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M. vanbaalenii PYR-1 Mvan_1306 (rplD)

annotation: 50S ribosomal protein L4
coordinates: 1400226 - 1400885
length: 219

MTSEDRKIPVRTPAGKTDGSIELPAELFDVEPNIALMHQVVNAQLAAKRQGTHSTKTRGEVSGGGKKPYR
QKGTGRARQGSTRAPQFTGGGIVHGPKPRDYSERTPKKMIRAALRGALSDRARNDRIHAITEIVEGQTPS
TKSAKSFLATLTDRRQVLVVIGRADEASALSVRNLPGVHVISPDQLNTYDVLKADDVVFSVEALNAYIAA
NTKTEEVSA
Operon Prediction Model: Genebank

Paralogs
speciesidgenee-valueidentity (len)annotation
M. vanbaalenii PYR-1Mvan_1306rplD-100% (219)50S ribosomal protein L4

Closest Orthologs (e-value cutoff: 1e-4)
speciesidgenee-valueidentity (len)annotation
M. bovis AF2122 / 97Mb0722rplD1e-10285.98% (214) 50S ribosomal protein L4
M. gilvum PYR-GCKMflv_5048rplD1e-10487.96% (216) 50S ribosomal protein L4
M. tuberculosis H37RvRv0702rplD1e-10285.98% (214) 50S ribosomal protein L4
M. leprae Br4923MLBr_01862rplD2e-9679.28% (222) 50S ribosomal protein L4
M. abscessus ATCC 19977MAB_3819crplD3e-9481.69% (213) 50S ribosomal protein L4
M. marinum MMMAR_1032rplD1e-10082.87% (216) 50S ribosomal protein L4, RplD
M. avium 104MAV_4470rplD1e-10083.64% (214) 50S ribosomal protein L4
M. smegmatis MC2 155MSMEG_1437rplD1e-10488.89% (207) 50S ribosomal protein L4
M. thermoresistible (build 8)TH_0406rplD2e-9982.65% (219) PROBABLE 50S RIBOSOMAL PROTEIN L4 RPLD
M. ulcerans Agy99MUL_0791rplD4e-9981.94% (216) 50S ribosomal protein L4

CLUSTAL 2.0.9 multiple sequence alignment


MMAR_1032|M.marinum_M               MAAQNQSAQKDLEIQVKTPDGKVDGSVALPAELFDVPANIALMHQVVTAQ
MUL_0791|M.ulcerans_Agy99           MAAQNQSAQKDLEIQVKAPDGKVDGSVVLPAELFDVPANIALMHQVVTAQ
MAB_3819c|M.abscessus_ATCC_199      -----------MKIAVKAPGGKTDGSIELPAELFDAPANIALLHQVVTAQ
MLBr_01862|M.leprae_Br4923          MAAKVENGSNIRKIDVKTPDGKVDGTIELPAELFDAPANIALMHQVVTAQ
Mb0722|M.bovis_AF2122/97            MAAQEQ---KTLKIDVKTPAGKVDGAIELPAELFDVPANIALMHQVVTAQ
Rv0702|M.tuberculosis_H37Rv         MAAQEQ---KTLKIDVKTPAGKVDGAIELPAELFDVPANIALMHQVVTAQ
MAV_4470|M.avium_104                ---------MALKLDVKAPGGKVEGSIELPAELFDAPANIALMHQVVTAQ
Mvan_1306|M.vanbaalenii_PYR-1       ------MTSEDRKIPVRTPAGKTDGSIELPAELFDVEPNIALMHQVVNAQ
Mflv_5048|M.gilvum_PYR-GCK          ------MAN--KTIDVVTPAGKKDGTVELPAALFDAEPNIALMHQVVTAQ
MSMEG_1437|M.smegmatis_MC2_155      ---------MTLKVDVKTPAGKTDGSVELPAELFDVEPNIALMHQVVTAQ
TH_0406|M.thermoresistible__bu      -----------MKIDVRTPAGKTEGSVELPAELFDVEPNIALMHQVVTAQ
                                                 : * :* ** :*:: *** ***. .****:****.**

MMAR_1032|M.marinum_M               RAAARQGTHSTKTRGDVSGGGRKPYRQKGTGRARQGSTRAPQFTGGGVVH
MUL_0791|M.ulcerans_Agy99           RAAARQGTHSTKTRGDVSGGGRKPYRQKGTGRARQGSTRTPQFTGGGVVH
MAB_3819c|M.abscessus_ATCC_199      LAAGRQGTHSTKTRGLVSGGGKKPYRQKGTGRARQGSTRAPQFTGGGIVH
MLBr_01862|M.leprae_Br4923          RAAARQGTHSTKTRGDVSGGGRKPYRQKGTGRARQGSMRAPQFTGGGIVH
Mb0722|M.bovis_AF2122/97            RAAARQGTHSTKTRGEVSGGGRKPYRQKGTGRARQGSTRAPQFTGGGVVH
Rv0702|M.tuberculosis_H37Rv         RAAARQGTHSTKTRGEVSGGGRKPYRQKGTGRARQGSTRAPQFTGGGVVH
MAV_4470|M.avium_104                RAAARQGTHSTKTRGDVSGGGRKPYRQKGTGRARQGSTRAPQFTGGGVVH
Mvan_1306|M.vanbaalenii_PYR-1       LAAKRQGTHSTKTRGEVSGGGKKPYRQKGTGRARQGSTRAPQFTGGGIVH
Mflv_5048|M.gilvum_PYR-GCK          LAAKRQGTHATKTRAMVSGGGKKPYRQKGTGRARQGSTRAPQFTGGGVVH
MSMEG_1437|M.smegmatis_MC2_155      LAAKRQGTHSTKTRGEVSGGGKKPYRQKGTGRARQGSTRAPQFTGGGTVH
TH_0406|M.thermoresistible__bu      LAAARQGTHSTKTRGEVRGGGRKPWRQKGTGRARQGSLRAPQFTGGGVVH
                                     ** *****:****. * ***:**:************ *:******* **

MMAR_1032|M.marinum_M               GPKPRDYSQRTPKKMIAAALRGALSDRARNGRIHAVTELVAGQTPSTKSA
MUL_0791|M.ulcerans_Agy99           GPKPRDYSQRTPKKMIAAALRGALSDRARNGRIHAVTELVAGQTPSTKSA
MAB_3819c|M.abscessus_ATCC_199      GPQPRDYSQRTPKKMIAAALRGALSDRARNGRIHAVTELVAGQEPSTKSA
MLBr_01862|M.leprae_Br4923          GPKLRDYSQRTPKKMIAAALRGALSDRARNGRIHAVTELVVGKTPSTKSA
Mb0722|M.bovis_AF2122/97            GPKPRDYSQRTPKKMIAAALRGALSDRARNGRIHAITELVEGQNPSTKSA
Rv0702|M.tuberculosis_H37Rv         GPKPRDYSQRTPKKMIAAALRGALSDRARNGRIHAITELVEGQNPSTKSA
MAV_4470|M.avium_104                GPKPRDYSQRTPKKMIAAALRGALSDRARNGRIHAITELVSGQTPSTKSA
Mvan_1306|M.vanbaalenii_PYR-1       GPKPRDYSERTPKKMIRAALRGALSDRARNDRIHAITEIVEGQTPSTKSA
Mflv_5048|M.gilvum_PYR-GCK          GPQPRDYSQRTPKKMIAAALRSALSDRARNDRIHAITEVVEGQSPSTKSA
MSMEG_1437|M.smegmatis_MC2_155      GPKPRDYSQRTPKKMIAAALRGALSDRARNDRIHAVTELVEGQTPSTKSA
TH_0406|M.thermoresistible__bu      GPKPRDYSQRTPKKMIAAALRGALSDRARNGRIHAVTELVEGQTPSTKKA
                                    **: ****:******* ****.********.****:**:* *: ****.*

MMAR_1032|M.marinum_M               KTFLATITDRK-----QVLVVIGRDDQTGVKSVRNLPGVHILSPDQLNTY
MUL_0791|M.ulcerans_Agy99           KTFLATITDRK-----QVLVVIGRDDQTGVKSVRNLPGVHILSPDQLNTY
MAB_3819c|M.abscessus_ATCC_199      KSFLGEITDRK-----QLLVVLGRDDLASVKSVRNLPNVHVLAYDQLNTY
MLBr_01862|M.leprae_Br4923          KEFLGTLTDRK-----QVLVVIGRSDETGAKSVRNLPGVHLLSPDQLNTY
Mb0722|M.bovis_AF2122/97            RAFLASLTERK-----QVLVVIGRSDEAGAKSVRNLPGVHILAPDQLNTY
Rv0702|M.tuberculosis_H37Rv         RAFLASLTERK-----QVLVVIGRSDEAGAKSVRNLPGVHILAPDQLNTY
MAV_4470|M.avium_104                KAFLGTLTERK-----QVLVVIGRSDEAGAKSVRNLPGVHILAPDQLNTY
Mvan_1306|M.vanbaalenii_PYR-1       KSFLATLTDRR-----QVLVVIGRADEASALSVRNLPGVHVISPDQLNTY
Mflv_5048|M.gilvum_PYR-GCK          KAFLATLTDRK-----QVLVVIGRADETSALSVRNLPGVHVISPDQLNTY
MSMEG_1437|M.smegmatis_MC2_155      KTFLGTLTENK-----KVLVVIGRTDEVGAKSVRNLPGVHVISPDQLNTY
TH_0406|M.thermoresistible__bu      KAFLSTVIADRTVEKDKVLVVIGRTDETSIRSVRNLPGVHVIAPDQLNTY
                                    : **. :   :     ::***:** * ..  ******.**::: ******

MMAR_1032|M.marinum_M               DVLRADDVVFSVEALNAYIAAN------TSEEVSA
MUL_0791|M.ulcerans_Agy99           DVLRADDVVFSVEALNAYIAAN------TSEEVSA
MAB_3819c|M.abscessus_ATCC_199      DVLKADDVVFSVEALNGFINAK------KKEEVSA
MLBr_01862|M.leprae_Br4923          DVLRADDLVFSVEALNSYIAAQQAAGTSTPEKVSA
Mb0722|M.bovis_AF2122/97            DVLRADDVVFSVEALNAYIAAN----TTTSEEVSA
Rv0702|M.tuberculosis_H37Rv         DVLRADDVVFSVEALNAYIAAN----TTTSEEVSA
MAV_4470|M.avium_104                DVLRADDVVFSVEALRAYIAAN----TGTPEEVSA
Mvan_1306|M.vanbaalenii_PYR-1       DVLKADDVVFSVEALNAYIAAN----TKT-EEVSA
Mflv_5048|M.gilvum_PYR-GCK          DVLKADDVVFSVEALNAYIAAA----TKTTEEVSA
MSMEG_1437|M.smegmatis_MC2_155      DVLNADDVVFSVEALNAYISAN----SKEGASV--
TH_0406|M.thermoresistible__bu      DVLKADDVVFSVEALNAYISAN----TSTAKEVSA
                                    ***.***:*******..:* *          .*