------FGY
Mvan_4724|M.vanbaalenii_PYR-1 -----------------------------------------------MTN
MMAR_4800|M.marinum_M PVVTSAVRAVATTASVPAGSVPPVSAAAAAAGLVDVRSVVPDAIIDLRYA
MUL_0369|M.ulcerans_Agy99 PVVTSAVRAVATTASVPAGSVPPVSAAAAAAGLVDVRSVVPDAIIDLRYA
MAV_0853|M.avium_104 TIAASLVAAGGTRTAEASPDVPPVSEAAKAAGFVDIRSVIPDAVLDLRYA
Mflv_1575|M.gilvum_PYR-GCK -----MATMGSSATGSAAP-IPPLSDAARAAGFVDVRAVVPDAVIDLRYA
MAB_1843|M.abscessus_ATCC_1997 AALGIGCALGQVAPASADPDIPPVSEAARAAGLVDVRTVVPDAVIDLRYA
Mvan_4724|M.vanbaalenii_PYR-1 TLLPAVLACAVVAAAATAGPASAEPGPTAPADFVSLSDIDPSILLDIRYS
.. . .. . .: .*.:*.: : *. ::*:**:
MMAR_4800|M.marinum_M TTNNFTRTQLY-PADARCLVHESMAPGLTAAAAALRPQGQALVFWDCYRP
MUL_0369|M.ulcerans_Agy99 TTNNFTRTQLY-PADARCLVHESMAPGLTAAAAALRPQGQALVFWDCYRP
MAV_0853|M.avium_104 TSNNFTHTQLY-PSDARCLVHQSMAPGLAAAAGALRPQGHLLVFWDCYRP
Mflv_1575|M.gilvum_PYR-GCK TSNNFVGIPLY-PPTARCLVHESLAGGLATAARLLRAGGERLVFWDCYRP
MAB_1843|M.abscessus_ATCC_1997 TTNNFTGVQLY-PAGARCLVHESMAPGLKTAADTLRTNGERLVFWDCYRP
Mvan_4724|M.vanbaalenii_PYR-1 APHNFTGDPVDGYQAPMCLLTRPAAYALRDAQQEFLEQGYSLKVYDCYRP
:.:**. : . **: .. * .* * : * * .:*****
MMAR_4800|M.marinum_M ----------------HDVQVKMFQVVPNPAWVARPGQYARS-HEAGRSV
MUL_0369|M.ulcerans_Agy99 ----------------HDVQVKMFQVVPNPAWVARPGQYARS-HEAGRSV
MAV_0853|M.avium_104 ----------------HDVQVKMFSLVPNPAWVARPGAYARS-HESGRSV
Mflv_1575|M.gilvum_PYR-GCK ----------------HAVQARMFEVVPNPAWVARPGPYARS-HVAGRSV
MAB_1843|M.abscessus_ATCC_1997 ----------------HEVQVRMFQVVPNPNWVAKPGQYARS-HEAGRSV
Mvan_4724|M.vanbaalenii_PYR-1 QRAVNDFVEWAKNLTDQRMKAEFYPRVDKTRLFADGYIAEKSGHSRGSTV
: ::..:: * :. .* :* * * :*
MMAR_4800|M.marinum_M DVTYASVSPQCPPQRQISG--------------ICLADMGTDFDDFSARA
MUL_0369|M.ulcerans_Agy99 DVTYANVSPQCPPQRQISG--------------ICLADMGTDFDDFSARA
MAV_0853|M.avium_104 DVTFTTAQQACSSGLHAGG--------------LCLADMGTDFDDFTSRA
Mflv_1575|M.gilvum_PYR-GCK DVTLALADR--------------------------LVDMGTGFDDFTARS
MAB_1843|M.abscessus_ATCC_1997 DVTLANARG--------------------------LVDMGTGFDDFSPRS
Mvan_4724|M.vanbaalenii_PYR-1 DLTLVALPASQEPAYVPGQPLVDCAAPVNQRFPDVSVDMGTGYDCFDTLA
*:* . .****.:* * . :
MMAR_4800|M.marinum_M KAFATEGVSEAAQAGRKRLRDAMNYGGLSVYSGEWWHFDGPGAGVDRPIL
MUL_0369|M.ulcerans_Agy99 KAFATEGVSEAAQAGRKRLRDAMNYGGLSVYSGEWWHFDGPGAGVDRPIL
MAV_0853|M.avium_104 TAFNTQGISADAVANRAALRNAMNYGGLTVYSGEWWHFDGPGAGVDQPIL
Mflv_1575|M.gilvum_PYR-GCK LAYATEGVSVAAQANRARLRDAMTAGGFTVYDGEWWHFDGPGAGVDRPIP
MAB_1843|M.abscessus_ATCC_1997 LAFATEGVSPDQQANRARLRAAMQAGGLQVYSGEWWHFDGPGAGEGRPFL
Mvan_4724|M.vanbaalenii_PYR-1 HTLDPR-IQGEQLKNRLLLKEGLERHGLQNYELEWWHYTFKPETHPETYF
: .. :. .* *: .: *: *. ****: ..
MMAR_4800|M.marinum_M NAPVD------
MUL_0369|M.ulcerans_Agy99 NAPVE------
MAV_0853|M.avium_104 NVPVD------
Mflv_1575|M.gilvum_PYR-GCK EVPVT------
MAB_1843|M.abscessus_ATCC_1997 NAPVN------
Mvan_4724|M.vanbaalenii_PYR-1 DFPVAPSSLTE
: **