For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
GLPSLDCHAHVSPSVTDRQIAQLGTAIVFAMTREPAEAVEAAQRRDHNILWGCGAHPSYVARGGAVDLDE FARCATGFAIVGEIGMDRRSGNLHHQAEVFDALLDRLKDEPVLLSVHSAGCTAEVAKIVRLRRTQGVIMH WFSGRPEEVDELLSLGCYFSVNTAMRREILTALPLDRLLPETDFPVARRRTGSKPGDTDQLEKLLAEIHD SDPMHVRRQFYRNLRRMSVGTGAIDRMPMHVADLLLAA*
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. ulcerans Agy99 | MUL_3214 | - | - | 100% (249) | TatD family deoxyribonuclease |
| M. ulcerans Agy99 | MUL_4653 | tatD | 3e-05 | 28.31% (166) | deoxyribonuclease TatD |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | - | - | - | - | - |
| M. gilvum PYR-GCK | Mflv_2878 | - | 8e-19 | 33.33% (225) | TatD-related deoxyribonuclease |
| M. tuberculosis H37Rv | - | - | - | - | - |
| M. leprae Br4923 | - | - | - | - | - |
| M. abscessus ATCC 19977 | - | - | - | - | - |
| M. marinum M | MMAR_4480 | tatD | 2e-05 | 25.19% (258) | deoxyribonuclease TatD |
| M. avium 104 | - | - | - | - | - |
| M. smegmatis MC2 155 | - | - | - | - | - |
| M. thermoresistible (build 8) | - | - | - | - | - |
| M. vanbaalenii PYR-1 | - | - | - | - | - |
CLUSTAL 2.0.9 multiple sequence alignment
Mflv_2878|M.gilvum_PYR-GCK -----------------MSAERLIDTHCHVSAY-----TDPVAMLREADE
MMAR_4480|M.marinum_M MRVSSNRAAEREAPPAPQPLAPLIDAHTHLDACGAADAAGVIAIVDRAAA
MUL_3214|M.ulcerans_Agy99 ------------------MGLPSLDCHAHVSPS---------VTDRQIAQ
:* * *:.. . .
Mflv_2878|M.gilvum_PYR-GCK AGVAVVAVTEDPEEYRRLRTRLGRRE-HVEVALGLHPLRAASFGPNELAR
MMAR_4480|M.marinum_M VGVEAVVTIADDLESARWVTRAAEWDPRVYAAVALHPTRTDALTEAARRE
MUL_3214|M.ulcerans_Agy99 LGTAIVFAMTR--EPAEAVEAAQRRDHNILWGCGAHPSYVARGGAVDLDE
*. * . * . . : .: . . ** . .
Mflv_2878|M.gilvum_PYR-GCK FFRLVP--QANWIGEVGLDYSRAG----ADTAKAQQRVFDVVLTEAQPGR
MMAR_4480|M.marinum_M IEELVAHRRVVAVGETGMDMYWPGRLEGCADPDVQREAFAWHIDLAKRTG
MUL_3214|M.ulcerans_Agy99 FARCAT--GFAIVGEIGMDR-RSG------NLHHQAEVFDALLDRLKDEP
: . .. :** *:* .* . * ..* : :
Mflv_2878|M.gilvum_PYR-GCK HPLTVHSRGAEKDVVRRLADAGLP--AILHWYTGPVNLAEEALQAGLYFS
MMAR_4480|M.marinum_M KPLMIHNRQADREVLDVLRAEGAPDTVIFHCFSSDAAMARECVAAGWLLS
MUL_3214|M.ulcerans_Agy99 VLLSVHSAGCTAEVAKIVRLRRTQG-VIMHWFSGRPEEVDELLSLGCYFS
* :*. . :* : .*:* ::. . * : * :*
Mflv_2878|M.gilvum_PYR-GCK VN--IAMVRSRKFPSLMRAIPRDRILLETDGPYAK---DRGRPAQPGRLN
MMAR_4480|M.marinum_M LSGTVSFRNARELREAVPLIPLDQLLVETDAPFLTPHPYRGAANEPYCLP
MUL_3214|M.ulcerans_Agy99 VN--TAMRR-----EILTALPLDRLLPETDFPVAR----RRTGSKPGDTD
:. :: . . : :* *::* *** * * :*
Mflv_2878|M.gilvum_PYR-GCK ELATALGTSWGTDRVETTNILRANQTRFLNRA-----------------
MMAR_4480|M.marinum_M YTVRALAELLNGSAEELAQVTASNARRVYGLG-----------------
MUL_3214|M.ulcerans_Agy99 QLEKLLAEIHDSDPMHVRRQFYRNLRRMSVGTGAIDRMPMHVADLLLAA
*. . . . . * *.