For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
LVISSEDRVTLESWTRSSTVPAGRVERARIVLAVADGAGTSGAARQVGVSRPTVIKWRDRFAAFGIEGLD DEPRSGRPKTVDDAEILATTLEPPPESLAVTHWSSRLLGKHLGIGDATVARAWRRYGVKPWRRETFKFST DPELEAKVRDVIGLYLNPTEKAVVLCVDEKSQIQALNRTQPILPLRPGLPERATHDYQRNGTATLFAALE IATGKVTDRCYERHGKAEFLDFLKTVARAYPRRKLHVVCDNYHTHKHADINAWLVKNPRVTLHFTPTSGS WLNLVEVFFSIITRQEIRRGSFNSVKELIAAISAFIEGWNQRAHPFVWTKTADEILPHTRKQTSDARH
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. smegmatis MC2 155 | MSMEG_4072 | - | - | 100% (348) | ISMsm5, transposase |
| M. smegmatis MC2 155 | MSMEG_6589 | - | 0.0 | 99.43% (348) | ISMsm5, transposase |
| M. smegmatis MC2 155 | MSMEG_0547 | - | 0.0 | 99.43% (348) | ISMsm5, transposase |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | - | - | - | - | - |
| M. gilvum PYR-GCK | - | - | - | - | - |
| M. tuberculosis H37Rv | - | - | - | - | - |
| M. leprae Br4923 | - | - | - | - | - |
| M. abscessus ATCC 19977 | - | - | - | - | - |
| M. marinum M | MMAR_1425 | - | 7e-07 | 34.43% (61) | transposase for insertion sequence |
| M. avium 104 | - | - | - | - | - |
| M. thermoresistible (build 8) | - | - | - | - | - |
| M. ulcerans Agy99 | - | - | - | - | - |
| M. vanbaalenii PYR-1 | Mvan_0458 | - | 3e-05 | 40.62% (64) | integrase catalytic subunit |
CLUSTAL 2.0.9 multiple sequence alignment
MSMEG_4072|M.smegmatis_MC2_155 MVISSEDRVTLESWTRSSTVPAGRVERARIVLAVADGAGTSGAARQVGVS
MMAR_1425|M.marinum_M --------------------------------------------------
Mvan_0458|M.vanbaalenii_PYR-1 -MVNPEVPESDSDVAARVTVEIR----LRAVTEVNDGAPVGEVAERYGVT
MSMEG_4072|M.smegmatis_MC2_155 RPTVIKWRDRFAAFGIEGLDDE---PRSGRPKTVDDAEILATTLEPPPES
MMAR_1425|M.marinum_M --------------------------------------------------
Mvan_0458|M.vanbaalenii_PYR-1 RQTVTAWRKRYEAGGLEALADQSRRPHSSPGRISPDVEALICEMRRHHRR
MSMEG_4072|M.smegmatis_MC2_155 LAVT--HWSSRLLGKHLGIGDATVARAWRRYGVKP-----WRRETFKFST
MMAR_1425|M.marinum_M --------------------------------------------------
Mvan_0458|M.vanbaalenii_PYR-1 WGARRIAYELKLEIGKQAPSRSTTHRVLVRNGLVNSQEQQHKRVYKRWAR
MSMEG_4072|M.smegmatis_MC2_155 DPELEAKVRDVIG--LYLNPTEKAVVLCVDEKSQIQALNRTQPILPLRPG
MMAR_1425|M.marinum_M --------------------------------------------------
Mvan_0458|M.vanbaalenii_PYR-1 EAPMHLWQLDIVGGVFLVNGREHKMLTAIDDHSRFVVAAAVLPVP-----
MSMEG_4072|M.smegmatis_MC2_155 LPERATHDYQRNGTATLFAALEIATGKVTDRCYERHGKAEFLDFLKTVAR
MMAR_1425|M.marinum_M --------------------------------------------------
Mvan_0458|M.vanbaalenii_PYR-1 -SGPAVCDAFLAAIARWGAPFEVLTD---------NGKQFTGKFTRPLP-
MSMEG_4072|M.smegmatis_MC2_155 AYPRRKLHVVCDNYHTHKHADINAWLVKNPRVTLHFTPTSGSWLNLVEVF
MMAR_1425|M.marinum_M ------MHLILNHDATHKHSAVRVWLDGRPRLHLDAVAASSSWLDLVDRW
Mvan_0458|M.vanbaalenii_PYR-1 --AEVLFERICRDNGITARLTKRRSPTTTGKVERFHKTLRRELLDETGAF
:. : . : . :: . . *: . :
MSMEG_4072|M.smegmatis_MC2_155 FSIITRQEIRRGSFNSVKELIAAISAFIEGWNQRAHPFVWTKTADEILPH
MMAR_1425|M.marinum_M LRELTEKALRRVAFHSMP--------------------------------
Mvan_0458|M.vanbaalenii_PYR-1 ESIEAAQAAIDEWVHAYNTVRPHQSLDMATPASLFRSRVTDPELHPPDLG
: : .::
MSMEG_4072|M.smegmatis_MC2_155 TRKQTSDARH-
MMAR_1425|M.marinum_M -----------
Mvan_0458|M.vanbaalenii_PYR-1 HRRQIFGVLIR