For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
VTTLIDSNPDGAVASQSEISAEIGAIESAYQRAGVEETQPRLSYPPYRSSLLRHPTKDLHHADPEGVELW TPCFSERDVHPLEADLTVQHSGEPIGERLVVTGRVVDGAGRPVRRQLVEIWQANAGGRYIHKRDQHPSPI DPNFTGAGRCLTDEDGIYRFTTIKPGPYPWKNHRNAWRPAHIHFSFFGTEFTQRMVTQMYFPGDPLLCLD PIFQAIPDQKARSRLVASYDHELSTHEWATGYRWDVVLTGSARTPIENLGRGAHR
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. vanbaalenii PYR-1 | Mvan_0560 | - | - | 100% (265) | protocatechuate 3,4-dioxygenase, beta subunit |
| M. vanbaalenii PYR-1 | Mvan_4404 | - | 2e-10 | 32.59% (135) | intradiol ring-cleavage dioxygenase |
| M. vanbaalenii PYR-1 | Mvan_0561 | - | 2e-09 | 32.03% (153) | protocatechuate 3,4-dioxygenase, alpha subunit |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | - | - | - | - | - |
| M. gilvum PYR-GCK | Mflv_0530 | - | 1e-159 | 99.25% (265) | protocatechuate 3,4-dioxygenase, beta subunit |
| M. tuberculosis H37Rv | - | - | - | - | - |
| M. leprae Br4923 | - | - | - | - | - |
| M. abscessus ATCC 19977 | - | - | - | - | - |
| M. marinum M | - | - | - | - | - |
| M. avium 104 | MAV_3506 | pcaH | 2e-99 | 67.49% (243) | protocatechuate 3,4-dioxygenase, beta subunit |
| M. smegmatis MC2 155 | MSMEG_2601 | pcaH | 1e-117 | 75.20% (246) | protocatechuate 3,4-dioxygenase, beta subunit |
| M. thermoresistible (build 8) | - | - | - | - | - |
| M. ulcerans Agy99 | - | - | - | - | - |
CLUSTAL 2.0.9 multiple sequence alignment
Mvan_0560|M.vanbaalenii_PYR-1 --------------------------------------------------
Mflv_0530|M.gilvum_PYR-GCK MPLVEGAENVQQTRGDSGSRRRSVPCQLWMAFPLSGILPFASLNVVGTVG
MSMEG_2601|M.smegmatis_MC2_155 --------------------------------------------------
MAV_3506|M.avium_104 --------------------------------------------------
Mvan_0560|M.vanbaalenii_PYR-1 -MTTLIDSNPDGAVASQSEISAEIGAIESAYQRAGVEETQPRLSYPPYRS
Mflv_0530|M.gilvum_PYR-GCK AVTTLIDSNPDGAVASQSEISAEIGAIESAYQRAGVEETQPRLSYPPYRS
MSMEG_2601|M.smegmatis_MC2_155 -----------MALVSQSDISAEINEITESYHRGGLDEAQPRLDYPPYRS
MAV_3506|M.avium_104 --------MDPECVASQGDITAEIARIAAQYRADDGGAGQPLLDYPPYRA
.:.**.:*:*** * *: . ** *.*****:
Mvan_0560|M.vanbaalenii_PYR-1 SLLRHPTKDLHHADPEGVELWTPCFSERDVHPLEADLTVQHSGEPIGERL
Mflv_0530|M.gilvum_PYR-GCK SLLRHPTKDLHHADPEGVELWTPCFSERDVHPLEADLTVQHSGEPIGERL
MSMEG_2601|M.smegmatis_MC2_155 SVLRHPKAQLHQTDPESIELWAPCFGERDVAEHESDLTIQHTAEPIGERI
MAV_3506|M.avium_104 TILRHPKQPLVAVDPEAAELWAPCFGRDDVDPLDADLTAGHRGEPIGERV
::****. * .***. ***:***.. ** ::*** * .******:
Mvan_0560|M.vanbaalenii_PYR-1 VVTGRVVDGAGRPVRRQLVEIWQANAGGRYIHKRDQHPSPIDPNFTGAGR
Mflv_0530|M.gilvum_PYR-GCK VVTGRVVDGAGRPVRRQLVEIWQANAGGRYIHKGDQHPSPIDPNFTGAGR
MSMEG_2601|M.smegmatis_MC2_155 VVTGRVVDGDGRPVRHQLVEIWQANAAGRYRHLRDQHPAPLDPNFTGVGR
MAV_3506|M.avium_104 VVAGRVVDEAGRPVAGQLVEIWQANAAGRYRHQRDRHPAPLDPNFTGAGR
**:***** **** **********.*** * *:**:*:******.**
Mvan_0560|M.vanbaalenii_PYR-1 CLTDEDGIYRFTTIKPGPYPWKNHRNAWRPAHIHFSFFGTEFTQRMVTQM
Mflv_0530|M.gilvum_PYR-GCK CLTDEDGIYRFTTIKPGPYPWKNHRNAWRPAHIHFSLFGTEFTQRMVTQM
MSMEG_2601|M.smegmatis_MC2_155 CLTDADGTYRFTTIKPGPYPWRNHHNAWRPAHIHFSLFGTEFTQRMITQM
MAV_3506|M.avium_104 CLTGPDGWYRFLTIKPGPYPWRNHHNAWRPAYIHFSVFGTAFTQRLITQM
***. ** *** *********:**:******:****.*** ****::***
Mvan_0560|M.vanbaalenii_PYR-1 YFPGDPLLCLDPIFQAIPDQKARSRLVASYDHELSTHEWATGYRWDVVLT
Mflv_0530|M.gilvum_PYR-GCK YFPGDPLLCLDPIFQAIPDQKARSRLVASYDHELSTHEWATGYRWDVVLT
MSMEG_2601|M.smegmatis_MC2_155 YFPGDPLFAFDPIYQSITDAKARERLVATYDHDVTTHEWATGYRWDIVLT
MAV_3506|M.avium_104 YFPGDPMFELDPIFQSILDPAARRRLIAHYDHDLTQPEYATGYRWDIVLA
******:: :***:*:* * ** **:* ***::: *:*******:**:
Mvan_0560|M.vanbaalenii_PYR-1 GSARTPIENLGRGAHR
Mflv_0530|M.gilvum_PYR-GCK GSARTPIENLGRGAHR
MSMEG_2601|M.smegmatis_MC2_155 GSLRTPTEA-------
MAV_3506|M.avium_104 GGGRTPTGAGND----
*. ***