For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
RVRGRATIRRSALATGSVITVAGLLLAGCGSKASETDAANAESCVDTSGPTIKVGSLNSLSGTMAISEVT VRDAIKLAVEEINADGGVLGKQIELIGEDGASEPTVFAEKAEKLISSDCVAAVFGGWTSSSRKAMLPVFE SANALLYYPVQYEGLESSPNIFYTGATTNQQIVPALDYLKEKGVKSLYLVGSDYVFPQTANRIIKAYAEA NGIEIKGEDYTPLGSTDFSTIVNKVRSANADAVFNTLNGDSNVAFFREYRNVGLTPDTMPVVSVSIAEEE VGGIGVQNIDGQLTAWNYYETIDTPENKAFVKAYKDFVKDPKKPTSDPMEAAYVSVYLWKNTVEKAQSFD VKAIQDNADGVSFDAPEGKVTIDGENHHITKTARIGEIRPDGLIYTVWESKGPIEPDPYLKSYPWAAGLS S*
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. smegmatis MC2 155 | MSMEG_2982 | - | - | 100% (422) | putative periplasmic binding protein |
| M. smegmatis MC2 155 | MSMEG_5339 | - | 2e-27 | 27.44% (317) | nitrile hydratase regulator1 |
| M. smegmatis MC2 155 | MSMEG_6880 | - | 2e-14 | 25.67% (374) | hydrophobic amino acid ABC transporter, putative |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | - | - | - | - | - |
| M. gilvum PYR-GCK | Mflv_3798 | - | 0.0 | 90.82% (403) | extracellular ligand-binding receptor |
| M. tuberculosis H37Rv | - | - | - | - | - |
| M. leprae Br4923 | - | - | - | - | - |
| M. abscessus ATCC 19977 | - | - | - | - | - |
| M. marinum M | - | - | - | - | - |
| M. avium 104 | - | - | - | - | - |
| M. thermoresistible (build 8) | TH_2887 | - | 0.0 | 86.73% (422) | PUTATIVE Extracellular ligand-binding receptor |
| M. ulcerans Agy99 | - | - | - | - | - |
| M. vanbaalenii PYR-1 | Mvan_2596 | - | 0.0 | 90.80% (402) | extracellular ligand-binding receptor |
CLUSTAL 2.0.9 multiple sequence alignment
Mflv_3798|M.gilvum_PYR-GCK -------------------MAVASLLLAGCGSKASETDSANAESCVDTSG
Mvan_2596|M.vanbaalenii_PYR-1 -------------------MAAASLLLAGCGSKASETDSANAESCVDTSG
MSMEG_2982|M.smegmatis_MC2_155 MRVRGRATIRRSALATGSVITVAGLLLAGCGSKASETDAANAESCVDTSG
TH_2887|M.thermoresistible__bu MRGPRRSRFNTSALRAGAVVFAAGLVLAGCGSRAGDAPSSGAASCVDTSG
: .*.*:******:*.:: ::.* *******
Mflv_3798|M.gilvum_PYR-GCK SSIKVGALNSLSGTMAISEVTVRNAIDLAVEQINASGGVLGKQIQLVSED
Mvan_2596|M.vanbaalenii_PYR-1 STIKVGALNSLSGTMAISEVTVRNAIDLAVEQINASGGVMGKQIQLVGED
MSMEG_2982|M.smegmatis_MC2_155 PTIKVGSLNSLSGTMAISEVTVRDAIKLAVEEINADGGVLGKQIELIGED
TH_2887|M.thermoresistible__bu PTIKVGSLNSLSGTMAISEVTVRDAIKLAVDEINADGGVLGKQIELIGED
.:****:****************:**.***::***.***:****:*:.**
Mflv_3798|M.gilvum_PYR-GCK GASEPTVFAEKAEKLISSDCVAAVFGGWTSSSRKAMLPVFESANSLLYYP
Mvan_2596|M.vanbaalenii_PYR-1 GASEPTVFAEKAEKLISSDCVAAVFGGWTSSSRKAMLPVFESANSLLYYP
MSMEG_2982|M.smegmatis_MC2_155 GASEPTVFAEKAEKLISSDCVAAVFGGWTSSSRKAMLPVFESANALLYYP
TH_2887|M.thermoresistible__bu GASEPTVFAEKAEKLISSDCVAAVFGGWTSSSRKAMLPVFESNNALLYYP
****************************************** *:*****
Mflv_3798|M.gilvum_PYR-GCK VQYEGLESSPNIFYTGATTNQQIVPALDYLKEKGVTSLYLVGSDYVFPQT
Mvan_2596|M.vanbaalenii_PYR-1 VQYEGLESSPNIFYTGATTNQQIVPALDYLKEKGIKSLYLVGSDYVFPQT
MSMEG_2982|M.smegmatis_MC2_155 VQYEGLESSPNIFYTGATTNQQIVPALDYLKEKGVKSLYLVGSDYVFPQT
TH_2887|M.thermoresistible__bu VQYEGLESSPNIFYTGATTNQQIVPALDYLKEQGVTSLYLVGSDYVFPQT
********************************:*:.**************
Mflv_3798|M.gilvum_PYR-GCK ANRIIKAYAEANGIEIKGEDYTPLGSTDFSTIINKVRSADADAVFNTLNG
Mvan_2596|M.vanbaalenii_PYR-1 ANRIIKAYAAANGIEIKGEDYTPLGSTDFSTIVNKVRTADADAVFNTLNG
MSMEG_2982|M.smegmatis_MC2_155 ANRIIKAYAEANGIEIKGEDYTPLGSTDFSTIVNKVRSANADAVFNTLNG
TH_2887|M.thermoresistible__bu ANRIIKAYAPANGIEIKGEDYTPLGSTDFSTIVNKIRTADADAVFNTLNG
********* **********************:**:*:*:**********
Mflv_3798|M.gilvum_PYR-GCK DSNVAFFREYKNVGLTPQDMPVVSVSIAEEEVGGIGVQNIDGQLTAWDYY
Mvan_2596|M.vanbaalenii_PYR-1 DSNVAFFREYRNVGLTPQDMPVVSVSIAEEEVGGIGVQNITGQLTAWNYY
MSMEG_2982|M.smegmatis_MC2_155 DSNVAFFREYRNVGLTPDTMPVVSVSIAEEEVGGIGVQNIDGQLTAWNYY
TH_2887|M.thermoresistible__bu DSNVAFFREYRNVGLTAQEMPVVSVSIAEEEIGGIGVQNIEGQLTAWNYY
**********:*****.: ************:******** ******:**
Mflv_3798|M.gilvum_PYR-GCK QTIDTPVNNEFVKAYKDKFG-ADKPTSDPMEAAYVSVYLWKNTVEKAQSF
Mvan_2596|M.vanbaalenii_PYR-1 QTIDTPVNNEFVKAYKDKYG-ADKPTSDPMEAAYVSVYLWKNTVEKAQSF
MSMEG_2982|M.smegmatis_MC2_155 ETIDTPENKAFVKAYKDFVKDPKKPTSDPMEAAYVSVYLWKNTVEKAQSF
TH_2887|M.thermoresistible__bu QTVDNPVNKAFVPAYKDEFG-AAKPTSDPMEAAYVSVYLWKNTVEKANSF
:*:*.* *: ** **** . ************************:**
Mflv_3798|M.gilvum_PYR-GCK DVKAIQDNADGVTFDAPEGLVTIDGDNHHITKTARIGEIRPDGLIYTVWE
Mvan_2596|M.vanbaalenii_PYR-1 DVKAIQDNAGGVTFDAPEGLVTIDGENHHITKTARIGEIRPDGLIYTVWE
MSMEG_2982|M.smegmatis_MC2_155 DVKAIQDNADGVSFDAPEGKVTIDGENHHITKTARIGEIRPDGLIYTVWE
TH_2887|M.thermoresistible__bu DVDAIQENADGVSFDAPEGTVTIDGETHHITKTARIGEIRPDGLIYTVWE
**.***:**.**:****** *****:.***********************
Mflv_3798|M.gilvum_PYR-GCK SPAPIEPDPFLKSYPWAAGLSG
Mvan_2596|M.vanbaalenii_PYR-1 SPGPIEPDPYLKSYEWAAGLSG
MSMEG_2982|M.smegmatis_MC2_155 SKGPIEPDPYLKSYPWAAGLSS
TH_2887|M.thermoresistible__bu SPAPIEPDPYLKSYPWAAGLAS
* .******:**** *****:.