For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
VGQKINPHGFRLGITTDWKSRWYADKQYADYVKEDVAIRRLLSSGLERAGIADVEIERTRDRVRVDIHTA RPGIVIGRRGTEADRIRADLEKLTGKQVQLNILEVKNPESQAQLVAQGVAEQLSNRVAFRRAMRKAIQSA MRQPNVKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRADIDYGLYEAKTTFGRIGVKVWIYKGDIVGG KRELAAAVPAGADRPRRERPAGSRPRRSGASGTTATGTEAGRAVGSEEPAAAESATTPEAQSTES
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. ulcerans Agy99 | MUL_0796 | rpsC | - | 100% (275) | 30S ribosomal protein S3 |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | Mb0727 | rpsC | 1e-146 | 94.91% (275) | 30S ribosomal protein S3 |
| M. gilvum PYR-GCK | Mflv_5043 | rpsC | 1e-142 | 90.91% (275) | 30S ribosomal protein S3 |
| M. tuberculosis H37Rv | Rv0707 | rpsC | 1e-146 | 94.91% (275) | 30S ribosomal protein S3 |
| M. leprae Br4923 | MLBr_01857 | rpsC | 1e-139 | 88.26% (281) | 30S ribosomal protein S3 |
| M. abscessus ATCC 19977 | MAB_3814c | rpsC | 1e-138 | 89.96% (279) | 30S ribosomal protein S3 |
| M. marinum M | MMAR_1037 | rpsC | 1e-155 | 100.00% (275) | 30S ribosomal protein S3, RpsC |
| M. avium 104 | MAV_4465 | rpsC | 1e-144 | 91.43% (280) | 30S ribosomal protein S3 |
| M. smegmatis MC2 155 | MSMEG_1442 | rpsC | 1e-139 | 90.58% (276) | 30S ribosomal protein S3 |
| M. thermoresistible (build 8) | TH_0401 | rpsC | 1e-131 | 88.56% (271) | PROBABLE 30S RIBOSOMAL PROTEIN S3 RPSC |
| M. vanbaalenii PYR-1 | Mvan_1311 | rpsC | 1e-137 | 88.49% (278) | 30S ribosomal protein S3 |
CLUSTAL 2.0.9 multiple sequence alignment
MUL_0796|M.ulcerans_Agy99 MGQKINPHGFRLGITTDWKSRWYADKQYADYVKEDVAIRRLLSSGLERAG
MMAR_1037|M.marinum_M MGQKINPHGFRLGITTDWKSRWYADKQYADYVKEDVAIRRLLSSGLERAG
Mb0727|M.bovis_AF2122/97 MGQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRRLLSSGLERAG
Rv0707|M.tuberculosis_H37Rv MGQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRRLLSSGLERAG
MLBr_01857|M.leprae_Br4923 MGQKINPHGFRLGITTGWKSRWYADKQYAEYVKEDVAIRRLLSTGLERAG
MAV_4465|M.avium_104 MGQKINPHGFRLGITTDWKSRWYADKQYADYVKEDVAIRRLLSTGLERAG
Mflv_5043|M.gilvum_PYR-GCK MGQKINPHGFRLGITTDWKSRWYADKQYADYIKEDVAIRKLLATGLERAG
Mvan_1311|M.vanbaalenii_PYR-1 MGQKINPHGFRLGITTEWKSRWYADKQYADYIKEDVAIRKLLATGLERAG
MAB_3814c|M.abscessus_ATCC_199 MGQKINPHGFRLGITTDWKSRWYADKQYADYVKEDVAIRRLLATGLERAG
MSMEG_1442|M.smegmatis_MC2_155 MGQKINPHGFRLGITTEWKSRWYADKQYKDYVKEDVAIRKLLATGLERAG
TH_0401|M.thermoresistible__bu VGQKINPHGFRLGITTDWKSRWYADKQYKDYVKEDVAIRRLLSTGLERAG
:*************** *********** :*:*******:**::******
MUL_0796|M.ulcerans_Agy99 IADVEIERTRDRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQL
MMAR_1037|M.marinum_M IADVEIERTRDRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQL
Mb0727|M.bovis_AF2122/97 IADVEIERTRDRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQL
Rv0707|M.tuberculosis_H37Rv IADVEIERTRDRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQL
MLBr_01857|M.leprae_Br4923 IADVEIERTRDRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTCKQVQL
MAV_4465|M.avium_104 IADVEIERTRDRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQL
Mflv_5043|M.gilvum_PYR-GCK IADVEIERTRDRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTKKQVQL
Mvan_1311|M.vanbaalenii_PYR-1 IADVEIERTRDRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTKKQVQL
MAB_3814c|M.abscessus_ATCC_199 IAKVEIERTRDRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQL
MSMEG_1442|M.smegmatis_MC2_155 IADVEIERTRDRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQL
TH_0401|M.thermoresistible__bu IANVEIERTRDRVRVDIHTARPGIVIGRRGTEADRIRGDLEKLTGKQVQL
**.**********************************.****** *****
MUL_0796|M.ulcerans_Agy99 NILEVKNPESQAQLVAQGVAEQLSNRVAFRRAMRKAIQSAMRQPNVKGIR
MMAR_1037|M.marinum_M NILEVKNPESQAQLVAQGVAEQLSNRVAFRRAMRKAIQSAMRQPNVKGIR
Mb0727|M.bovis_AF2122/97 NILEVKNPESQAQLVAQGVAEQLSNRVAFRRAMRKAIQSAMRQPNVKGIR
Rv0707|M.tuberculosis_H37Rv NILEVKNPESQAQLVAQGVAEQLSNRVAFRRAMRKAIQSAMRQPNVKGIR
MLBr_01857|M.leprae_Br4923 NILEVKNPESQAQLVAQGVAEQLSNRVAFRRAMRKAIQSAMRQPNVKGIR
MAV_4465|M.avium_104 NILEVRNPESQAQLVAQGVAEQLSNRVAFRRAMRKAIQSAMRQPNVKGIR
Mflv_5043|M.gilvum_PYR-GCK NILEVKNPESRAQLVAQGVAEQLSNRVAFRRAMRKAIQSAMRQPNVKGIR
Mvan_1311|M.vanbaalenii_PYR-1 NILEVKNPESVAQLVAQGVAEQLSNRVAFRRAMRKAIQSAMRQPNVKGIR
MAB_3814c|M.abscessus_ATCC_199 NILEVKNPEAEAQLVAQGVAEQLSNRVAFRRAMRKAIQSAMRQPNVKGIR
MSMEG_1442|M.smegmatis_MC2_155 NILEVKNPESQAQLVAQGVAEQLSNRVAFRRAMRKAIQSAMRQPNVKGIR
TH_0401|M.thermoresistible__bu NILEVKNPESNAQLVAQGVAEQLSNRVAFRRAMRKAIQSAMRQPNVKGIR
*****:***: ***************************************
MUL_0796|M.ulcerans_Agy99 VQCSGRLGGAEMSRSEFYREGRVPLHTLRADIDYGLYEAKTTFGRIGVKV
MMAR_1037|M.marinum_M VQCSGRLGGAEMSRSEFYREGRVPLHTLRADIDYGLYEAKTTFGRIGVKV
Mb0727|M.bovis_AF2122/97 VQCSGRLGGAEMSRSEFYREGRVPLHTLRADIDYGLYEAKTTFGRIGVKV
Rv0707|M.tuberculosis_H37Rv VQCSGRLGGAEMSRSEFYREGRVPLHTLRADIDYGLYEAKTTFGRIGVKV
MLBr_01857|M.leprae_Br4923 VQCSGRLGGAEMSRSEFYREGRVPLHTLRADIDYGLHEAKTTFGRIGVKV
MAV_4465|M.avium_104 VQCSGRLGGAEMSRSEFYREGRVPLHTLRADIDYGLYEAKTTFGRIGVKV
Mflv_5043|M.gilvum_PYR-GCK VQCSGRLGGAEMSRSEFYREGRVPLHTLRADIDYGLYEAKTTFGRIGVKV
Mvan_1311|M.vanbaalenii_PYR-1 VQCSGRLGGAEMSRSEFYREGRVPLHTLRADIDYGLYEAKTTFGRIGVKV
MAB_3814c|M.abscessus_ATCC_199 VQCSGRLGGAEMSRSEFYREGRVPLHTLRADIDYGLYEAKTTFGRIGVKV
MSMEG_1442|M.smegmatis_MC2_155 VQCSGRLGGAEMSRSEFYREGRVPLHTLRADIDYGLYEAKTTFGRIGVKV
TH_0401|M.thermoresistible__bu VQCSGRLGGAEMSRSEFYREGRVPLHTLRADIDYGLYEARTTFGRIGVKV
************************************:**:**********
MUL_0796|M.ulcerans_Agy99 WIYKGDIVGGKRELAAAVPAG----ADRPRRERPAGSRPRRSGASGTTAT
MMAR_1037|M.marinum_M WIYKGDIVGGKRELAAAVPAG----ADRPRRERPAGSRPRRSGASGTTAT
Mb0727|M.bovis_AF2122/97 WIYKGDIVGGKRELAAAAPAG----ADRPRRERPSGTRPRRSGASGTTAT
Rv0707|M.tuberculosis_H37Rv WIYKGDIVGGKRELAAAAPAG----ADRPRRERPSGTRPRRSGASGTTAT
MLBr_01857|M.leprae_Br4923 WIYKGDIVGGKREVTAVAPAG----AERARRERPSGTRPRRSGAAGTTVT
MAV_4465|M.avium_104 WIYKGDVVGGKRELAAAAPAG----AERPRRERPSGTRPRRSGASGTTAT
Mflv_5043|M.gilvum_PYR-GCK WIYKGDIVGGKRELAAAAPAG----ADRPRRERPSGTRPRRSGASGTTAT
Mvan_1311|M.vanbaalenii_PYR-1 WIYKGDIVGGKRELTAAAPA-----ADRPRRDRPSGTRPRRSGASGTTAT
MAB_3814c|M.abscessus_ATCC_199 WIYKGDIVGGKRELAAAGVEAGRGAPDRPRRERPAGTRPRRSGSSGTTAT
MSMEG_1442|M.smegmatis_MC2_155 WIYKGDIVGGKRELAAAAPAS-----DRPRRERPSGTRPRRSGSAGTTAT
TH_0401|M.thermoresistible__bu WIYKGDVVGGKRELGVAPPSE------RPRRERPS--RPRRSGASGTTAT
******:******: .. *.**:**: ******::***.*
MUL_0796|M.ulcerans_Agy99 GTEAGRAVGS----EEPAAA-------ESATTPEAQSTES---
MMAR_1037|M.marinum_M GTEAGRAVGS----EEPAAA-------ESATTPEAQSTES---
Mb0727|M.bovis_AF2122/97 GTDAGRAAG-----GEEAAP-------DAAAPVEAQSTES---
Rv0707|M.tuberculosis_H37Rv GTDAGRAAG-----GEEAAP-------DAAAPVEAQSTES---
MLBr_01857|M.leprae_Br4923 GTDAGRAVG-----GQESAATNIGHSDDSVVTHEPQIAES---
MAV_4465|M.avium_104 GTEAGRAAAS----ADESTAAG--QPAEAAPAAEPQSTES---
Mflv_5043|M.gilvum_PYR-GCK STDAGRAATE---EAPATDAAA-----TAPAAGQPETTES---
Mvan_1311|M.vanbaalenii_PYR-1 STDAGRAASEGTVEAPATEAAA-----TAPSAGQPETTES---
MAB_3814c|M.abscessus_ATCC_199 STEAGRAAAE----TPASDG--------ASAPS-AETTES---
MSMEG_1442|M.smegmatis_MC2_155 STEAGRAATS----DAPAAGTA-----AAAEAP-AESTES---
TH_0401|M.thermoresistible__bu GTTPPPGTEQAPATAEASAGTEAAAG-AAAAAPSTETSTSGES
.* . .. : : . .: : *