For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
TRRVLTGAIAALASLVMLTGCSQTVAGTAAKSGSGDVPRNDNSERKYPNLLKECEVLTEDILAETVGADP LDIQSTFVGAICRWQAANPAGLVDITRFWFETGSLDNERSVAEQLEYQIENRSVAGIQSFVMRPNDPNGA CGVASDAAGVVGWWVNPQTPGMDACGMAIKLMELTLATRA*
Operon Prediction Model: Genebank
Paralogs
species | id | gene | e-value | identity (len) | annotation |
M. vanbaalenii PYR-1 | Mvan_4438 | - | - | 100% (181) | putative lipoprotein LprC |
M. vanbaalenii PYR-1 | Mvan_1276 | - | 6e-18 | 35.33% (184) | hypothetical protein Mvan_1276 |
M. vanbaalenii PYR-1 | Mvan_4439 | - | 3e-05 | 24.16% (178) | putative lipoprotein LprB |
Closest Orthologs (e-value cutoff: 1e-4)
species | id | gene | e-value | identity (len) | annotation |
M. bovis AF2122 / 97 | Mb1306 | lprC | 5e-80 | 75.42% (179) | putative lipoprotein LPRC |
M. gilvum PYR-GCK | Mflv_2253 | - | 1e-95 | 92.27% (181) | putative lipoprotein LprC |
M. tuberculosis H37Rv | Rv1275 | lprC | 5e-80 | 75.42% (179) | lipoprotein LprC |
M. leprae Br4923 | MLBr_01116 | - | 4e-77 | 72.07% (179) | lipoprotein |
M. abscessus ATCC 19977 | MAB_1417 | - | 1e-57 | 60.22% (181) | putative lipoprotein LprC precursor |
M. marinum M | MMAR_4145 | lprC | 3e-78 | 75.57% (176) | lipoprotein LprC |
M. avium 104 | MAV_1424 | - | 5e-77 | 76.88% (173) | LprC protein |
M. smegmatis MC2 155 | MSMEG_5005 | - | 1e-79 | 77.09% (179) | LprC protein |
M. thermoresistible (build 8) | TH_1850 | lprC | 3e-84 | 79.33% (179) | POSSIBLE LIPOPROTEIN LPRC |
M. ulcerans Agy99 | MUL_4008 | lprC | 5e-77 | 75.00% (176) | lipoprotein LprC |
CLUSTAL 2.0.9 multiple sequence alignment Mvan_4438|M.vanbaalenii_PYR-1 ---MT--------RRVLTGAIAALASLVMLTGCSQTVAGTAAKSGSGDVP Mflv_2253|M.gilvum_PYR-GCK ---MT--------PRLLRGAIAAMAGLVVLTGCTQTVEGTAAKSGTGNVP TH_1850|M.thermoresistible__bu ---MSRHPAPLPPRRILVALLTLLAAVTVVAGCTRTVEGTAARAGSGSVE MSMEG_5005|M.smegmatis_MC2_155 ---MSR---PTTLRRSVAALATGLAVLAGVTGCSRTIEGTAAKEGSGGGP MMAR_4145|M.marinum_M MSGGMRRGSRRGNDAGLRAAAVLLAVLVSITGCSRSISGNAIKAGGGGVP MUL_4008|M.ulcerans_Agy99 MSGGMRRGSRRGNGAGLRAAAVLLAVLVSTTGCSRSISGNAIKAGGGGVP Mb1306|M.bovis_AF2122/97 -MRRVLVG-----------AAALITALLVLTGCTKSISGTAVKAGGAGVP Rv1275|M.tuberculosis_H37Rv -MRRVLVG-----------AAALITALLVLTGCTKSISGTAVKAGGAGVP MLBr_01116|M.leprae_Br4923 -MRLSVRG-RRS---VFAGVAVLVSAALVVTGCSRSIGGTAVKAGSHDVP MAV_1424|M.avium_104 MMAMMRPGPRRST--ARAAATVLFLALLVLTGCSRSIAGNAVKAGG-NVP MAB_1417|M.abscessus_ATCC_1997 --MMHRKT------KSLFAAACVALVAFGSAGCGGTVDGEAVMPGKGDSA :** :: * * * . Mvan_4438|M.vanbaalenii_PYR-1 RNDNSERKYPNLLKECEVLTEDILAETVGADPLDIQSTFVGAICRWQAAN Mflv_2253|M.gilvum_PYR-GCK RNDNSERKYPNLLKECEVLTEDILAETVGADPLDIQSTFVGAICRWQAAN TH_1850|M.thermoresistible__bu RNDDSERRYPNLLKECEVLTEDILAETVGADPLDIQATFIGAVCRWQAAN MSMEG_5005|M.smegmatis_MC2_155 SNNNSERQYPNLLKECEVLTEDILAETVGADPLDIQSTFVGAVCRWQAAN MMAR_4145|M.marinum_M RNNNSEQQYPNLLKECEVLTTDILAKTVGADPLDIQSTFVGAICRWQAAN MUL_4008|M.ulcerans_Agy99 RNNNSEQQYPSLLKECEVLTTDILAKTVGADPLDIQSTFVGAICRWQAAN Mb1306|M.bovis_AF2122/97 RNNNSQERYPNLLKECEVLTTDILAKTVGADPLDIQSTFVGAICRWQAAN Rv1275|M.tuberculosis_H37Rv RNNNSQERYPNLLKECEVLTTDILAKTVGADPLDIQSTFVGAICRWQAAN MLBr_01116|M.leprae_Br4923 RNNNSQQQYPNLLKECEVLTTDILAKTVGADSLDIQSTFVGAICRWQAAN MAV_1424|M.avium_104 RNNNSQQQYPNLLKECEVLTSDILAKTVGADPLDIQSTFVGAICRWQAAN MAB_1417|M.abscessus_ATCC_1997 EGPNAEQKYPNLLKECEVLTTDVLAKAVDADPRDIQSTFVGALCRWQAMS . :::.:**.********* *:**::*.**. ***:**:**:***** . Mvan_4438|M.vanbaalenii_PYR-1 PAG-LVDITRFWFETGSLDNERSVAEQLEYQIENRSVAGIQSFVMRPNDP Mflv_2253|M.gilvum_PYR-GCK PAG-LVDITRFWFETGSLDNERSVAEQLEYQLEERNVAGIQSIVMRPNDP TH_1850|M.thermoresistible__bu PNG-LVDITRFWFEQGDLANERQVAERLGYQIENRNIAGIESFVMRPNDP MSMEG_5005|M.smegmatis_MC2_155 PAG-LVDITRFWYEQGSLDNERQVAQQLQYAIESRRIAGVDSIVMKPNGL MMAR_4145|M.marinum_M PAG-LIDITRYWFEQGSLSNERKVAEGLKYQVESRTIQGVDSIVMRPNDP MUL_4008|M.ulcerans_Agy99 PAG-LIDITRYWFEQGSLSNERKVAEGLKYQVESRTIQGVDSIVMRPNDP Mb1306|M.bovis_AF2122/97 PAG-LIDITRFWFEQGSLSNERKVAEGLKYQVETRAIQGVDSIVMRTGDP Rv1275|M.tuberculosis_H37Rv PAG-LIDITRFWFEQGSLSNERKVAEGLKYQVETRAIQGVDSIVMRTGDP MLBr_01116|M.leprae_Br4923 PAS-LIDITRFWFEQGSLANERKVADFLKYKVENRSIAGVDSIVMRPDDP MAV_1424|M.avium_104 PAG-LIDITRFWFEQGSLSNERKVAEFLKYKIETRNIAGIDSIVMRPDDP MAB_1417|M.abscessus_ATCC_1997 KSGGLVDITRFWFETGSLEAEKATANSLKYNVQERAIQGIPSIVMKPPDQ . *:****:*:* *.* *: .*: * * :: * : *: *:**:. . Mvan_4438|M.vanbaalenii_PYR-1 NGACGVASDAAGVVGWWVNPQTPGMDACGMAIKLMELTLATRA Mflv_2253|M.gilvum_PYR-GCK NGACGVASDAAGVVGWWVNPQTPGMDACGMAIKLMELTLATRA TH_1850|M.thermoresistible__bu NGSCGVASDAAGVVGWWVNPQAPGMDACGMAIKLMELTLATRA MSMEG_5005|M.smegmatis_MC2_155 NGACGVASDAAGVVGWWVNPQAPGLDACGMAIKLMELTLATNS MMAR_4145|M.marinum_M NGACGVASDAAGVVGWWVNPQAPGIDACSQAIKLMELTLATNS MUL_4008|M.ulcerans_Agy99 NGACGVASDAAGVVGWWVNPQAPGIDACLQAIKLMELTLATNS Mb1306|M.bovis_AF2122/97 NGACGVASDAAGVVGWWVNPQAPGIDACGQAIKLMELTLATNA Rv1275|M.tuberculosis_H37Rv NGACGVASDAAGVVGWWVNPQAPGIDACGQAIKLMELTLATNA MLBr_01116|M.leprae_Br4923 NGACGVASDAAGVVGWWINPQASGIDACGQAIKLMELTLATNS MAV_1424|M.avium_104 NGACGVASDAAGVVGWWVNPQAPGIDACGQAIKLMELTLATNS MAB_1417|M.abscessus_ATCC_1997 PGACGVASDAAGVVGWWVNPQGRGGDSCTQAIKLMEMTLSVNI *:**************:*** * *:* ******:**:..