For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
VAGDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCNIWREAAENVAES LTRGARVIVSGRLKQRSFETREGEKRTVIEVEVDEIGPSLRYATAKVNKASRSGGFGSGSRPAPAQTSSA SGDDPWGSAPASGSFGGGDDEPPF
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | Mb0055 | ssb | - | 100% (164) | single-stranded DNA-binding protein |
| M. bovis AF2122 / 97 | Mb2505c | - | 3e-13 | 31.76% (148) | hypothetical protein Mb2505c |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. gilvum PYR-GCK | Mflv_0875 | - | 1e-78 | 83.72% (172) | single-strand DNA-binding protein |
| M. tuberculosis H37Rv | Rv0054 | ssb | 3e-92 | 100.00% (164) | single-stranded DNA-binding protein |
| M. leprae Br4923 | MLBr_02684 | ssb | 2e-83 | 89.88% (168) | single-stranded DNA-binding protein |
| M. abscessus ATCC 19977 | MAB_4898c | - | 2e-74 | 83.73% (166) | single-stranded DNA-binding protein |
| M. marinum M | MMAR_0073 | ssb | 1e-80 | 86.36% (176) | single-strand binding protein Ssb |
| M. avium 104 | MAV_1694 | ssb | 3e-17 | 32.17% (143) | hypothetical protein MAV_1694 |
| M. smegmatis MC2 155 | MSMEG_6896 | - | 1e-77 | 85.45% (165) | single-strand DNA-binding protein |
| M. thermoresistible (build 8) | TH_2093 | ssb | 4e-76 | 83.83% (167) | PROBABLE SINGLE-STRAND BINDING PROTEIN SSB |
| M. ulcerans Agy99 | MUL_0072 | ssb | 3e-81 | 88.37% (172) | single-stranded DNA-binding protein |
| M. vanbaalenii PYR-1 | Mvan_6033 | - | 1e-79 | 84.97% (173) | single-strand DNA-binding protein |
CLUSTAL 2.0.9 multiple sequence alignment
Mb0055|M.bovis_AF2122/97 MAGDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDG
Rv0054|M.tuberculosis_H37Rv MAGDTTITIVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDG
MLBr_02684|M.leprae_Br4923 MAGDTTITIVGNLTADPELRFTSSGAAVVNFTVASTPRIYDRQSGEWKDG
MMAR_0073|M.marinum_M MAGDTTITVVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQSGEWKDG
MUL_0072|M.ulcerans_Agy99 MAGDTTITVVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQSGEWKDG
MAB_4898c|M.abscessus_ATCC_199 MAGDTTITVVGNLTADPELRFTPSGAAVANFTVASTPRIFDRQSSEWKDG
MSMEG_6896|M.smegmatis_MC2_155 MAGDTTITVVGNLTADPELRFTPSGAAVANFTVASTPRMFDRQSGEWKDG
Mvan_6033|M.vanbaalenii_PYR-1 MAGDTTITVVGNLTADPELRFTPSGAAVANFTVASTPRIYDRQSGEWKDG
Mflv_0875|M.gilvum_PYR-GCK MAGDTIITVIGNLTADPELRFTPSGAAVANFTVASTPRMFDRQTNEWKDG
TH_2093|M.thermoresistible__bu VAGDTVITVVGNLTADPELRFTPSGAAVANFTVASTPRIFDRQTGEWRDG
MAV_1694|M.avium_104 -MFETPLTVVGHIVNNPERRQVG-AQEVIKFRVASNSRRRTADGG-WEPG
:* :*::*::. :** * . . * :* ***..* : . *. *
Mb0055|M.bovis_AF2122/97 EALFLRCNIWREAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTVIE
Rv0054|M.tuberculosis_H37Rv EALFLRCNIWREAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTVIE
MLBr_02684|M.leprae_Br4923 EALFLRCNIWREAAENVAESLTRGARVIVTGRLKQRSFETREGEKRTVVE
MMAR_0073|M.marinum_M EALFLRCNIWREAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTVVE
MUL_0072|M.ulcerans_Agy99 EALFLRCNIWREAAENVAESLTRGARVIVSGRLKQRSFETREGEKRTVVE
MAB_4898c|M.abscessus_ATCC_199 EALFLRCNIWREAAENVAESLTRGSRVIVTGRLKQRSFETREGEKRTVVE
MSMEG_6896|M.smegmatis_MC2_155 EALFLRCNIWREAAENVAESLTRGSRVIVTGRLKQRSFETREGEKRTVVE
Mvan_6033|M.vanbaalenii_PYR-1 EALFLRCNIWREAAENVAESLTRGSRVIVTGRLKQRSFETREGEKRTVVE
Mflv_0875|M.gilvum_PYR-GCK EALFLRCNIWREAAENVAESLVRGSRVIVSGRLKQRSFETREGEKRTVME
TH_2093|M.thermoresistible__bu EALFLRCNIWREAAENVAETLTRGTRVIVQGRLKQRSFETREGEKRTVVE
MAV_1694|M.avium_104 NSLFINVNCWGRLVTGVGAALGKGAPVIVVGHVYTSEYEDRDGNRRSSLE
::**:. * * . . .*. :* :*: *** *:: .:* *:*::*: :*
Mb0055|M.bovis_AF2122/97 VEVDEIGPSLRYATAKVNKASRSGG----FGSG--------SRPAPAQTS
Rv0054|M.tuberculosis_H37Rv VEVDEIGPSLRYATAKVNKASRSGG----FGSG--------SRPAPAQTS
MLBr_02684|M.leprae_Br4923 VEVDEIGPSLRYATAKVNKASRSGGGGGGFGSG--------SRQAPAQMS
MMAR_0073|M.marinum_M VEVEEIGPSLRYATAKVNKASRGGGGGG-FGGGGGGGGGGGARQAPAQAS
MUL_0072|M.ulcerans_Agy99 VEVEEIGPSLRYATAKVNKASRGGGGGG-FGGGGGGG----ARQAPAQAS
MAB_4898c|M.abscessus_ATCC_199 VEVDEIGPSLRYATAKVNKASRGGGGGGGFGGG-------GGGG----SR
MSMEG_6896|M.smegmatis_MC2_155 VEVDEIGPSLRYATAKVNKASRSGGGGGGFGSG-------GGG-----SR
Mvan_6033|M.vanbaalenii_PYR-1 VEVEEIGPSLRYATAKVNKASRSGGGGGGFGGG-------GGGGNSRPAA
Mflv_0875|M.gilvum_PYR-GCK LEVDEIGPSLRYATAKVNKASRSGGGGGGFGGG-------GGGNSRPAPS
TH_2093|M.thermoresistible__bu LEVDEIGPSLRYATAKVNKVSRGGGGGG-FGSG----------GSRAAGG
MAV_1694|M.avium_104 MRATSVGPDVSRAIVRIEKPGYTGPSTDEAAPA------------AAEAA
:.. .:**.: * .:::* . * . .
Mb0055|M.bovis_AF2122/97 S-ASGDDPWGSAPASGSFGGGDDEPPF
Rv0054|M.tuberculosis_H37Rv S-ASGDDPWGSAPASGSFGGGDDEPPF
MLBr_02684|M.leprae_Br4923 G-GVGDDPWGSAPTSGSFGVGDEEPPF
MMAR_0073|M.marinum_M SPAGGDDPWGSAPASGSFG-GDDEPPF
MUL_0072|M.ulcerans_Agy99 SPAGGDDPWGSAPASGSFG-GDDEPPF
MAB_4898c|M.abscessus_ATCC_199 SSEPADDPWGSAPASGS-TAADDEPPF
MSMEG_6896|M.smegmatis_MC2_155 QSEPKDDPWGSAPASGSFSGADDEPPF
Mvan_6033|M.vanbaalenii_PYR-1 NSAPAEDPWGSAPASGSFGGADDEPPF
Mflv_0875|M.gilvum_PYR-GCK NTGPAEDPWGSAPASGSFGGADDEPPF
TH_2093|M.thermoresistible__bu AAEPKDDPWGSAPASGSFGDADDEPPF
MAV_1694|M.avium_104 DAAGEDADRGDTVEPVDTGPVPLSA--
: *.: . . ..