For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
VGGGHSHPLYRDGDSPVHRAPAEVKIVCLTVFVLAVVATPRELFWPFGLYGLIILAVWRVARIPLAWILP RMLIEAPFIVLALLLPFAEGGERVVVAGMHLSVTGLYAAWGIVVKGTLGVAASLTVAATTTARELPVALS RLRVPAVIVSVLTLMIRYIDVLSAEARRMRVARISRGDSPRMLHQIGATATSVGSLFLRSYERGERVYLA MLSRGFDGHVPALAVGAGCAAPATPRQWTVALLPAAAAVAVAVCALVLS
Operon Prediction Model: Genebank
Paralogs
species | id | gene | e-value | identity (len) | annotation |
M. vanbaalenii PYR-1 | Mvan_2293 | - | - | 100% (259) | cobalt ABC transporter, inner membrane subunit CbiQ |
M. vanbaalenii PYR-1 | Mvan_3805 | - | 2e-08 | 24.81% (266) | cobalt transport protein |
Closest Orthologs (e-value cutoff: 1e-4)
species | id | gene | e-value | identity (len) | annotation |
M. bovis AF2122 / 97 | Mb2352c | - | 1e-07 | 25.75% (268) | hypothetical protein Mb2352c |
M. gilvum PYR-GCK | Mflv_4056 | - | 1e-127 | 88.24% (255) | cobalt ABC transporter, inner membrane subunit CbiQ |
M. tuberculosis H37Rv | Rv2325c | - | 2e-07 | 25.75% (268) | hypothetical protein Rv2325c |
M. leprae Br4923 | - | - | - | - | - |
M. abscessus ATCC 19977 | MAB_3145 | - | 4e-06 | 23.75% (261) | hypothetical protein MAB_3145 |
M. marinum M | - | - | - | - | - |
M. avium 104 | MAV_2083 | - | 2e-07 | 24.24% (264) | cobalt transport protein |
M. smegmatis MC2 155 | MSMEG_2609 | cbiQ | 1e-111 | 77.25% (255) | cobalt ABC transporter, permease protein CbiQ |
M. thermoresistible (build 8) | TH_3631 | - | 3e-06 | 31.49% (181) | PUTATIVE cobalt transport protein |
M. ulcerans Agy99 | - | - | - | - | - |
CLUSTAL 2.0.9 multiple sequence alignment Mb2352c|M.bovis_AF2122/97 MTTTS--APARNGTRRPSRPIVLLIPVPGSSVIHDLWAGTKLLVVFG--I Rv2325c|M.tuberculosis_H37Rv MTTTS--APARNGTRRPSRPIVLLIPVPGSSVIHDLWAGTKLLVVFG--I MAV_2083|M.avium_104 MTAPSDTKSAAGRTRRPPRPVVLLVPVPGTSKIHELWAGTKLLVVLG--V MAB_3145|M.abscessus_ATCC_1997 MSQR--------------RPLMLMRPVPGPSPIHALWAGTKLLAVLA--I TH_3631|M.thermoresistible__bu MSTFG-------------------QYQPGSSPLHRLPAGVKLVALAVS-I Mvan_2293|M.vanbaalenii_PYR-1 MGGGH----------------SHPLYRDGDSPVHRAPAEVKIVCLTVFVL Mflv_4056|M.gilvum_PYR-GCK MGGGH----------------SHPLYRDGDSPVHRLPAEVKIVCLAAFVL MSMEG_2609|M.smegmatis_MC2_155 MAGGH----------------AHPLYRQGDSALHRLAPEVKIVCLVVFVV * * * :* . .*:: : : Mb2352c|M.bovis_AF2122/97 SVLLTFYPGWVTIGMMAALVLAAARIAHIPRGALPSVPRWLWIVLAIGFL Rv2325c|M.tuberculosis_H37Rv SVLLTFYPGWVTIGMMAALVLAAARIAHIPRGALPSVPRWLWIVLAIGFL MAV_2083|M.avium_104 SVLLTFFPGWVTVGLMLALLVAAARLAHIPRGALPSPRRWIWIVLAVGGI MAB_3145|M.abscessus_ATCC_1997 SVLLTITPSWPAIGLVALLILVTAGLAGISPRCIPSVPRWVWLLVVAGSL TH_3631|M.thermoresistible__bu ALMAVWVQTPADLAVAALGVAALVAAAGLRPRALTAQLRPVLWVVAV--- Mvan_2293|M.vanbaalenii_PYR-1 AVVATPRELFWPFGLYGLIILAVWRVARIPLAWILPRMLIEAPFIVLALL Mflv_4056|M.gilvum_PYR-GCK AVVATPRELFWPFGVYALIILAVWRAARIPLRWILPRMLIEAPFLVLAVL MSMEG_2609|M.smegmatis_MC2_155 AVVATPRETFWPFGVYALIIVSMWAVAKIPPAWVLPRMLIEAPFLILAVL ::: . ..: : * : : . .: Mb2352c|M.bovis_AF2122/97 TAALAGGTPVVAVGGVQLGLGGALHFLRITALSVVLLALGAMVSWTTNVA Rv2325c|M.tuberculosis_H37Rv TAALAGGTPVVAVGGVQLGLGGALHFLRITALSVVLLALGAMVSWTTNVA MAV_2083|M.avium_104 TAALGAGSPVVSIAGLHIGLGGTLHFLRVTALSIVLIGLGAMLSWTTNVA MAB_3145|M.abscessus_ATCC_1997 FTIVNGGAPELKLGPATIGVGGFLDFLRVTSLGLVLIGLGAVISWTTQVA TH_3631|M.thermoresistible__bu ------------IFGFQLLFTDWRRALVVCGILLLSVVLAAVVTVTTRVT Mvan_2293|M.vanbaalenii_PYR-1 LPFAEGGER-VVVAGMHLSVTGLYAAWGIVVKGTLGVAASLTVAATTTAR Mflv_4056|M.gilvum_PYR-GCK LPFSEGGER-VSLAGMHLSIAGLYAAWGIVIKGTLGVAASLTVAATTTSR MSMEG_2609|M.smegmatis_MC2_155 LPFAEGGER-VEFAGLQLSVTGLYAAWGIVVKGTLGVAASLTVAATTTAR . : . . : : : . :: ** Mb2352c|M.bovis_AF2122/97 EISPAVATLGRPFRVLRIPVDEWAVALALALRAFPMLIDEFQVLYAARRL Rv2325c|M.tuberculosis_H37Rv EISPAVATLGRPFRVLRIPVDEWAVALALALRAFPMLIDEFQVLYAARRL MAV_2083|M.avium_104 EMGPALATLGRPLRWLRIPSDEWAVALALALRAFPMLIEEFQVLYAARRL MAB_3145|M.abscessus_ATCC_1997 DIAPAVALLCRPLRVLRVPVDDWAVTISLAFRMFPMLSEEFRLLAAARRL TH_3631|M.thermoresistible__bu AMLAALTALMRPLGRVGFPVDQLALALALTLRTIPLMIDTVRQVEEARRA Mvan_2293|M.vanbaalenii_PYR-1 ELPVALSRLRVPAVIVSV--------LTLMIRYIDVLSAEARRMRVARIS Mflv_4056|M.gilvum_PYR-GCK ELPVALSRLRVPAMIVSV--------LTLMIRYIDVLAAEARRMRMARVS MSMEG_2609|M.smegmatis_MC2_155 ELPLALSRLGVPGTVISM--------LTLMIRYIDVLSTEANRMRMARIS : *:: * * : . ::* :* : :: . : ** Mb2352c|M.bovis_AF2122/97 RPKRMPPSRKARRQRHARELIDLLAAAITVTLRRADEMGDAITARGGTGQ Rv2325c|M.tuberculosis_H37Rv RPKRMPPSRKARRQRHARELIDLLAAAITVTLRRADEMGDAITARGGTGQ MAV_2083|M.avium_104 RPNQTPRSRRARRRQQARDMIDLLTAAIVVTLRRADEMGDAITARGGIGQ MAB_3145|M.abscessus_ATCC_1997 QP---PAPEKPSRR---AEVVDLCTAAMVVSLRRATEMGDAITARGGAGR TH_3631|M.thermoresistible__bu RGLRFSPRI-------------VLAPVITAALDTADGFAEALTARGLD-- Mvan_2293|M.vanbaalenii_PYR-1 RGDSPRMLHQIG------ATATSVGSLFLRSYERGERVYLAMLSRGFDGH Mflv_4056|M.gilvum_PYR-GCK RGDSPRMFHQIG------ATARGVGSLFLRSYERGERVYLAMLSRGFDGH MSMEG_2609|M.smegmatis_MC2_155 RGDSPRGLHQAG------AIAKSVGALFLRSYERGERVYLAMLSRGYEGR : . : : . . *: :** Mb2352c|M.bovis_AF2122/97 LSAHPGRPKLADWVT-----LAITAMASGTAVAIESLILHS Rv2325c|M.tuberculosis_H37Rv LSAHPGRPKLADWVT-----LAITAMASGTAVAIESLILHS MAV_2083|M.avium_104 LSAAPARPKLADWVT-----LAITVAAGAIGVALDSMIPFQ MAB_3145|M.abscessus_ATCC_1997 ISAHTVYPGWRDAIA-----AAVLVGVVTLAVVLG------ TH_3631|M.thermoresistible__bu ----------------------------------------- Mvan_2293|M.vanbaalenii_PYR-1 VPALAVGAGCAAPATPRQWTVALLPAAAAVAVAVCALVLS- Mflv_4056|M.gilvum_PYR-GCK VPALAVGAGSVAAATPRQWVMALLPAAAAVAVAASAWATL- MSMEG_2609|M.smegmatis_MC2_155 IPELAVGAGSAAAATPRQWLVAAVPVSAAVLVAATAWGLR-