For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
MTPRLLRGAIAAMAGLVVLTGCTQTVEGTAAKSGTGNVPRNDNSERKYPNLLKECEVLTEDILAETVGAD PLDIQSTFVGAICRWQAANPAGLVDITRFWFETGSLDNERSVAEQLEYQLEERNVAGIQSIVMRPNDPNG ACGVASDAAGVVGWWVNPQTPGMDACGMAIKLMELTLATRA
Operon Prediction Model: Genebank
Paralogs
species | id | gene | e-value | identity (len) | annotation |
M. gilvum PYR-GCK | Mflv_2253 | - | - | 100% (181) | putative lipoprotein LprC |
M. gilvum PYR-GCK | Mflv_5081 | - | 3e-14 | 28.57% (175) | hypothetical protein Mflv_5081 |
Closest Orthologs (e-value cutoff: 1e-4)
species | id | gene | e-value | identity (len) | annotation |
M. bovis AF2122 / 97 | Mb1306 | lprC | 7e-79 | 76.40% (178) | putative lipoprotein LPRC |
M. tuberculosis H37Rv | Rv1275 | lprC | 7e-79 | 76.40% (178) | lipoprotein LprC |
M. leprae Br4923 | MLBr_01116 | - | 4e-74 | 71.26% (174) | lipoprotein |
M. abscessus ATCC 19977 | MAB_1417 | - | 2e-57 | 63.16% (171) | putative lipoprotein LprC precursor |
M. marinum M | MMAR_4145 | lprC | 7e-78 | 75.57% (176) | lipoprotein LprC |
M. avium 104 | MAV_1424 | - | 1e-77 | 77.46% (173) | LprC protein |
M. smegmatis MC2 155 | MSMEG_5005 | - | 9e-81 | 77.60% (183) | LprC protein |
M. thermoresistible (build 8) | TH_1850 | lprC | 5e-83 | 78.65% (178) | POSSIBLE LIPOPROTEIN LPRC |
M. ulcerans Agy99 | MUL_4008 | lprC | 1e-76 | 75.00% (176) | lipoprotein LprC |
M. vanbaalenii PYR-1 | Mvan_4438 | - | 1e-95 | 92.27% (181) | putative lipoprotein LprC |
CLUSTAL 2.0.9 multiple sequence alignment Mflv_2253|M.gilvum_PYR-GCK ---MT--------PRLLRGAIAAMAGLVVLTGCTQTVEGTAAKSGTGNVP Mvan_4438|M.vanbaalenii_PYR-1 ---MT--------RRVLTGAIAALASLVMLTGCSQTVAGTAAKSGSGDVP TH_1850|M.thermoresistible__bu ---MSRHPAPLPPRRILVALLTLLAAVTVVAGCTRTVEGTAARAGSGSVE MSMEG_5005|M.smegmatis_MC2_155 ---MSR---PTTLRRSVAALATGLAVLAGVTGCSRTIEGTAAKEGSGGGP MMAR_4145|M.marinum_M MSGGMRRGSRRGNDAGLRAAAVLLAVLVSITGCSRSISGNAIKAGGGGVP MUL_4008|M.ulcerans_Agy99 MSGGMRRGSRRGNGAGLRAAAVLLAVLVSTTGCSRSISGNAIKAGGGGVP Mb1306|M.bovis_AF2122/97 -MRRVLVG-----------AAALITALLVLTGCTKSISGTAVKAGGAGVP Rv1275|M.tuberculosis_H37Rv -MRRVLVG-----------AAALITALLVLTGCTKSISGTAVKAGGAGVP MLBr_01116|M.leprae_Br4923 -MRLSVRG-RRS---VFAGVAVLVSAALVVTGCSRSIGGTAVKAGSHDVP MAV_1424|M.avium_104 MMAMMRPGPRRST--ARAAATVLFLALLVLTGCSRSIAGNAVKAGG-NVP MAB_1417|M.abscessus_ATCC_1997 --MMHRKT------KSLFAAACVALVAFGSAGCGGTVDGEAVMPGKGDSA :** :: * * * . Mflv_2253|M.gilvum_PYR-GCK RNDNSERKYPNLLKECEVLTEDILAETVGADPLDIQSTFVGAICRWQAAN Mvan_4438|M.vanbaalenii_PYR-1 RNDNSERKYPNLLKECEVLTEDILAETVGADPLDIQSTFVGAICRWQAAN TH_1850|M.thermoresistible__bu RNDDSERRYPNLLKECEVLTEDILAETVGADPLDIQATFIGAVCRWQAAN MSMEG_5005|M.smegmatis_MC2_155 SNNNSERQYPNLLKECEVLTEDILAETVGADPLDIQSTFVGAVCRWQAAN MMAR_4145|M.marinum_M RNNNSEQQYPNLLKECEVLTTDILAKTVGADPLDIQSTFVGAICRWQAAN MUL_4008|M.ulcerans_Agy99 RNNNSEQQYPSLLKECEVLTTDILAKTVGADPLDIQSTFVGAICRWQAAN Mb1306|M.bovis_AF2122/97 RNNNSQERYPNLLKECEVLTTDILAKTVGADPLDIQSTFVGAICRWQAAN Rv1275|M.tuberculosis_H37Rv RNNNSQERYPNLLKECEVLTTDILAKTVGADPLDIQSTFVGAICRWQAAN MLBr_01116|M.leprae_Br4923 RNNNSQQQYPNLLKECEVLTTDILAKTVGADSLDIQSTFVGAICRWQAAN MAV_1424|M.avium_104 RNNNSQQQYPNLLKECEVLTSDILAKTVGADPLDIQSTFVGAICRWQAAN MAB_1417|M.abscessus_ATCC_1997 EGPNAEQKYPNLLKECEVLTTDVLAKAVDADPRDIQSTFVGALCRWQAMS . :::.:**.********* *:**::*.**. ***:**:**:***** . Mflv_2253|M.gilvum_PYR-GCK PAG-LVDITRFWFETGSLDNERSVAEQLEYQLEERNVAGIQSIVMRPNDP Mvan_4438|M.vanbaalenii_PYR-1 PAG-LVDITRFWFETGSLDNERSVAEQLEYQIENRSVAGIQSFVMRPNDP TH_1850|M.thermoresistible__bu PNG-LVDITRFWFEQGDLANERQVAERLGYQIENRNIAGIESFVMRPNDP MSMEG_5005|M.smegmatis_MC2_155 PAG-LVDITRFWYEQGSLDNERQVAQQLQYAIESRRIAGVDSIVMKPNGL MMAR_4145|M.marinum_M PAG-LIDITRYWFEQGSLSNERKVAEGLKYQVESRTIQGVDSIVMRPNDP MUL_4008|M.ulcerans_Agy99 PAG-LIDITRYWFEQGSLSNERKVAEGLKYQVESRTIQGVDSIVMRPNDP Mb1306|M.bovis_AF2122/97 PAG-LIDITRFWFEQGSLSNERKVAEGLKYQVETRAIQGVDSIVMRTGDP Rv1275|M.tuberculosis_H37Rv PAG-LIDITRFWFEQGSLSNERKVAEGLKYQVETRAIQGVDSIVMRTGDP MLBr_01116|M.leprae_Br4923 PAS-LIDITRFWFEQGSLANERKVADFLKYKVENRSIAGVDSIVMRPDDP MAV_1424|M.avium_104 PAG-LIDITRFWFEQGSLSNERKVAEFLKYKIETRNIAGIDSIVMRPDDP MAB_1417|M.abscessus_ATCC_1997 KSGGLVDITRFWFETGSLEAEKATANSLKYNVQERAIQGIPSIVMKPPDQ . *:****:*:* *.* *: .*: * * :: * : *: *:**:. . Mflv_2253|M.gilvum_PYR-GCK NGACGVASDAAGVVGWWVNPQTPGMDACGMAIKLMELTLATRA Mvan_4438|M.vanbaalenii_PYR-1 NGACGVASDAAGVVGWWVNPQTPGMDACGMAIKLMELTLATRA TH_1850|M.thermoresistible__bu NGSCGVASDAAGVVGWWVNPQAPGMDACGMAIKLMELTLATRA MSMEG_5005|M.smegmatis_MC2_155 NGACGVASDAAGVVGWWVNPQAPGLDACGMAIKLMELTLATNS MMAR_4145|M.marinum_M NGACGVASDAAGVVGWWVNPQAPGIDACSQAIKLMELTLATNS MUL_4008|M.ulcerans_Agy99 NGACGVASDAAGVVGWWVNPQAPGIDACLQAIKLMELTLATNS Mb1306|M.bovis_AF2122/97 NGACGVASDAAGVVGWWVNPQAPGIDACGQAIKLMELTLATNA Rv1275|M.tuberculosis_H37Rv NGACGVASDAAGVVGWWVNPQAPGIDACGQAIKLMELTLATNA MLBr_01116|M.leprae_Br4923 NGACGVASDAAGVVGWWINPQASGIDACGQAIKLMELTLATNS MAV_1424|M.avium_104 NGACGVASDAAGVVGWWVNPQAPGIDACGQAIKLMELTLATNS MAB_1417|M.abscessus_ATCC_1997 PGACGVASDAAGVVGWWVNPQGRGGDSCTQAIKLMEMTLSVNI *:**************:*** * *:* ******:**:..